python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_0.n_5510.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_0.n_5510.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_10.n_241.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_10.n_241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_11.n_190.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_11.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_12.n_156.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_12.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_13.n_152.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_13.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_14.n_110.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_14.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_15.n_83.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_15.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_16.n_47.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_16.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_17.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_18.n_23.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_18.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_19.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_1.n_4580.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_1.n_4580.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_2.n_4045.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_2.n_4045.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_3.n_2471.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_3.n_2471.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_4.n_2363.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_4.n_2363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_5.n_2295.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_5.n_2295.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_6.n_1541.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_6.n_1541.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_7.n_1531.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_7.n_1531.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_8.n_1067.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_8.n_1067.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_9.n_575.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_9.n_575.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_0.n_1539.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_0.n_1539.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_10.n_95.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_10.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_11.n_77.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_11.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_12.n_67.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_12.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_13.n_65.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_13.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_14.n_56.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_14.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_15.n_43.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_15.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_16.n_39.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_16.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_17.n_34.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_17.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_1.n_351.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_1.n_351.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_2.n_297.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_2.n_297.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_3.n_207.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_3.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_4.n_152.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_4.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_5.n_145.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_5.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_6.n_139.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_6.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_7.n_137.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_7.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_8.n_135.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_8.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_9.n_104.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_9.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_0.n_1423.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_0.n_1423.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_10.n_376.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_10.n_376.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_11.n_319.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_11.n_319.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_12.n_305.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_12.n_305.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_13.n_112.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_13.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_14.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_15.n_34.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_15.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_16.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_1.n_1306.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_1.n_1306.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_2.n_1163.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_2.n_1163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_3.n_781.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_3.n_781.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_4.n_724.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_4.n_724.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_5.n_607.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_5.n_607.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_6.n_482.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_6.n_482.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_7.n_476.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_7.n_476.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_8.n_402.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_8.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_9.n_384.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_9.n_384.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_0.n_984.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_0.n_984.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_10.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_11.n_52.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_11.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_12.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_13.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_1.n_576.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_1.n_576.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_2.n_333.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_2.n_333.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_3.n_329.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_3.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_4.n_328.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_4.n_328.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_5.n_283.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_5.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_7.n_172.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_7.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_8.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_9.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_10.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_11.n_52.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_11.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_12.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_13.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_1.n_576.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_1.n_576.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_2.n_333.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_2.n_333.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_3.n_329.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_3.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_4.n_328.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_4.n_328.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_5.n_283.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_5.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_7.n_172.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_7.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_8.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_9.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_0.n_2004.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_0.n_2004.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_10.n_272.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_10.n_272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_11.n_261.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_11.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_12.n_216.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_12.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_13.n_184.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_13.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_14.n_136.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_14.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_15.n_129.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_15.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_16.n_126.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_16.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_17.n_125.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_17.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_18.n_124.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_18.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_19.n_94.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_19.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_1.n_1835.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_1.n_1835.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_20.n_94.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_20.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_21.n_84.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_21.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_2.n_1185.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_2.n_1185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_3.n_751.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_3.n_751.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_4.n_653.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_4.n_653.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_5.n_386.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_5.n_386.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_6.n_358.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_6.n_358.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_7.n_323.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_7.n_323.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_8.n_312.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_8.n_312.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_9.n_293.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_9.n_293.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_11.n_71.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_11.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_12.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_13.n_43.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_13.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_14.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_15.n_38.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_15.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_16.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_17.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_1.n_813.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_1.n_813.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_2.n_395.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_2.n_395.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_3.n_295.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_3.n_295.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_4.n_271.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_4.n_271.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_5.n_222.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_5.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_6.n_170.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_6.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_7.n_131.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_7.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_8.n_122.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_8.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_9.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_0.n_322.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_0.n_322.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_10.n_63.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_10.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_11.n_60.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_11.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_12.n_58.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_12.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_13.n_56.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_13.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_14.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_16.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_17.n_43.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_17.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_19.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_1.n_274.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_1.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_20.n_25.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_20.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_21.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_2.n_138.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_2.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_3.n_98.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_3.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_4.n_95.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_4.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_5.n_94.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_5.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_6.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_7.n_86.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_7.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_8.n_76.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_8.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_9.n_63.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_9.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_0.n_1422.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_0.n_1422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_1.n_409.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_1.n_409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_2.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_3.n_98.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_3.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_4.n_84.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_4.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_5.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_0.n_1107.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_0.n_1107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_10.n_46.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_10.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_11.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_1.n_569.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_1.n_569.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_2.n_224.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_2.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_3.n_184.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_3.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_4.n_178.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_4.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_5.n_156.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_5.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_6.n_107.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_6.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_7.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_8.n_64.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_8.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_9.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_0.n_1098.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_0.n_1098.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_10.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_11.n_52.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_11.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_12.n_30.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_12.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_13.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_1.n_737.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_1.n_737.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_2.n_446.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_2.n_446.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_3.n_285.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_3.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_4.n_97.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_4.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_5.n_95.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_5.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_6.n_88.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_6.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_7.n_88.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_7.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_8.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_9.n_61.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_9.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_0.n_491.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_0.n_491.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_1.n_349.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_1.n_349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_2.n_243.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_2.n_243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_3.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_0.n_1582.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_0.n_1582.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_10.n_78.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_10.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_1.n_1366.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_1.n_1366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_2.n_1178.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_2.n_1178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_3.n_658.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_3.n_658.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_4.n_423.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_4.n_423.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_5.n_393.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_5.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_6.n_325.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_6.n_325.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_7.n_193.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_7.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_8.n_177.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_8.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_9.n_168.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_9.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_0.n_4043.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_0.n_4043.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_10.n_363.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_10.n_363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_11.n_296.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_11.n_296.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_12.n_252.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_12.n_252.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_13.n_250.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_13.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_14.n_228.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_14.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_15.n_157.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_15.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_16.n_127.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_16.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_17.n_120.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_17.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_18.n_113.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_18.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_19.n_105.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_19.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_1.n_2491.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_1.n_2491.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_20.n_87.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_20.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_21.n_40.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_21.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_22.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_23.n_20.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_23.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_2.n_652.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_2.n_652.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_3.n_555.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_3.n_555.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_4.n_532.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_4.n_532.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_5.n_468.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_5.n_468.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_6.n_457.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_6.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_7.n_440.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_7.n_440.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_8.n_428.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_8.n_428.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_9.n_375.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_9.n_375.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK480-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK480-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK480-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK480-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_0.n_1807.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_0.n_1807.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_10.n_51.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_10.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_11.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_12.n_30.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_12.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_1.n_1370.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_1.n_1370.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_2.n_1076.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_2.n_1076.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_3.n_442.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_3.n_442.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_4.n_326.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_4.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_5.n_211.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_5.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_6.n_204.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_6.n_204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_7.n_157.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_7.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_8.n_126.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_8.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_9.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_0.n_1310.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_0.n_1310.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_10.n_163.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_10.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_11.n_84.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_11.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_12.n_81.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_12.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_13.n_72.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_13.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_14.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_15.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_16.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_17.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_1.n_512.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_1.n_512.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_2.n_231.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_2.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_3.n_210.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_3.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_4.n_207.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_4.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_5.n_201.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_5.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_6.n_195.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_6.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_7.n_188.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_7.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_8.n_184.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_8.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_9.n_183.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_9.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_0.n_10966.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_0.n_10966.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_10.n_482.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_10.n_482.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_11.n_409.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_11.n_409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_12.n_396.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_12.n_396.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_13.n_287.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_13.n_287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_14.n_273.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_14.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_15.n_264.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_15.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_16.n_264.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_16.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_17.n_236.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_17.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_18.n_229.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_18.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_19.n_130.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_19.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_1.n_3205.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_1.n_3205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_20.n_109.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_20.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_21.n_70.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_21.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_22.n_40.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_22.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_23.n_34.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_23.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_24.n_28.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_24.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_25.n_27.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_25.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_26.n_22.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_26.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_27.n_22.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_27.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_2.n_3028.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_2.n_3028.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_3.n_3007.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_3.n_3007.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_4.n_2743.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_4.n_2743.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_5.n_2705.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_5.n_2705.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_6.n_2266.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_6.n_2266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_7.n_724.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_7.n_724.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_8.n_566.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_8.n_566.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_9.n_538.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_9.n_538.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_0.n_3935.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_0.n_3935.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_10.n_80.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_10.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_11.n_65.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_11.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_12.n_63.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_12.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_13.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_1.n_1206.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_1.n_1206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_2.n_1045.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_2.n_1045.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_3.n_754.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_3.n_754.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_4.n_693.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_4.n_693.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_5.n_653.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_5.n_653.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_6.n_528.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_6.n_528.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_7.n_471.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_7.n_471.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_8.n_137.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_8.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_9.n_104.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_9.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_0.n_5288.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_0.n_5288.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_10.n_378.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_10.n_378.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_11.n_318.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_11.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_12.n_300.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_12.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_13.n_283.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_13.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_14.n_211.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_14.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_15.n_159.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_15.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_16.n_117.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_16.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_17.n_86.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_17.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_18.n_60.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_18.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_19.n_46.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_19.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_1.n_1811.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_1.n_1811.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_20.n_23.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_20.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_2.n_1806.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_2.n_1806.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_3.n_1302.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_3.n_1302.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_4.n_1176.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_4.n_1176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_5.n_1085.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_5.n_1085.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_6.n_764.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_6.n_764.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_7.n_597.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_7.n_597.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_8.n_414.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_8.n_414.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_9.n_413.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_9.n_413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_0.n_14853.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_0.n_14853.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_10.n_268.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_10.n_268.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_11.n_222.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_11.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_12.n_130.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_12.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_13.n_103.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_13.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_14.n_80.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_14.n_80.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_16.n_70.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_16.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_17.n_58.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_17.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_18.n_43.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_18.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_19.n_40.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_19.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_1.n_3341.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_1.n_3341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_20.n_27.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_20.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_2.n_1675.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_2.n_1675.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_3.n_1056.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_3.n_1056.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_4.n_1042.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_4.n_1042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_5.n_985.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_5.n_985.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_6.n_678.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_6.n_678.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_7.n_589.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_7.n_589.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_8.n_573.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_8.n_573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_9.n_377.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_9.n_377.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_0.n_110.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_0.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_1.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_2.n_72.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_2.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_3.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_4.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_5.n_54.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_5.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_6.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_7.n_34.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_0.n_9566.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_0.n_9566.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_10.n_141.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_10.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_11.n_77.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_11.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_12.n_49.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_12.n_49.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_15.n_35.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_15.n_35.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_1.n_3402.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_1.n_3402.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_3.n_2600.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_3.n_2600.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_7.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_8.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_0.n_5377.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_0.n_5377.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_10.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_11.n_31.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_11.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_1.n_1621.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_1.n_1621.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_2.n_963.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_2.n_963.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_3.n_694.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_3.n_694.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_4.n_164.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_4.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_5.n_114.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_5.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_6.n_107.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_6.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_7.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_8.n_80.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_8.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_9.n_78.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_9.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_0.n_4372.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_0.n_4372.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_1.n_1459.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_1.n_1459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_2.n_493.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_2.n_493.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_3.n_230.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_3.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_4.n_208.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_4.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_7.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_0.n_5595.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_0.n_5595.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_10.n_171.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_10.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_11.n_165.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_11.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_12.n_144.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_12.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_13.n_61.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_13.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_14.n_58.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_14.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_15.n_54.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_15.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_16.n_47.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_16.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_17.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_18.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_19.n_20.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_19.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_1.n_2444.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_1.n_2444.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_2.n_789.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_2.n_789.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_3.n_580.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_3.n_580.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_4.n_457.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_4.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_5.n_381.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_5.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_6.n_363.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_6.n_363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_7.n_333.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_7.n_333.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_8.n_304.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_8.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_9.n_200.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_9.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_0.n_13824.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_0.n_13824.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_10.n_492.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_10.n_492.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_11.n_276.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_11.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_12.n_260.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_12.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_13.n_143.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_13.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_14.n_108.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_14.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_15.n_58.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_15.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_17.n_39.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_17.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_1.n_9758.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_1.n_9758.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_2.n_3244.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_2.n_3244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_3.n_2916.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_3.n_2916.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_4.n_2866.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_4.n_2866.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_5.n_1536.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_5.n_1536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_6.n_1117.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_6.n_1117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_7.n_845.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_7.n_845.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_8.n_614.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_8.n_614.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_9.n_566.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_9.n_566.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_0.n_13753.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_0.n_13753.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_10.n_693.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_10.n_693.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_11.n_336.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_11.n_336.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_12.n_232.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_12.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_13.n_126.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_13.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_14.n_68.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_14.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_15.n_48.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_15.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_16.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_17.n_33.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_17.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_18.n_32.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_18.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_19.n_31.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_19.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_1.n_6071.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_1.n_6071.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_20.n_30.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_20.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_2.n_4373.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_2.n_4373.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_3.n_3543.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_3.n_3543.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_4.n_2442.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_4.n_2442.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_5.n_1772.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_5.n_1772.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_6.n_1269.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_6.n_1269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_7.n_1222.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_7.n_1222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_8.n_1198.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_8.n_1198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_9.n_702.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_9.n_702.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_0.n_490.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_0.n_490.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_10.n_83.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_10.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_11.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_12.n_63.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_12.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_13.n_49.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_13.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_14.n_33.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_14.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_15.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_1.n_372.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_1.n_372.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_2.n_148.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_2.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_3.n_138.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_3.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_4.n_102.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_4.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_5.n_96.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_5.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_6.n_90.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_6.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_7.n_88.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_7.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_8.n_85.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_8.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_9.n_83.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_9.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_0.n_5790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_10.n_203.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_10.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_11.n_172.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_11.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_12.n_161.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_12.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_13.n_136.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_13.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_14.n_130.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_14.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_15.n_124.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_15.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_16.n_111.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_16.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_17.n_91.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_17.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_18.n_69.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_18.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_19.n_62.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_19.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_1.n_2080.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_1.n_2080.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_20.n_55.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_20.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_21.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_2.n_1204.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_2.n_1204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_3.n_827.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_3.n_827.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_4.n_717.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_4.n_717.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_5.n_531.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_5.n_531.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_6.n_429.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_6.n_429.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_7.n_327.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_7.n_327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_8.n_252.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_8.n_252.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_9.n_219.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_9.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-H1-ENCSR000BQG.bestfold.profile.pattern_0.n_1592.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-H1-ENCSR000BQG.bestfold.profile.pattern_0.n_1592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-H1-ENCSR000BQG.bestfold.profile.pattern_1.n_321.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-H1-ENCSR000BQG.bestfold.profile.pattern_1.n_321.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-H1-ENCSR000BQG.bestfold.profile.pattern_2.n_159.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-H1-ENCSR000BQG.bestfold.profile.pattern_2.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-H1-ENCSR000BQG.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-H1-ENCSR000BQG.bestfold.profile.pattern_3.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_0.n_11756.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_0.n_11756.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_10.n_43.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_10.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_11.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_12.n_38.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_12.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_13.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_14.n_32.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_14.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_15.n_29.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_15.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_16.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_17.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_1.n_6151.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_1.n_6151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_2.n_3050.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_2.n_3050.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_3.n_2190.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_3.n_2190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_4.n_719.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_4.n_719.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_5.n_483.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_5.n_483.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_6.n_435.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_6.n_435.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_4.n_159.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_4.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_5.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_6.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_7.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_8.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_9.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_0.n_2515.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_0.n_2515.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_1.n_440.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_1.n_440.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_2.n_356.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_2.n_356.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_3.n_249.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_3.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_4.n_176.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_4.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_5.n_149.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_5.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_6.n_125.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_6.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_7.n_95.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_7.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_0.n_1734.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_0.n_1734.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_1.n_829.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_1.n_829.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_2.n_613.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_2.n_613.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_3.n_599.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_3.n_599.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_4.n_168.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_4.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_5.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_6.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_7.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_8.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_0.n_6340.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_0.n_6340.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_10.n_59.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_10.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_11.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_12.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_13.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_1.n_3790.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_1.n_3790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_2.n_1751.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_2.n_1751.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_3.n_928.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_3.n_928.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_6.n_245.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_6.n_245.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_0.n_31.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_0.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_2.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_0.n_5848.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_0.n_5848.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_10.n_273.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_10.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_11.n_190.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_11.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_12.n_133.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_12.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_13.n_57.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_13.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_14.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_15.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_16.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_17.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_18.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_1.n_4508.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_1.n_4508.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_2.n_2395.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_2.n_2395.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_3.n_1928.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_3.n_1928.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_4.n_796.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_4.n_796.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_5.n_582.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_5.n_582.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_6.n_530.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_6.n_530.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_7.n_458.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_7.n_458.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_8.n_368.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_8.n_368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_9.n_278.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_9.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_0.n_2361.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_0.n_2361.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_10.n_118.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_10.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_11.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_11.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_12.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_12.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_13.n_37.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_13.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_14.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_1.n_1573.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_1.n_1573.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_3.n_855.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_3.n_855.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_4.n_344.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_4.n_344.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_5.n_312.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_5.n_312.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_6.n_289.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_6.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_7.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_8.n_206.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_8.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_9.n_135.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_9.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_0.n_1249.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_0.n_1249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_1.n_236.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_1.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_2.n_162.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_2.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_3.n_155.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_3.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_5.n_101.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_5.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_6.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_7.n_64.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_7.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_8.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_9.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_0.n_4974.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_0.n_4974.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_10.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_10.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_12.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_13.n_29.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_13.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_1.n_774.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_1.n_774.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_2.n_328.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_2.n_328.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_3.n_195.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_3.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_4.n_187.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_4.n_187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_5.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_5.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_6.n_142.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_6.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_7.n_111.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_7.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_8.n_97.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_8.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_9.n_95.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_9.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_0.n_1567.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_0.n_1567.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_1.n_1268.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_1.n_1268.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_2.n_785.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_2.n_785.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_3.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_3.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_4.n_241.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_4.n_241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_5.n_42.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_5.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_6.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_0.n_1151.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_0.n_1151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_1.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_2.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_2.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_3.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_4.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_5.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_5.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_6.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_7.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_8.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_0.n_1409.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_0.n_1409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_1.n_155.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_1.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_2.n_108.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_2.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_3.n_107.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_3.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_4.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_4.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_5.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_6.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_0.n_15649.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_0.n_15649.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_10.n_274.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_10.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_11.n_270.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_11.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_12.n_258.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_12.n_258.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_13.n_229.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_13.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_14.n_195.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_14.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_15.n_188.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_15.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_16.n_185.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_16.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_17.n_177.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_17.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_18.n_148.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_18.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_19.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_19.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_1.n_4136.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_1.n_4136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_20.n_85.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_20.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_21.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_21.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_22.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_22.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_23.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_23.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_24.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_24.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_25.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_25.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_26.n_36.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_26.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_27.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_27.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_28.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_28.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_2.n_1987.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_2.n_1987.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_3.n_1150.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_3.n_1150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_4.n_835.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_4.n_835.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_5.n_652.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_5.n_652.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_6.n_577.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_6.n_577.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_7.n_468.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_7.n_468.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_8.n_334.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_8.n_334.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_9.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_9.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_0.n_2445.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_0.n_2445.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_1.n_493.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_1.n_493.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_2.n_365.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_2.n_365.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_3.n_181.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_3.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_4.n_97.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_4.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_5.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_7.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_0.n_20892.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_0.n_20892.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_10.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_10.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_11.n_123.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_11.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_12.n_112.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_12.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_13.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_14.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_14.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_15.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_15.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_16.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_16.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_17.n_60.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_17.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_18.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_18.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_19.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_1.n_2377.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_1.n_2377.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_2.n_917.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_2.n_917.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_3.n_859.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_3.n_859.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_4.n_690.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_4.n_690.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_5.n_583.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_5.n_583.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_6.n_359.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_6.n_359.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_7.n_355.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_7.n_355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_8.n_235.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_8.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_9.n_195.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_9.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_0.n_20420.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_0.n_20420.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_10.n_214.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_10.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_11.n_208.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_11.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_12.n_168.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_12.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_13.n_163.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_13.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_14.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_14.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_15.n_100.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_15.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_16.n_98.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_16.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_17.n_96.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_17.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_18.n_85.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_18.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_19.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_1.n_1359.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_1.n_1359.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_20.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_20.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_21.n_69.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_21.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_22.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_22.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_23.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_23.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_24.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_24.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_25.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_25.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_26.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_26.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_2.n_1238.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_2.n_1238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_3.n_892.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_3.n_892.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_4.n_693.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_4.n_693.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_5.n_390.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_5.n_390.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_6.n_345.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_6.n_345.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_7.n_315.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_7.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_8.n_306.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_8.n_306.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_9.n_230.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_9.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR345YWJ.bestfold.profile.pattern_0.n_2133.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR345YWJ.bestfold.profile.pattern_0.n_2133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR345YWJ.bestfold.profile.pattern_1.n_481.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR345YWJ.bestfold.profile.pattern_1.n_481.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_0.n_6564.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_0.n_6564.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_10.n_361.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_10.n_361.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_11.n_274.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_11.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_12.n_99.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_12.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_13.n_59.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_13.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_14.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_15.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_1.n_5609.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_1.n_5609.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_2.n_1540.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_2.n_1540.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_3.n_959.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_3.n_959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_4.n_954.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_4.n_954.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_5.n_789.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_5.n_789.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_6.n_684.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_6.n_684.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_7.n_589.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_7.n_589.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_8.n_522.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_8.n_522.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_9.n_484.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_9.n_484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_0.n_6344.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_0.n_6344.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_10.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_10.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_11.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_11.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_1.n_892.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_1.n_892.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_2.n_429.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_2.n_429.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_3.n_244.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_3.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_4.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_4.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_5.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_5.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_6.n_120.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_6.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_7.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_7.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_8.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_9.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_9.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_0.n_4542.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_0.n_4542.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_1.n_1896.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_1.n_1896.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_2.n_367.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_2.n_367.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_3.n_203.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_3.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_4.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_6.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_0.n_856.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_0.n_856.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_10.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_11.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_11.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_1.n_535.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_1.n_535.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_2.n_301.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_2.n_301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_3.n_285.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_3.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_4.n_199.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_4.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_5.n_162.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_5.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_6.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_6.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_7.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_7.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_8.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_9.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_0.n_2820.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_0.n_2820.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_1.n_580.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_1.n_580.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_2.n_332.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_2.n_332.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_3.n_331.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_3.n_331.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_4.n_181.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_4.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_5.n_90.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_5.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_6.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_7.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_8.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_0.n_400.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_0.n_400.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_10.n_131.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_10.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_11.n_119.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_11.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_12.n_108.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_12.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_13.n_104.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_13.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_14.n_84.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_14.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_15.n_61.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_15.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_16.n_51.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_16.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_17.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_1.n_389.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_1.n_389.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_2.n_344.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_2.n_344.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_3.n_284.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_3.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_4.n_276.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_4.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_5.n_273.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_5.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_6.n_268.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_6.n_268.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_7.n_182.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_7.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_8.n_151.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_8.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_9.n_148.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_9.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_0.n_600.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_0.n_600.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_10.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_11.n_63.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_11.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_12.n_61.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_12.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_13.n_57.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_13.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_14.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_15.n_51.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_15.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_16.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_17.n_47.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_17.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_18.n_45.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_18.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_19.n_37.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_19.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_1.n_288.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_1.n_288.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_20.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_21.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_22.n_31.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_22.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_23.n_20.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_23.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_2.n_159.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_2.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_3.n_150.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_3.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_4.n_131.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_4.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_5.n_102.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_5.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_6.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_7.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_8.n_79.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_8.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_0.n_176.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_0.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_10.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_11.n_64.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_11.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_12.n_58.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_12.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_13.n_58.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_13.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_14.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_15.n_54.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_15.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_16.n_51.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_16.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_17.n_49.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_17.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_18.n_43.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_18.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_19.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_1.n_169.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_1.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_20.n_24.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_20.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_2.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_3.n_144.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_3.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_4.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_5.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_6.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_7.n_86.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_7.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_8.n_72.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_8.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_9.n_68.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_9.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_0.n_212.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_0.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_1.n_66.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_1.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_2.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_3.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_4.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_5.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_0.n_5535.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_0.n_5535.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_10.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_1.n_1402.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_1.n_1402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_2.n_765.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_2.n_765.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_3.n_443.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_3.n_443.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_4.n_412.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_4.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_5.n_401.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_5.n_401.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_6.n_365.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_6.n_365.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_7.n_302.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_7.n_302.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_8.n_250.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_8.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_9.n_99.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_9.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_0.n_226.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_0.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_1.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_2.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_6.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_0.n_289.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_0.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_1.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_2.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_5.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_6.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_0.n_138.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_0.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_1.n_36.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_1.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_2.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_0.n_5220.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_0.n_5220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_10.n_262.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_10.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_11.n_225.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_11.n_225.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_12.n_185.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_12.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_13.n_171.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_13.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_14.n_162.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_14.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_15.n_150.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_15.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_16.n_147.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_16.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_17.n_140.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_17.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_18.n_101.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_18.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_19.n_93.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_19.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_1.n_1451.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_1.n_1451.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_20.n_78.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_20.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_21.n_75.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_21.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_22.n_69.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_22.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_23.n_67.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_23.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_24.n_65.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_24.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_25.n_60.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_25.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_26.n_53.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_26.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_27.n_48.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_27.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_28.n_42.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_28.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_29.n_33.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_29.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_2.n_1322.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_2.n_1322.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_30.n_24.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_30.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_3.n_1243.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_3.n_1243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_4.n_791.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_4.n_791.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_5.n_630.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_5.n_630.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_6.n_594.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_6.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_7.n_498.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_7.n_498.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_8.n_385.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_8.n_385.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_9.n_344.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_9.n_344.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_0.n_2719.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_0.n_2719.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_10.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_11.n_72.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_11.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_12.n_60.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_12.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_13.n_53.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_13.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_14.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_16.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_17.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_1.n_394.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_1.n_394.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_2.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_3.n_225.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_3.n_225.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_4.n_200.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_4.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_5.n_155.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_5.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_6.n_132.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_6.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_7.n_129.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_7.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_8.n_102.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_8.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_9.n_93.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_9.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_0.n_679.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_0.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_1.n_189.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_1.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_2.n_181.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_2.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_3.n_77.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_3.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_4.n_66.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_4.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_5.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_6.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_6.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_7.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_0.n_346.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_0.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_1.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_2.n_114.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_2.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_3.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_4.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_5.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_6.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_7.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_0.n_679.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_0.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_1.n_189.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_1.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_2.n_181.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_2.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_3.n_77.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_3.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_4.n_66.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_4.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_5.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_6.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_6.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_7.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_0.n_346.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_0.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_1.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_2.n_114.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_2.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_3.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_4.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_5.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_6.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_7.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_13.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_1.n_238.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_1.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_2.n_203.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_2.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_3.n_175.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_3.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_4.n_153.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_4.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_5.n_147.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_5.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_6.n_138.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_6.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_7.n_102.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_7.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_8.n_100.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_8.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_9.n_73.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_9.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_0.n_39.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_0.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_1.n_37.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_1.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_0.n_405.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_0.n_405.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_1.n_246.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_1.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_2.n_100.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_2.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_3.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_4.n_69.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_4.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_5.n_62.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_5.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_6.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_7.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_8.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK599-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK599-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK599-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK599-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_0.n_2032.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_0.n_2032.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_10.n_156.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_10.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_11.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_12.n_129.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_12.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_13.n_89.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_13.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_14.n_71.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_14.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_15.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_1.n_1838.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_1.n_1838.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_2.n_1243.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_2.n_1243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_3.n_868.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_3.n_868.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_4.n_570.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_4.n_570.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_5.n_376.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_5.n_376.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_6.n_367.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_6.n_367.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_7.n_341.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_7.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_8.n_276.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_8.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_9.n_227.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_9.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_0.n_2034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_1.n_518.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_1.n_518.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_2.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_3.n_251.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_3.n_251.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_4.n_127.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_4.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_5.n_92.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_5.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_6.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_7.n_33.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_7.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_8.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_9.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_0.n_8064.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_0.n_8064.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_1.n_1667.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_1.n_1667.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_2.n_1138.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_2.n_1138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_3.n_441.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_3.n_441.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_4.n_399.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_4.n_399.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_5.n_333.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_5.n_333.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_6.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_7.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_0.n_1316.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_0.n_1316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_10.n_104.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_10.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_11.n_100.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_11.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_12.n_92.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_12.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_13.n_76.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_13.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_14.n_64.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_14.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_15.n_44.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_15.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_16.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_17.n_31.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_17.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_18.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_19.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_1.n_981.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_1.n_981.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_2.n_263.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_2.n_263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_3.n_234.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_3.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_4.n_219.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_4.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_5.n_178.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_5.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_6.n_157.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_6.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_7.n_121.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_7.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_8.n_115.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_8.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_9.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_0.n_2424.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_0.n_2424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_10.n_396.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_10.n_396.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_11.n_396.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_11.n_396.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_12.n_388.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_12.n_388.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_13.n_299.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_13.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_14.n_274.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_14.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_15.n_213.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_15.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_16.n_163.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_16.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_17.n_55.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_17.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_18.n_50.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_18.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_1.n_1840.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_1.n_1840.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_2.n_1421.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_2.n_1421.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_3.n_950.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_3.n_950.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_4.n_842.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_4.n_842.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_5.n_758.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_5.n_758.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_6.n_653.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_6.n_653.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_7.n_519.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_7.n_519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_8.n_492.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_8.n_492.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_9.n_460.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_9.n_460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_0.n_610.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_0.n_610.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_10.n_133.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_10.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_11.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_12.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_13.n_30.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_13.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_1.n_540.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_1.n_540.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_2.n_404.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_2.n_404.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_3.n_376.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_3.n_376.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_4.n_280.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_4.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_5.n_244.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_5.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_6.n_244.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_6.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_7.n_228.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_7.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_8.n_154.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_12.n_126.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_12.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_13.n_110.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_13.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_14.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_15.n_52.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_15.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_16.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_17.n_38.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_17.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_18.n_36.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_18.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_19.n_20.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_19.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_1.n_1019.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_1.n_1019.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_2.n_832.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_2.n_832.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_3.n_709.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_3.n_709.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_4.n_693.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_4.n_693.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_5.n_413.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_5.n_413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_6.n_393.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_6.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_7.n_380.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_7.n_380.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_8.n_298.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_8.n_298.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_9.n_235.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_9.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HEK517-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HEK517-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HEK517-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HEK517-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_0.n_1061.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_0.n_1061.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_10.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_1.n_749.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_1.n_749.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_2.n_371.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_2.n_371.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_3.n_221.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_3.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_4.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_5.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_6.n_103.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_6.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_7.n_75.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_7.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_8.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_9.n_31.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_9.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_0.n_28879.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_0.n_28879.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_11.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_1.n_842.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_1.n_842.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_2.n_466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_3.n_236.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_3.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_4.n_205.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_4.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_5.n_202.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_5.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_6.n_136.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_6.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_7.n_130.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_7.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_8.n_76.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_8.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_9.n_59.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_9.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_0.n_645.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_0.n_645.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_10.n_98.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_10.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_11.n_95.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_11.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_12.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_13.n_49.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_13.n_49.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_6.n_134.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_6.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_7.n_132.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_7.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_8.n_118.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_8.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_9.n_115.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_9.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_0.n_10251.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_0.n_10251.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_1.n_1716.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_1.n_1716.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_2.n_1610.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_2.n_1610.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_3.n_1223.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_3.n_1223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_0.n_1022.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_0.n_1022.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_10.n_81.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_10.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_11.n_63.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_11.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_12.n_52.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_12.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_13.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_1.n_274.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_1.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_2.n_255.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_2.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_3.n_181.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_3.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_4.n_176.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_4.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_5.n_153.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_5.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_6.n_143.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_6.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_7.n_134.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_7.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_8.n_93.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_8.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_9.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_0.n_528.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_0.n_528.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_10.n_68.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_10.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_11.n_62.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_11.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_1.n_517.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_1.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_2.n_364.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_2.n_364.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_3.n_209.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_3.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_4.n_187.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_4.n_187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_5.n_154.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_5.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_6.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_7.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_8.n_111.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_8.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_9.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_1.n_699.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_1.n_699.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_2.n_245.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_2.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_3.n_223.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_3.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_4.n_199.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_4.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_5.n_164.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_5.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_6.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_7.n_88.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_7.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_8.n_85.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_8.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_0.n_363.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_0.n_363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_10.n_73.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_10.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_11.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_12.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_13.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_14.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_15.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_16.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_17.n_34.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_17.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_18.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_19.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_1.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_2.n_196.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_2.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_3.n_186.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_3.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_4.n_143.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_4.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_5.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_6.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_7.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_8.n_89.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_8.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_1.n_699.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_1.n_699.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_2.n_245.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_2.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_3.n_223.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_3.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_4.n_199.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_4.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_5.n_164.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_5.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_6.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_7.n_88.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_7.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_8.n_85.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_8.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_0.n_363.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_0.n_363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_10.n_73.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_10.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_11.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_12.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_13.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_14.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_15.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_16.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_17.n_34.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_17.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_18.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_19.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_1.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_2.n_196.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_2.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_3.n_186.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_3.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_4.n_143.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_4.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_5.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_6.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_7.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_8.n_89.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_8.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_0.n_2751.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_0.n_2751.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_1.n_858.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_1.n_858.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_2.n_166.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_2.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_3.n_151.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_3.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_4.n_92.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_4.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_5.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_0.n_1579.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_0.n_1579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_10.n_147.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_10.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_11.n_130.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_11.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_12.n_127.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_12.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_13.n_127.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_13.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_14.n_120.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_14.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_15.n_113.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_15.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_16.n_108.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_16.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_17.n_99.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_17.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_18.n_98.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_18.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_19.n_79.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_19.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_1.n_918.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_1.n_918.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_20.n_68.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_20.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_21.n_60.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_21.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_22.n_52.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_22.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_23.n_44.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_23.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_24.n_42.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_24.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_25.n_38.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_25.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_26.n_28.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_26.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_2.n_909.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_2.n_909.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_3.n_469.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_3.n_469.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_4.n_456.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_4.n_456.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_5.n_417.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_5.n_417.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_6.n_208.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_6.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_7.n_185.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_7.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_8.n_183.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_8.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_9.n_177.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_9.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_0.n_2451.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_0.n_2451.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_10.n_320.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_10.n_320.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_11.n_251.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_11.n_251.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_12.n_248.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_12.n_248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_13.n_193.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_13.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_14.n_182.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_14.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_15.n_88.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_15.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_16.n_47.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_16.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_17.n_30.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_17.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_18.n_26.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_18.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_19.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_1.n_1874.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_1.n_1874.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_2.n_1099.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_2.n_1099.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_3.n_976.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_3.n_976.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_4.n_738.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_4.n_738.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_5.n_657.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_5.n_657.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_6.n_566.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_6.n_566.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_7.n_509.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_7.n_509.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_8.n_401.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_8.n_401.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_9.n_339.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_9.n_339.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_0.n_1286.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_0.n_1286.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_10.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_11.n_31.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_11.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_12.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_1.n_699.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_1.n_699.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_3.n_490.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_3.n_490.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_5.n_432.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_5.n_432.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_6.n_405.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_6.n_405.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_7.n_358.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_7.n_358.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_8.n_195.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_8.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_9.n_186.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_9.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF514-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_0.n_837.CWM.meme motif-alignments-all-vs-all/ZNF514/ZNF514-201-vs-ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_0.n_837.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF514-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_1.n_180.CWM.meme motif-alignments-all-vs-all/ZNF514/ZNF514-201-vs-ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_1.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF514-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_2.n_111.CWM.meme motif-alignments-all-vs-all/ZNF514/ZNF514-201-vs-ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_2.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_0.n_214.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_0.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_1.n_123.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_1.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_2.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_3.n_67.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_3.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_4.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_0.n_2066.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_0.n_2066.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_10.n_442.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_10.n_442.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_11.n_418.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_11.n_418.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_12.n_229.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_12.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_13.n_186.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_13.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_14.n_125.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_14.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_15.n_89.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_15.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_1.n_1493.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_1.n_1493.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_2.n_1091.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_2.n_1091.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_5.n_758.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_5.n_758.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_6.n_660.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_6.n_660.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_7.n_602.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_7.n_602.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_8.n_565.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_8.n_565.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_9.n_448.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_9.n_448.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_6.n_105.CWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_6.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_7.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_0.n_1582.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_0.n_1582.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_10.n_262.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_10.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_11.n_186.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_11.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_12.n_155.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_12.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_13.n_145.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_13.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_14.n_138.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_14.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_15.n_103.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_15.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_16.n_55.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_16.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_17.n_30.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_17.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_1.n_1372.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_1.n_1372.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_2.n_531.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_2.n_531.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_3.n_381.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_3.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_4.n_317.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_4.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_5.n_296.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_5.n_296.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_6.n_285.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_6.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_7.n_278.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_7.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_8.n_276.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_8.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_9.n_269.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_9.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_0.n_443.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_0.n_443.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_10.n_69.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_10.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_12.n_57.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_12.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_13.n_26.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_13.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_14.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_1.n_112.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_1.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_2.n_110.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_2.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_3.n_105.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_3.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_4.n_97.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_4.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_5.n_89.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_5.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_6.n_86.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_6.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_7.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_8.n_75.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_8.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_9.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_0.n_1612.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_0.n_1612.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_10.n_110.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_10.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_11.n_85.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_11.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_12.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_13.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_14.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_15.n_43.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_15.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_16.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_17.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_18.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_1.n_1329.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_1.n_1329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_2.n_1091.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_2.n_1091.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_3.n_1001.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_3.n_1001.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_4.n_953.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_4.n_953.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_5.n_277.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_5.n_277.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_6.n_199.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_6.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_7.n_199.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_7.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_8.n_197.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_8.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_9.n_141.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_9.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_0.n_306.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_0.n_306.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_10.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_1.n_161.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_1.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_2.n_124.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_2.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_3.n_117.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_3.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_4.n_84.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_4.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_5.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_6.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_7.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_8.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_9.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_0.n_619.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_0.n_619.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_10.n_121.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_10.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_11.n_110.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_11.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_12.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_13.n_89.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_13.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_14.n_81.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_14.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_15.n_67.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_15.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_16.n_61.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_16.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_17.n_60.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_17.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_18.n_58.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_18.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_19.n_57.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_19.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_1.n_555.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_1.n_555.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_20.n_50.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_20.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_2.n_526.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_2.n_526.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_3.n_403.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_3.n_403.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_4.n_374.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_4.n_374.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_5.n_310.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_5.n_310.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_6.n_216.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_6.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_7.n_186.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_7.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_8.n_147.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_8.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_9.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_0.n_4500.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_0.n_4500.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_10.n_61.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_10.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_11.n_40.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_11.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_12.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_13.n_39.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_13.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_14.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_15.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_16.n_29.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_16.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_17.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_18.n_25.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_18.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_19.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_1.n_214.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_1.n_214.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_3.n_195.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_3.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_4.n_140.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_4.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_5.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_6.n_105.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_6.n_105.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_9.n_76.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_11.n_61.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_11.n_61.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_11.n_40.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_11.n_40.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_15.n_30.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_17.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_1.n_6662.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_1.n_6662.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_4.n_1078.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_4.n_1078.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_5.n_602.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_5.n_602.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_7.n_237.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_7.n_237.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_9.n_117.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_9.n_117.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_3.n_1298.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_3.n_1298.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_4.n_753.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_4.n_753.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_5.n_448.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_5.n_448.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_9.n_126.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_9.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_0.n_1360.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_0.n_1360.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_10.n_241.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_10.n_241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_11.n_241.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_11.n_241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_12.n_235.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_12.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_13.n_199.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_13.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_14.n_181.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_14.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_15.n_134.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_15.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_16.n_95.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_16.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_17.n_60.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_17.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_18.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_19.n_33.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_19.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_1.n_1277.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_1.n_1277.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_2.n_911.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_2.n_911.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_3.n_610.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_3.n_610.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_4.n_334.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_4.n_334.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_5.n_312.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_5.n_312.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_6.n_281.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_6.n_281.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_7.n_278.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_7.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_8.n_257.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_8.n_257.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_9.n_244.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_9.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_0.n_204.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_0.n_204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_10.n_44.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_10.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_11.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_12.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_13.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_1.n_126.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_1.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_2.n_114.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_2.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_3.n_101.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_3.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_4.n_93.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_4.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_5.n_92.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_5.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_6.n_70.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_6.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_7.n_60.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_7.n_60.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_9.n_45.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_9.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_0.n_1624.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_0.n_1624.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_10.n_147.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_10.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_11.n_115.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_11.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_12.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_13.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_1.n_755.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_1.n_755.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_2.n_621.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_2.n_621.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_3.n_459.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_3.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_4.n_443.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_4.n_443.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_5.n_325.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_5.n_325.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_6.n_277.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_6.n_277.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_7.n_248.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_7.n_248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_8.n_225.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_8.n_225.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_9.n_189.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_9.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF426-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_0.n_10016.CWM.meme motif-alignments-all-vs-all/ZNF426/ZNF426-201-vs-ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_0.n_10016.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF426-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_1.n_45.CWM.meme motif-alignments-all-vs-all/ZNF426/ZNF426-201-vs-ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_1.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_0.n_291.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_0.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_1.n_240.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_1.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_2.n_185.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_2.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_3.n_161.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_3.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_4.n_103.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_4.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_5.n_72.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_5.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_6.n_65.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_6.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_7.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_0.n_661.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_0.n_661.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_1.n_626.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_1.n_626.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_2.n_137.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_2.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_3.n_120.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_3.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_4.n_112.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_4.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_5.n_89.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_5.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_6.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_7.n_63.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_7.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_8.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_9.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_0.n_3800.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_0.n_3800.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_10.n_196.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_10.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_11.n_181.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_11.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_12.n_169.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_12.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_13.n_103.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_13.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_14.n_103.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_14.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_15.n_101.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_15.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_16.n_86.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_16.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_17.n_86.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_17.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_18.n_83.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_18.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_19.n_68.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_19.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_1.n_3129.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_1.n_3129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_20.n_67.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_20.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_21.n_63.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_21.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_22.n_47.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_22.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_23.n_34.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_23.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_24.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_2.n_1996.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_2.n_1996.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_3.n_1401.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_3.n_1401.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_4.n_672.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_4.n_672.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_5.n_550.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_5.n_550.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_6.n_508.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_6.n_508.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_7.n_410.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_7.n_410.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_8.n_320.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_8.n_320.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_9.n_222.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_9.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_0.n_5773.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_0.n_5773.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_10.n_167.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_10.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_11.n_167.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_11.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_12.n_98.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_12.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_13.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_14.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_15.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_1.n_2418.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_1.n_2418.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_2.n_2364.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_2.n_2364.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_3.n_2033.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_3.n_2033.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_0.n_3545.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_0.n_3545.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_1.n_1614.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_1.n_1614.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_2.n_1247.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_2.n_1247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_0.n_1526.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_0.n_1526.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_10.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_11.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_12.n_40.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_12.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_13.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_1.n_327.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_1.n_327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_2.n_226.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_2.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_3.n_219.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_3.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_4.n_209.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_4.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_5.n_203.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_5.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_6.n_183.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_6.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_7.n_150.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_7.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_8.n_92.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_8.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_9.n_67.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_9.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_0.n_1880.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_0.n_1880.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_1.n_87.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_1.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_2.n_60.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_2.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_0.n_5278.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_0.n_5278.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_13.n_185.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_13.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_14.n_167.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_14.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_15.n_160.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_15.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_16.n_143.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_16.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_17.n_107.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_17.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_18.n_91.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_18.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_19.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_1.n_4551.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_1.n_4551.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_20.n_54.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_20.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_21.n_53.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_21.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_22.n_53.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_22.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_23.n_43.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_23.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_24.n_38.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_24.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_25.n_26.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_25.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_26.n_23.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_26.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_2.n_1671.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_2.n_1671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_3.n_1357.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_3.n_1357.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_4.n_856.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_4.n_856.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_5.n_397.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_5.n_397.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_6.n_303.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_6.n_303.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_7.n_285.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_7.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_8.n_269.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_8.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_9.n_239.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_9.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_0.n_351.CWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_0.n_351.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_1.n_80.CWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_1.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_2.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_3.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_4.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_0.n_1041.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_0.n_1041.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_10.n_107.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_10.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_11.n_96.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_11.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_12.n_86.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_12.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_13.n_76.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_13.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_14.n_65.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_14.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_15.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_16.n_59.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_16.n_59.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_18.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_19.n_34.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_19.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_1.n_616.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_1.n_616.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_20.n_24.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_20.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_2.n_466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_3.n_318.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_3.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_4.n_307.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_4.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_5.n_288.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_5.n_288.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_6.n_281.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_6.n_281.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_7.n_228.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_7.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_8.n_174.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_8.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_9.n_119.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_9.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_0.n_658.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_0.n_658.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_10.n_56.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_10.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_11.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_12.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_13.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_14.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_15.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_16.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_1.n_145.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_1.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_2.n_130.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_2.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_3.n_123.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_3.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_4.n_115.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_4.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_5.n_100.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_5.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_6.n_95.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_6.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_7.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_8.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_8.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_9.n_60.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_16.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_1.n_1702.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_1.n_1702.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_2.n_523.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_2.n_523.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_3.n_499.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_3.n_499.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_4.n_432.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_4.n_432.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_5.n_385.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_5.n_385.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_6.n_363.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_6.n_363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_7.n_355.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_7.n_355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_8.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_9.n_163.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_9.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_0.n_658.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_0.n_658.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_10.n_56.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_10.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_11.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_12.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_13.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_14.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_15.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_16.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_1.n_145.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_1.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_2.n_130.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_2.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_3.n_123.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_3.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_4.n_115.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_4.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_5.n_100.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_5.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_6.n_95.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_6.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_7.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_8.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_8.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_0.n_3057.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_0.n_3057.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_10.n_134.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_10.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_11.n_108.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_11.n_108.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_3.n_499.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_3.n_499.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_4.n_432.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_4.n_432.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_5.n_385.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_5.n_385.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_6.n_363.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_6.n_363.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_8.n_210.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_0.n_5721.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_0.n_5721.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_10.n_79.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_2.n_1600.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_2.n_1600.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_0.n_1097.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_0.n_1097.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_10.n_88.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_10.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_11.n_54.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_11.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_12.n_38.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_12.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_1.n_521.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_1.n_521.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_2.n_402.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_2.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_3.n_286.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_3.n_286.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_4.n_261.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_4.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_5.n_260.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_5.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_6.n_248.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_6.n_248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_7.n_232.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_7.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_8.n_182.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_8.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_9.n_168.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_9.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_10.n_201.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_10.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_11.n_169.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_11.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_12.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_13.n_119.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_13.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_14.n_98.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_14.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_15.n_96.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_15.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_16.n_68.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_16.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_17.n_61.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_17.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_18.n_46.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_18.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_1.n_788.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_1.n_788.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_20.n_41.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_20.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_21.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_22.n_25.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_22.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_23.n_24.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_23.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_24.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_25.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_2.n_750.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_2.n_750.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_3.n_746.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_3.n_746.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_4.n_677.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_4.n_677.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_5.n_578.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_5.n_578.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_6.n_512.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_6.n_512.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_7.n_335.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_7.n_335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_8.n_293.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_8.n_293.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_9.n_283.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_9.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_0.n_1097.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_0.n_1097.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_10.n_88.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_10.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_11.n_54.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_11.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_12.n_38.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_12.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_1.n_521.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_1.n_521.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_2.n_402.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_2.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_3.n_286.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_3.n_286.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_4.n_261.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_4.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_5.n_260.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_5.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_6.n_248.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_6.n_248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_7.n_232.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_7.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_8.n_182.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_8.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_9.n_168.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_9.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_10.n_201.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_10.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_11.n_169.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_11.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_12.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_13.n_119.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_13.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_14.n_98.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_14.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_15.n_96.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_15.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_16.n_68.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_16.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_17.n_61.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_17.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_18.n_46.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_18.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_1.n_788.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_1.n_788.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_20.n_41.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_20.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_21.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_22.n_25.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_22.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_23.n_24.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_23.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_24.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_25.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_2.n_750.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_2.n_750.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_3.n_746.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_3.n_746.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_4.n_677.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_4.n_677.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_5.n_578.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_5.n_578.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_6.n_512.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_6.n_512.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_7.n_335.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_7.n_335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_8.n_293.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_8.n_293.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_9.n_283.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_9.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_0.n_724.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_0.n_724.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_10.n_78.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_10.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_11.n_66.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_11.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_12.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_13.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_14.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_1.n_132.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_1.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_2.n_116.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_2.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_3.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_4.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_5.n_98.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_5.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_8.n_83.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_8.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_9.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_0.n_724.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_0.n_724.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_10.n_78.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_10.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_11.n_66.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_11.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_12.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_13.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_14.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_1.n_132.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_1.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_2.n_116.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_2.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_3.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_4.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_5.n_98.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_5.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_8.n_83.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_8.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_9.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_0.n_2712.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_0.n_2712.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_10.n_203.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_10.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_11.n_150.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_11.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_12.n_123.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_12.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_13.n_114.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_13.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_14.n_81.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_14.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_15.n_66.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_15.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_16.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_17.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_18.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_1.n_2308.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_1.n_2308.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_2.n_871.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_2.n_871.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_3.n_718.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_3.n_718.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_4.n_447.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_4.n_447.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_5.n_410.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_5.n_410.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_6.n_259.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_6.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_7.n_239.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_7.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_8.n_238.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_8.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_9.n_223.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_9.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_0.n_2320.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_0.n_2320.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_10.n_185.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_10.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_11.n_176.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_11.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_12.n_173.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_12.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_13.n_156.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_13.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_14.n_119.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_14.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_15.n_110.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_15.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_16.n_108.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_16.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_17.n_37.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_17.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_1.n_773.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_1.n_773.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_2.n_455.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_2.n_455.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_3.n_444.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_3.n_444.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_4.n_352.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_4.n_352.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_5.n_340.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_5.n_340.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_6.n_330.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_6.n_330.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_7.n_308.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_7.n_308.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_8.n_279.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_8.n_279.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_9.n_203.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_9.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_0.n_224.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_0.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_1.n_105.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_1.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_2.n_75.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_2.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_3.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_4.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_7.n_30.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_7.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_8.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_0.n_615.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_0.n_615.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_10.n_163.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_10.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_11.n_149.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_11.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_12.n_129.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_12.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_13.n_100.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_13.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_14.n_96.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_14.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_15.n_90.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_15.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_16.n_85.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_16.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_17.n_82.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_17.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_18.n_40.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_18.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_19.n_36.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_19.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_1.n_576.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_1.n_576.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_20.n_28.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_20.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_2.n_571.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_2.n_571.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_3.n_446.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_3.n_446.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_4.n_410.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_4.n_410.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_5.n_259.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_5.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_6.n_242.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_6.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_7.n_221.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_7.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_8.n_205.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_8.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_9.n_166.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_9.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_0.n_4734.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_0.n_4734.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_10.n_291.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_10.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_11.n_276.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_11.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_12.n_274.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_12.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_13.n_213.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_13.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_14.n_113.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_14.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_15.n_94.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_15.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_16.n_73.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_16.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_17.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_18.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_19.n_23.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_19.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_1.n_3757.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_1.n_3757.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_20.n_22.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_20.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_2.n_1833.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_2.n_1833.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_3.n_1534.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_3.n_1534.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_4.n_1131.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_4.n_1131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_5.n_744.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_5.n_744.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_6.n_549.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_6.n_549.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_7.n_534.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_7.n_534.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_8.n_368.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_8.n_368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_9.n_294.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_9.n_294.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_0.n_5255.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_0.n_5255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_10.n_132.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_10.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_11.n_86.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_11.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_12.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_13.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_1.n_3333.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_1.n_3333.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_2.n_1266.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_2.n_1266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_3.n_506.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_3.n_506.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_4.n_473.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_4.n_473.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_5.n_279.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_5.n_279.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_6.n_265.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_6.n_265.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_7.n_230.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_7.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_8.n_179.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_8.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_9.n_150.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_9.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_0.n_490.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_0.n_490.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_10.n_95.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_10.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_11.n_92.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_11.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_12.n_88.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_12.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_13.n_84.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_13.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_14.n_83.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_14.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_15.n_82.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_15.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_16.n_80.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_16.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_17.n_79.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_17.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_18.n_72.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_18.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_19.n_63.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_19.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_1.n_298.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_1.n_298.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_20.n_36.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_20.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_21.n_24.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_21.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_22.n_23.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_22.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_23.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_2.n_208.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_2.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_3.n_203.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_3.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_4.n_202.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_4.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_5.n_144.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_5.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_6.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_7.n_123.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_7.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_8.n_99.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_8.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_9.n_95.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_9.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_0.n_2205.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_0.n_2205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_10.n_261.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_10.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_11.n_247.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_11.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_12.n_234.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_12.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_13.n_232.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_13.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_14.n_141.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_14.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_15.n_70.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_15.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_16.n_61.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_16.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_17.n_59.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_17.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_18.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_1.n_1477.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_1.n_1477.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_2.n_1127.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_2.n_1127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_3.n_793.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_3.n_793.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_4.n_674.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_4.n_674.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_5.n_412.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_5.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_6.n_394.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_6.n_394.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_7.n_370.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_7.n_370.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_8.n_335.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_8.n_335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_9.n_280.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_9.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_0.n_30.CWM.meme motif-alignments-all-vs-all/ZNF496/ZNF496-201-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_0.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all/ZNF496/ZNF496-201-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_1.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZNF496/ZNF496-201-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_2.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF496/ZNF496-201-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_0.n_9864.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_0.n_9864.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_10.n_107.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_10.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_11.n_93.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_11.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_12.n_85.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_12.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_13.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_14.n_49.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_14.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_15.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_1.n_1874.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_1.n_1874.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_2.n_587.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_2.n_587.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_3.n_581.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_3.n_581.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_4.n_337.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_4.n_337.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_5.n_314.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_5.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_7.n_188.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_7.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_8.n_184.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_8.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_9.n_113.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_9.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_0.n_2066.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_0.n_2066.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_10.n_136.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_10.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_11.n_110.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_11.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_12.n_103.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_12.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_13.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_14.n_61.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_14.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_15.n_43.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_15.n_43.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_17.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_1.n_1474.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_1.n_1474.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_2.n_1456.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_2.n_1456.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_3.n_484.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_3.n_484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_4.n_377.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_4.n_377.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_5.n_356.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_5.n_356.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_6.n_348.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_6.n_348.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_7.n_269.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_7.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_8.n_231.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_8.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_9.n_178.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_9.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_0.n_679.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_0.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_1.n_629.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_1.n_629.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_2.n_182.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_2.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_3.n_149.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_3.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_4.n_112.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_4.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_5.n_22.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_8.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_9.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_0.n_984.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_0.n_984.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_10.n_115.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_10.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_11.n_112.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_11.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_12.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_13.n_65.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_13.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_14.n_61.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_14.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_15.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_16.n_41.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_16.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_17.n_36.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_17.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_18.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_19.n_34.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_19.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_1.n_817.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_1.n_817.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_20.n_34.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_20.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_21.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_22.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_2.n_431.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_2.n_431.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_3.n_275.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_3.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_4.n_268.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_4.n_268.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_5.n_257.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_5.n_257.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_6.n_233.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_6.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_7.n_233.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_7.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_8.n_181.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_8.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_9.n_176.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_9.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_0.n_275.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_0.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_10.n_34.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_10.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_11.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_12.n_33.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_12.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_1.n_126.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_1.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_2.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_3.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_4.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_5.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_6.n_56.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_6.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_7.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_8.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_9.n_35.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_9.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_0.n_1393.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_0.n_1393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_1.n_188.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_1.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_2.n_72.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_2.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_3.n_68.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_3.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_4.n_41.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_4.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_5.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_6.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_0.n_279.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_0.n_279.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_10.n_66.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_10.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_11.n_49.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_11.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_12.n_49.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_12.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_13.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_14.n_29.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_14.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_15.n_27.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_15.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_16.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_17.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_18.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_1.n_248.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_1.n_248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_2.n_198.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_2.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_3.n_140.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_3.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_4.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_5.n_86.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_5.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_6.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_7.n_76.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_7.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_8.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_9.n_71.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_9.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_0.n_9700.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_0.n_9700.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_1.n_1636.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_1.n_1636.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_2.n_1403.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_2.n_1403.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_3.n_1007.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_3.n_1007.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_4.n_466.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_4.n_466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_5.n_132.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_5.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_6.n_67.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_6.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_8.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_0.n_123.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_0.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_1.n_116.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_1.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_2.n_97.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_2.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_3.n_90.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_3.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_5.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_6.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_7.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_0.n_9700.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_0.n_9700.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_1.n_1636.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_1.n_1636.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_2.n_1403.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_2.n_1403.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_3.n_1007.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_3.n_1007.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_4.n_466.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_4.n_466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_5.n_132.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_5.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_6.n_67.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_6.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_8.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_0.n_123.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_0.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_1.n_116.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_1.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_2.n_97.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_2.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_3.n_90.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_3.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_5.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_6.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_7.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_0.n_4249.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_0.n_4249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_10.n_379.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_10.n_379.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_11.n_360.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_11.n_360.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_12.n_301.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_12.n_301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_13.n_234.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_13.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_14.n_201.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_14.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_15.n_146.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_15.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_16.n_125.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_16.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_17.n_71.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_17.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_18.n_49.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_18.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_19.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_1.n_3027.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_1.n_3027.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_20.n_24.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_20.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_21.n_23.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_21.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_2.n_2126.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_2.n_2126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_3.n_1972.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_3.n_1972.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_4.n_1915.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_4.n_1915.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_5.n_1046.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_5.n_1046.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_6.n_756.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_6.n_756.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_7.n_551.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_7.n_551.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_8.n_419.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_8.n_419.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_9.n_411.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_9.n_411.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_0.n_1721.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_0.n_1721.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_11.n_40.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_11.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_12.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_1.n_840.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_1.n_840.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_2.n_228.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_2.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_3.n_159.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_3.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_4.n_153.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_4.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_5.n_111.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_5.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_6.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_8.n_58.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_8.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_9.n_48.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_9.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_10.n_338.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_10.n_338.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_11.n_272.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_11.n_272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_12.n_228.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_12.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_13.n_225.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_13.n_225.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_14.n_219.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_14.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_15.n_209.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_15.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_16.n_203.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_16.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_17.n_182.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_17.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_18.n_124.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_18.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_19.n_66.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_19.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_1.n_2211.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_1.n_2211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_2.n_1051.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_2.n_1051.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_3.n_893.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_3.n_893.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_4.n_753.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_4.n_753.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_5.n_518.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_5.n_518.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_6.n_418.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_6.n_418.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_7.n_369.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_7.n_369.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_8.n_355.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_8.n_355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_9.n_355.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_9.n_355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_0.n_139.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_0.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_10.n_40.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_10.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_11.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_12.n_37.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_12.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_13.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_14.n_28.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_14.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_15.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_15.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_1.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_2.n_100.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_2.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_3.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_4.n_90.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_4.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_5.n_90.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_5.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_6.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_7.n_70.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_7.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_8.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_9.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_10.n_338.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_10.n_338.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_11.n_272.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_11.n_272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_12.n_228.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_12.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_13.n_225.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_13.n_225.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_14.n_219.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_14.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_15.n_209.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_15.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_16.n_203.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_16.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_17.n_182.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_17.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_18.n_124.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_18.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_19.n_66.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_19.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_1.n_2211.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_1.n_2211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_2.n_1051.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_2.n_1051.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_3.n_893.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_3.n_893.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_4.n_753.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_4.n_753.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_5.n_518.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_5.n_518.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_6.n_418.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_6.n_418.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_7.n_369.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_7.n_369.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_8.n_355.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_8.n_355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_9.n_355.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_9.n_355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_0.n_139.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_0.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_10.n_40.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_10.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_11.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_12.n_37.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_12.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_13.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_14.n_28.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_14.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_15.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_15.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_1.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_2.n_100.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_2.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_3.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_4.n_90.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_4.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_5.n_90.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_5.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_6.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_7.n_70.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_7.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_8.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_9.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_0.n_22088.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_0.n_22088.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_1.n_434.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_1.n_434.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_0.n_15899.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_0.n_15899.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_10.n_184.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_10.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_11.n_176.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_11.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_12.n_131.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_12.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_13.n_117.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_13.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_14.n_114.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_14.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_15.n_110.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_15.n_110.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_18.n_66.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_18.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_19.n_39.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_19.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_1.n_1231.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_1.n_1231.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_0.n_18117.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_0.n_18117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_10.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_11.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_12.n_30.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_12.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_1.n_661.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_1.n_661.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_2.n_577.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_2.n_577.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_3.n_359.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_3.n_359.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_4.n_193.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_4.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_5.n_145.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_5.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_6.n_125.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_6.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_7.n_78.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_7.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_8.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_9.n_44.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_9.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_0.n_22587.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_0.n_22587.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_10.n_158.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_10.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_11.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_12.n_114.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_12.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_13.n_106.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_13.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_14.n_95.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_14.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_15.n_91.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_15.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_16.n_82.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_16.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_17.n_50.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_17.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_18.n_40.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_18.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_19.n_37.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_19.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_1.n_673.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_1.n_673.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_20.n_35.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_20.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_21.n_29.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_21.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_22.n_25.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_22.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_23.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_2.n_540.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_2.n_540.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_3.n_494.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_3.n_494.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_4.n_357.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_4.n_357.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_5.n_233.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_5.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_6.n_199.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_6.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_7.n_194.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_7.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_8.n_184.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_8.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_9.n_183.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_9.n_183.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_10.n_66.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_10.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_11.n_28.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_11.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_12.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_1.n_654.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_1.n_654.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_4.n_223.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_7.n_135.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_7.n_135.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_0.n_465.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_0.n_465.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_13.n_84.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_13.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_14.n_36.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_14.n_36.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_2.n_308.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_2.n_308.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_1.n_1335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_2.n_1119.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_2.n_1119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_3.n_306.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_3.n_306.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_4.n_283.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_4.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_5.n_237.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_5.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_6.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_7.n_85.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_7.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_8.n_79.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_8.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_9.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_0.n_3053.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_0.n_3053.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_10.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_11.n_146.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_11.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_12.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_13.n_89.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_13.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_14.n_88.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_14.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_15.n_81.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_15.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_16.n_59.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_16.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_17.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_18.n_26.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_18.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_19.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_1.n_2638.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_1.n_2638.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_2.n_2543.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_2.n_2543.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_3.n_469.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_3.n_469.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_4.n_323.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_4.n_323.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_5.n_289.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_5.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_6.n_276.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_6.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_7.n_262.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_7.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_8.n_219.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_8.n_219.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_10.n_208.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_10.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_11.n_163.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_11.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_12.n_138.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_12.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_13.n_128.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_13.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_14.n_97.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_14.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_16.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_17.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_1.n_3594.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_1.n_3594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_2.n_2076.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_2.n_2076.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_3.n_1938.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_3.n_1938.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_4.n_1634.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_4.n_1634.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_5.n_1580.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_5.n_1580.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_6.n_1418.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_6.n_1418.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_7.n_973.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_7.n_973.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_8.n_870.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_8.n_870.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_9.n_329.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_9.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_0.n_5280.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_0.n_5280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_10.n_191.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_10.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_11.n_128.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_11.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_12.n_90.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_12.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_13.n_60.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_13.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_14.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_15.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_16.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_17.n_24.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_17.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_18.n_23.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_18.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_19.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_1.n_1062.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_1.n_1062.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_2.n_939.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_2.n_939.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_3.n_933.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_3.n_933.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_4.n_756.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_4.n_756.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_5.n_668.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_5.n_668.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_6.n_668.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_6.n_668.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_7.n_393.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_7.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_8.n_341.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_8.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_9.n_270.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_9.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_10.n_208.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_10.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_11.n_163.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_11.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_12.n_138.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_12.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_13.n_128.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_13.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_14.n_97.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_14.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_16.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_17.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_1.n_3594.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_1.n_3594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_2.n_2076.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_2.n_2076.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_3.n_1938.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_3.n_1938.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_4.n_1634.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_4.n_1634.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_5.n_1580.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_5.n_1580.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_6.n_1418.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_6.n_1418.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_7.n_973.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_7.n_973.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_8.n_870.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_8.n_870.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_9.n_329.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_9.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_0.n_5280.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_0.n_5280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_10.n_191.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_10.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_11.n_128.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_11.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_12.n_90.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_12.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_13.n_60.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_13.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_14.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_15.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_16.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_17.n_24.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_17.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_18.n_23.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_18.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_19.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_1.n_1062.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_1.n_1062.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_2.n_939.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_2.n_939.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_3.n_933.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_3.n_933.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_4.n_756.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_4.n_756.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_5.n_668.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_5.n_668.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_6.n_668.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_6.n_668.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_7.n_393.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_7.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_8.n_341.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_8.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_9.n_270.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_9.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_0.n_6437.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_0.n_6437.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_10.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_1.n_3095.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_1.n_3095.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_2.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_3.n_286.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_3.n_286.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_4.n_271.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_4.n_271.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_5.n_181.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_5.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_6.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_7.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_8.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_9.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_0.n_269.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_0.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_10.n_81.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_10.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_11.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_12.n_58.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_12.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_13.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_14.n_54.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_14.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_15.n_51.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_15.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_16.n_51.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_16.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_17.n_37.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_17.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_18.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_19.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_1.n_120.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_1.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_20.n_23.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_20.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_2.n_115.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_2.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_3.n_114.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_3.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_4.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_5.n_107.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_5.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_6.n_99.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_6.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_7.n_90.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_7.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_8.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_9.n_83.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_9.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_0.n_237.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_0.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_1.n_188.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_1.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_2.n_151.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_2.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_3.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_4.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_5.n_49.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_5.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_6.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_7.n_33.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_7.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_8.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_9.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_0.n_3696.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_0.n_3696.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_10.n_379.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_10.n_379.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_11.n_265.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_11.n_265.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_12.n_180.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_12.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_13.n_62.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_13.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_14.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_15.n_48.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_15.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_16.n_39.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_16.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_17.n_35.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_17.n_35.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_1.n_2996.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_1.n_2996.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_20.n_26.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_20.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_2.n_2377.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_2.n_2377.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_3.n_1151.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_3.n_1151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_4.n_1138.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_4.n_1138.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_10.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_11.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_12.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_13.n_36.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_13.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_14.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_1.n_133.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_1.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_2.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_3.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_4.n_76.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_4.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_5.n_68.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_5.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_6.n_62.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_6.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_7.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_8.n_48.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_8.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_9.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_0.n_566.CWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_0.n_566.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_2.n_203.CWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_2.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_3.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_4.n_50.CWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_4.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_0.n_1701.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_0.n_1701.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_2.n_440.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_2.n_440.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_3.n_308.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_3.n_308.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_6.n_67.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_6.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_7.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_8.n_44.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_8.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_0.n_1732.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_0.n_1732.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_11.n_251.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_11.n_251.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_18.n_46.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_18.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_19.n_43.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_19.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_1.n_1510.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_1.n_1510.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_20.n_38.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_20.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_21.n_33.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_21.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_22.n_21.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_22.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_23.n_20.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_23.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_2.n_1340.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_2.n_1340.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_3.n_1104.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_3.n_1104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_4.n_715.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_4.n_715.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_5.n_637.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_5.n_637.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_6.n_621.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_6.n_621.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_7.n_504.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_7.n_504.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_8.n_457.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_8.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_9.n_380.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_9.n_380.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_0.n_1155.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_0.n_1155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_10.n_227.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_10.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_11.n_155.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_11.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_12.n_114.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_12.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_13.n_110.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_13.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_14.n_81.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_14.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_15.n_78.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_15.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_16.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_1.n_1115.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_1.n_1115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_2.n_398.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_2.n_398.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_3.n_389.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_3.n_389.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_4.n_377.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_4.n_377.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_5.n_328.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_5.n_328.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_6.n_303.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_6.n_303.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_7.n_276.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_7.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_8.n_229.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_8.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_9.n_228.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_9.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_0.n_1805.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_0.n_1805.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_10.n_261.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_10.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_11.n_228.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_11.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_12.n_183.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_12.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_13.n_182.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_13.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_14.n_175.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_14.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_15.n_165.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_15.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_16.n_109.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_16.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_17.n_87.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_17.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_18.n_85.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_18.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_19.n_80.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_19.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_1.n_1751.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_1.n_1751.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_20.n_72.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_20.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_21.n_52.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_21.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_22.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_23.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_2.n_1198.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_2.n_1198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_3.n_479.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_3.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_4.n_447.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_4.n_447.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_5.n_399.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_5.n_399.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_6.n_383.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_6.n_383.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_7.n_331.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_7.n_331.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_8.n_294.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_8.n_294.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_9.n_270.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_9.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_10.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_11.n_28.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_11.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_12.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_13.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_1.n_2196.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_1.n_2196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_2.n_1778.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_2.n_1778.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_3.n_1570.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_3.n_1570.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_4.n_1063.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_4.n_1063.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_5.n_856.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_5.n_856.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_6.n_779.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_6.n_779.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_7.n_143.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_7.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_8.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_9.n_48.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_9.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_10.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_11.n_28.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_11.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_12.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_13.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_1.n_2196.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_1.n_2196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_2.n_1778.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_2.n_1778.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_3.n_1570.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_3.n_1570.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_4.n_1063.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_4.n_1063.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_5.n_856.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_5.n_856.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_6.n_779.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_6.n_779.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_7.n_143.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_7.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_8.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_9.n_48.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_9.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_0.n_1228.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_0.n_1228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_10.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_11.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_12.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_1.n_1194.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_1.n_1194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_2.n_965.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_2.n_965.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_3.n_791.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_3.n_791.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_4.n_157.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_4.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_5.n_154.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_5.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_6.n_122.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_6.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_7.n_74.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_7.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_8.n_62.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_8.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_9.n_58.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_9.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_0.n_8846.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_0.n_8846.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_10.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_1.n_7397.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_1.n_7397.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_2.n_1127.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_2.n_1127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_3.n_635.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_3.n_635.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_4.n_246.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_4.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_5.n_164.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_5.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_6.n_144.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_6.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_7.n_119.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_7.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_8.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_9.n_75.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_9.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_0.n_2271.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_0.n_2271.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_1.n_443.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_1.n_443.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_2.n_159.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_2.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_3.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_4.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_5.n_124.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_5.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_6.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_7.n_97.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_7.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_8.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_0.n_925.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_0.n_925.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_10.n_37.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_10.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_1.n_255.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_1.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_2.n_252.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_2.n_252.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_3.n_209.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_3.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_4.n_144.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_4.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_5.n_122.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_5.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_6.n_119.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_6.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_7.n_93.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_7.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_8.n_64.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_8.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_9.n_40.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_9.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_0.n_1028.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_0.n_1028.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_1.n_963.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_1.n_963.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_2.n_219.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_2.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_3.n_121.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_3.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_4.n_98.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_4.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_5.n_86.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_5.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_6.n_83.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_6.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_7.n_78.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_7.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_8.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_9.n_45.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_9.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_0.n_2478.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_0.n_2478.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_10.n_231.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_10.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_11.n_194.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_11.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_12.n_126.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_12.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_13.n_104.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_13.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_14.n_85.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_14.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_15.n_55.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_15.n_55.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_4.n_452.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_4.n_452.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_5.n_432.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_5.n_432.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_6.n_335.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_6.n_335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_7.n_306.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_7.n_306.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_8.n_272.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_8.n_272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_9.n_269.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_9.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_0.n_99.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_0.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_10.n_37.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_10.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_1.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_2.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_3.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_4.n_55.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_4.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_5.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_6.n_48.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_6.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_7.n_47.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_7.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_8.n_43.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_8.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_9.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_0.n_520.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_0.n_520.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_11.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_12.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_1.n_206.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_1.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_2.n_179.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_2.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_3.n_134.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_3.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_4.n_69.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_4.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_6.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_7.n_48.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_7.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_8.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_9.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_0.n_15888.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_0.n_15888.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_1.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_2.n_71.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_2.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_3.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_4.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_5.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_7.n_26.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_7.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_8.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_0.n_567.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_0.n_567.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_10.n_186.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_10.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_11.n_179.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_11.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_12.n_176.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_12.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_13.n_166.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_13.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_14.n_159.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_14.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_15.n_159.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_15.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_16.n_141.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_16.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_17.n_132.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_17.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_18.n_128.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_18.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_19.n_121.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_19.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_1.n_566.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_1.n_566.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_20.n_118.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_20.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_21.n_77.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_21.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_22.n_67.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_22.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_23.n_58.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_23.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_24.n_35.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_24.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_2.n_553.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_2.n_553.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_3.n_442.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_3.n_442.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_4.n_352.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_4.n_352.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_5.n_294.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_5.n_294.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_6.n_252.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_6.n_252.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_7.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_8.n_205.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_8.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_9.n_197.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_9.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_0.n_567.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_0.n_567.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_10.n_186.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_10.n_186.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_12.n_176.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_12.n_176.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_1.n_566.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_1.n_566.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_20.n_118.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_20.n_118.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_22.n_67.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_22.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_23.n_58.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_23.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_24.n_35.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_24.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_2.n_553.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_2.n_553.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_3.n_442.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_3.n_442.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_5.n_294.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_5.n_294.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_6.n_252.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_6.n_252.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_7.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_8.n_205.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_8.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_9.n_197.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_9.n_197.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_0.n_4053.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_0.n_4053.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_10.n_348.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_10.n_348.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_11.n_246.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_11.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_12.n_206.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_12.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_13.n_203.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_13.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_14.n_146.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_14.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_15.n_129.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_15.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_16.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_17.n_39.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_17.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_1.n_2390.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_1.n_2390.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_2.n_1588.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_2.n_1588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_3.n_1275.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_3.n_1275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_4.n_1083.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_4.n_1083.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_5.n_712.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_5.n_712.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_6.n_646.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_6.n_646.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_7.n_388.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_7.n_388.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_8.n_383.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_8.n_383.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_9.n_380.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_9.n_380.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_0.n_3456.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_0.n_3456.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_2.n_706.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_2.n_706.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_7.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_0.n_150.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_0.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_10.n_39.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_10.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_11.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_12.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_13.n_22.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_15.n_21.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_4.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_5.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_6.n_56.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_6.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_7.n_48.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_7.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_8.n_44.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_8.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_9.n_40.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_9.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_0.n_17315.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_0.n_17315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_10.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_11.n_27.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_11.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_12.n_27.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_12.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_1.n_3111.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_1.n_3111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_2.n_2525.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_2.n_2525.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_3.n_986.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_3.n_986.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_4.n_186.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_4.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_5.n_175.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_5.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_6.n_143.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_6.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_7.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_8.n_113.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_8.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_9.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_0.n_14917.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_0.n_14917.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_10.n_168.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_10.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_11.n_150.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_11.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_12.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_13.n_112.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_13.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_14.n_58.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_14.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_15.n_43.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_15.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_1.n_4092.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_1.n_4092.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_2.n_1877.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_2.n_1877.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_3.n_1708.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_3.n_1708.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_4.n_538.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_4.n_538.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_5.n_398.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_5.n_398.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_6.n_369.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_6.n_369.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_7.n_313.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_7.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_8.n_248.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_8.n_248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_9.n_197.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_9.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_0.n_2603.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_0.n_2603.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_1.n_708.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_1.n_708.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_2.n_674.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_2.n_674.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_3.n_355.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_3.n_355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_4.n_273.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_4.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_5.n_168.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_5.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_6.n_90.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_6.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_7.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_8.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_0.n_9508.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_0.n_9508.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_10.n_136.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_10.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_11.n_91.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_11.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_12.n_90.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_12.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_13.n_67.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_13.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_14.n_62.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_14.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_15.n_52.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_15.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_16.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_17.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_1.n_1815.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_1.n_1815.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_2.n_647.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_2.n_647.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_3.n_560.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_3.n_560.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_4.n_344.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_4.n_344.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_5.n_244.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_5.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_6.n_203.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_6.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_7.n_196.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_7.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_8.n_195.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_8.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_9.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_0.n_3644.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_0.n_3644.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_10.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_11.n_31.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_11.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_12.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_13.n_26.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_13.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_14.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_15.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_1.n_1389.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_1.n_1389.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_2.n_192.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_2.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_3.n_109.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_3.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_4.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_5.n_85.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_5.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_6.n_83.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_6.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_7.n_64.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_7.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_8.n_53.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_8.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_9.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HEK336-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HEK336-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_1.n_804.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_1.n_804.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_2.n_320.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_2.n_320.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_3.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_4.n_107.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_4.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_5.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_6.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HEK336-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HEK336-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_0.n_17014.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_0.n_17014.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_10.n_91.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_10.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_11.n_80.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_11.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_12.n_77.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_12.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_13.n_68.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_13.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_14.n_68.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_14.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_15.n_60.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_15.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_16.n_39.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_16.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_17.n_31.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_17.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_18.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_19.n_23.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_19.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_1.n_1133.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_1.n_1133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_2.n_686.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_2.n_686.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_3.n_395.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_3.n_395.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_4.n_371.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_4.n_371.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_5.n_341.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_5.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_6.n_289.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_6.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_7.n_284.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_7.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_8.n_238.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_8.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_9.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_0.n_2181.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_0.n_2181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_10.n_128.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_10.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_11.n_101.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_11.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_12.n_100.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_12.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_13.n_77.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_13.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_14.n_76.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_14.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_15.n_66.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_15.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_16.n_57.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_16.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_17.n_48.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_17.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_18.n_47.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_18.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_19.n_43.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_19.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_1.n_689.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_1.n_689.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_20.n_34.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_20.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_21.n_29.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_21.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_22.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_23.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_24.n_27.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_24.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_25.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_26.n_24.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_26.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_27.n_24.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_27.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_2.n_392.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_2.n_392.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_3.n_361.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_3.n_361.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_4.n_203.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_4.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_5.n_181.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_5.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_6.n_174.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_6.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_7.n_162.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_7.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_8.n_158.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_8.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_9.n_155.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_9.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_0.n_2841.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_0.n_2841.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_10.n_193.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_10.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_11.n_177.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_11.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_12.n_155.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_12.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_13.n_112.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_13.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_14.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_15.n_93.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_15.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_16.n_89.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_16.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_17.n_86.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_17.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_18.n_71.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_18.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_19.n_68.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_19.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_1.n_1007.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_1.n_1007.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_20.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_21.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_22.n_26.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_22.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_23.n_21.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_23.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_2.n_994.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_2.n_994.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_3.n_914.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_3.n_914.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_4.n_665.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_4.n_665.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_5.n_564.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_5.n_564.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_6.n_444.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_6.n_444.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_7.n_421.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_7.n_421.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_8.n_407.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_8.n_407.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_9.n_213.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_9.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_0.n_388.CWM.meme motif-alignments-all-vs-all/ZNF280C/ZNF280C-201-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_0.n_388.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_1.n_161.CWM.meme motif-alignments-all-vs-all/ZNF280C/ZNF280C-201-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_1.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF280C/ZNF280C-201-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_2.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF280C/ZNF280C-201-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_3.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_0.n_1430.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_0.n_1430.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_10.n_195.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_10.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_11.n_187.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_11.n_187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_12.n_176.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_12.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_13.n_168.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_13.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_14.n_154.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_14.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_15.n_148.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_15.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_16.n_138.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_16.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_17.n_127.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_17.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_18.n_124.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_18.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_19.n_112.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_19.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_1.n_1257.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_1.n_1257.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_20.n_63.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_20.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_21.n_56.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_21.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_22.n_52.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_22.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_23.n_48.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_23.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_24.n_42.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_24.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_25.n_35.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_25.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_26.n_30.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_26.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_27.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_2.n_1239.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_2.n_1239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_3.n_820.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_3.n_820.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_4.n_503.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_4.n_503.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_5.n_285.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_5.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_6.n_284.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_6.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_7.n_261.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_7.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_8.n_216.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_8.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_9.n_204.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_9.n_204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_0.n_431.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_0.n_431.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_11.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_12.n_20.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_2.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_3.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_4.n_57.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_4.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_5.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_6.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_7.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_8.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_9.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_13.n_125.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_13.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_14.n_119.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_14.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_15.n_115.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_15.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_16.n_104.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_16.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_17.n_103.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_17.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_18.n_102.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_18.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_19.n_87.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_19.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_1.n_362.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_1.n_362.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_20.n_87.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_20.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_21.n_86.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_21.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_22.n_62.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_22.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_23.n_60.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_23.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_24.n_58.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_24.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_25.n_49.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_25.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_26.n_47.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_26.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_27.n_44.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_27.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_28.n_42.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_28.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_29.n_38.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_29.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_2.n_345.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_2.n_345.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_30.n_38.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_30.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_31.n_36.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_31.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_32.n_32.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_32.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_33.n_31.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_33.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_34.n_31.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_34.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_35.n_30.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_35.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_36.n_24.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_36.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_37.n_22.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_37.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_38.n_22.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_38.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_39.n_20.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_39.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_3.n_341.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_3.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_40.n_20.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_40.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_4.n_337.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_4.n_337.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_5.n_223.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_5.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_6.n_179.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_6.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_7.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_8.n_158.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_8.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_9.n_154.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_9.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_0.n_6064.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_0.n_6064.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_10.n_338.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_10.n_338.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_11.n_331.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_11.n_331.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_12.n_311.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_12.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_13.n_269.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_13.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_14.n_267.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_14.n_267.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_15.n_256.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_15.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_16.n_246.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_16.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_17.n_234.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_17.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_18.n_231.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_18.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_19.n_210.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_19.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_1.n_1895.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_1.n_1895.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_20.n_175.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_20.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_21.n_170.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_21.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_22.n_163.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_22.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_23.n_143.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_23.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_24.n_132.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_24.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_25.n_129.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_25.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_26.n_125.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_26.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_27.n_114.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_27.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_28.n_106.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_28.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_29.n_100.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_29.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_2.n_1064.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_2.n_1064.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_30.n_99.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_30.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_31.n_94.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_31.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_32.n_81.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_32.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_33.n_79.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_33.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_34.n_74.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_34.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_35.n_73.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_35.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_36.n_60.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_36.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_37.n_59.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_37.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_38.n_54.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_38.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_39.n_51.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_39.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_3.n_1025.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_3.n_1025.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_40.n_34.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_40.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_41.n_28.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_41.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_42.n_27.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_42.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_43.n_27.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_43.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_44.n_23.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_44.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_4.n_1018.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_4.n_1018.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_5.n_711.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_5.n_711.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_6.n_700.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_6.n_700.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_7.n_521.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_7.n_521.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_8.n_461.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_8.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_9.n_384.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_9.n_384.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_0.n_72.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_0.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_10.n_36.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_10.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_11.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_12.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_13.n_28.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_13.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_14.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_1.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_2.n_60.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_2.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_3.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_4.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_5.n_50.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_5.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_6.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_7.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_8.n_44.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_8.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_9.n_41.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_9.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_11.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_12.n_46.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_12.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_13.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_14.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_15.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_16.n_31.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_16.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_17.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_18.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_1.n_199.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_1.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_2.n_152.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_2.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_3.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_4.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_5.n_78.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_5.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_6.n_78.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_6.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_7.n_74.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_7.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_8.n_72.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_8.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_11.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_12.n_46.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_12.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_13.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_14.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_15.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_16.n_31.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_16.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_17.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_18.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_1.n_199.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_1.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_2.n_152.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_2.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_3.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_4.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_5.n_78.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_5.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_6.n_78.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_6.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_7.n_74.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_7.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_8.n_72.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_8.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_0.n_2516.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_0.n_2516.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_10.n_277.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_10.n_277.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_11.n_243.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_11.n_243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_12.n_207.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_12.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_13.n_95.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_13.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_14.n_88.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_14.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_15.n_85.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_15.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_16.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_1.n_1300.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_1.n_1300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_2.n_1145.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_2.n_1145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_3.n_1140.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_3.n_1140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_4.n_1021.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_4.n_1021.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_5.n_710.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_5.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_6.n_560.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_6.n_560.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_7.n_508.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_7.n_508.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_8.n_374.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_8.n_374.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_9.n_311.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_9.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_0.n_6169.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_0.n_6169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_10.n_200.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_10.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_11.n_169.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_11.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_12.n_165.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_12.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_13.n_115.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_13.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_14.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_15.n_75.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_15.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_16.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_1.n_4230.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_1.n_4230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_2.n_2612.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_2.n_2612.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_3.n_2353.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_3.n_2353.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_4.n_2223.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_4.n_2223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_5.n_2137.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_5.n_2137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_6.n_658.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_6.n_658.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_7.n_449.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_7.n_449.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_8.n_429.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_8.n_429.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_9.n_260.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_9.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_0.n_172.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_0.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_10.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_1.n_85.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_1.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_2.n_81.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_2.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_3.n_81.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_3.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_4.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_5.n_67.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_5.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_6.n_52.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_6.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_7.n_48.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_7.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_8.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_0.n_2238.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_0.n_2238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_10.n_215.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_10.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_11.n_117.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_11.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_12.n_57.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_12.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_13.n_57.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_13.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_14.n_56.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_14.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_1.n_1186.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_1.n_1186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_2.n_855.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_2.n_855.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_3.n_706.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_3.n_706.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_4.n_620.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_4.n_620.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_5.n_544.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_5.n_544.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_6.n_335.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_6.n_335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_7.n_307.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_7.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_8.n_293.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_8.n_293.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_9.n_251.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_9.n_251.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_0.n_243.CWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_0.n_243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_1.n_165.CWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_1.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_2.n_87.CWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_2.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_3.n_81.CWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_3.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_4.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_6.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_0.n_3441.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_0.n_3441.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_10.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_11.n_34.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_11.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_12.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_14.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_1.n_1269.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_1.n_1269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_2.n_1092.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_2.n_1092.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_3.n_664.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_3.n_664.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_4.n_367.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_4.n_367.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_6.n_162.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_6.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_7.n_76.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_7.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_8.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_9.n_61.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_9.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_0.n_5462.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_0.n_5462.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_10.n_305.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_10.n_305.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_11.n_228.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_11.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_12.n_218.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_12.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_13.n_161.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_13.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_14.n_146.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_14.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_15.n_142.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_15.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_16.n_128.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_16.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_17.n_97.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_17.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_18.n_77.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_18.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_19.n_69.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_19.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_1.n_4127.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_1.n_4127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_20.n_65.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_20.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_21.n_61.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_21.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_22.n_47.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_22.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_23.n_40.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_23.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_24.n_29.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_24.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_25.n_28.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_25.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_26.n_28.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_26.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_27.n_26.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_27.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_2.n_3013.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_2.n_3013.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_3.n_2776.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_3.n_2776.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_4.n_2639.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_4.n_2639.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_5.n_2062.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_5.n_2062.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_6.n_1060.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_6.n_1060.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_7.n_586.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_7.n_586.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_8.n_388.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_8.n_388.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_9.n_308.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_9.n_308.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_0.n_69.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_0.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_1.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_2.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_3.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_4.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_5.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_6.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_7.n_26.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_7.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_8.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_0.n_1431.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_0.n_1431.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_10.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_11.n_78.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_11.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_12.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_13.n_74.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_13.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_14.n_54.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_14.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_15.n_38.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_15.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_16.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_17.n_33.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_17.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_1.n_563.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_1.n_563.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_2.n_198.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_2.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_3.n_159.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_3.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_4.n_118.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_4.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_5.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_6.n_100.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_6.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_7.n_100.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_7.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_8.n_97.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_8.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_9.n_93.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_9.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_0.n_7643.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_0.n_7643.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_10.n_118.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_10.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_11.n_87.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_11.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_12.n_65.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_12.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_13.n_53.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_13.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_14.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_1.n_1439.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_1.n_1439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_2.n_1122.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_2.n_1122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_3.n_535.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_3.n_535.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_4.n_398.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_4.n_398.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_5.n_363.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_5.n_363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_6.n_355.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_6.n_355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_7.n_349.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_7.n_349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_8.n_214.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_8.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_9.n_214.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_9.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK542-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK542-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK542-Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK542-Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_0.n_299.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_0.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_10.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_1.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_2.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_3.n_60.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_3.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_4.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_5.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_6.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_7.n_33.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_7.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_8.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_9.n_31.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_9.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_0.n_21524.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_0.n_21524.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_10.n_51.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_10.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_11.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_12.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_13.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_14.n_24.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_14.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_1.n_3965.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_1.n_3965.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_2.n_1886.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_2.n_1886.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_3.n_1410.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_3.n_1410.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_4.n_378.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_4.n_378.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_5.n_321.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_5.n_321.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_6.n_240.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_6.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_7.n_224.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_7.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_8.n_127.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_8.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_9.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_0.n_1738.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_0.n_1738.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_10.n_379.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_10.n_379.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_11.n_308.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_11.n_308.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_12.n_257.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_12.n_257.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_13.n_92.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_13.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_14.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_15.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_16.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_1.n_1617.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_1.n_1617.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_2.n_1012.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_2.n_1012.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_3.n_1011.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_3.n_1011.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_4.n_829.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_4.n_829.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_5.n_549.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_5.n_549.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_6.n_508.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_6.n_508.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_7.n_472.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_7.n_472.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_8.n_405.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_8.n_405.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_9.n_393.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_9.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_0.n_2455.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_0.n_2455.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_10.n_431.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_10.n_431.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_11.n_314.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_11.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_12.n_311.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_12.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_13.n_303.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_13.n_303.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_14.n_208.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_14.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_15.n_168.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_15.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_16.n_163.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_16.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_17.n_146.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_17.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_18.n_143.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_18.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_19.n_143.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_19.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_1.n_1316.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_1.n_1316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_20.n_116.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_20.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_21.n_102.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_21.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_22.n_82.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_22.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_23.n_68.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_23.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_24.n_44.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_24.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_25.n_33.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_25.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_26.n_30.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_26.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_2.n_1146.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_2.n_1146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_3.n_1116.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_3.n_1116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_4.n_921.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_4.n_921.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_5.n_735.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_5.n_735.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_6.n_708.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_6.n_708.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_7.n_637.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_7.n_637.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_8.n_592.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_8.n_592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_9.n_502.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_9.n_502.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_0.n_2352.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_0.n_2352.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_10.n_198.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_10.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_11.n_197.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_11.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_12.n_71.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_12.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_13.n_43.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_13.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_1.n_798.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_1.n_798.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_2.n_715.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_2.n_715.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_3.n_676.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_3.n_676.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_4.n_527.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_4.n_527.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_5.n_361.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_5.n_361.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_6.n_285.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_6.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_7.n_285.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_7.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_8.n_255.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_8.n_255.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_10.n_58.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_12.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_13.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_14.n_29.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_14.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_15.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_16.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_1.n_142.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_1.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_2.n_136.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_2.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_3.n_132.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_3.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_4.n_122.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_4.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_5.n_117.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_5.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_6.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_7.n_86.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_7.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_8.n_72.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_8.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_9.n_63.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_9.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_0.n_1466.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_0.n_1466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_10.n_135.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_10.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_11.n_97.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_11.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_12.n_87.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_12.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_13.n_77.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_13.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_14.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_15.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_1.n_886.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_1.n_886.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_2.n_886.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_2.n_886.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_3.n_677.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_3.n_677.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_4.n_407.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_4.n_407.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_5.n_292.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_5.n_292.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_6.n_286.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_6.n_286.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_7.n_186.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_7.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_8.n_159.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_8.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_9.n_139.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_9.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_0.n_9564.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_0.n_9564.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_10.n_281.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_10.n_281.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_11.n_170.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_11.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_12.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_13.n_118.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_13.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_14.n_101.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_14.n_101.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_16.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_16.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_17.n_43.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_17.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_19.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_1.n_4518.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_1.n_4518.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_2.n_3801.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_2.n_3801.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_3.n_3137.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_3.n_3137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_4.n_1056.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_4.n_1056.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_5.n_608.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_5.n_608.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_6.n_599.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_6.n_599.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_7.n_475.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_7.n_475.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_8.n_387.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_8.n_387.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_9.n_302.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_9.n_302.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_0.n_663.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_0.n_663.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_10.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_10.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_11.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_11.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_12.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_12.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_13.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_13.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_14.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_15.n_66.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_15.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_16.n_64.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_16.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_17.n_54.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_21.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_22.n_30.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_10.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_12.n_20.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_2.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_3.n_31.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_5.n_27.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_11.n_170.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_11.n_170.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_12.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_12.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_13.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_13.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_14.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_15.n_66.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_15.n_66.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_17.n_54.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_19.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_19.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_1.n_450.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_1.n_450.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_20.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_20.n_38.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_2.n_408.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_2.n_408.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_5.n_137.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_5.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_6.n_123.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_6.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_7.n_89.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_7.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_8.n_89.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_8.n_89.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_10.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_11.n_36.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_11.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_1.n_352.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_1.n_352.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_2.n_229.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_2.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_3.n_175.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_3.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_4.n_147.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_4.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_5.n_98.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_5.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_6.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_7.n_79.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_7.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_8.n_78.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_8.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_9.n_66.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_9.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HEK342-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HEK342-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_0.n_1331.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_0.n_1331.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_10.n_207.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_10.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_11.n_175.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_11.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_12.n_174.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_12.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_13.n_117.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_13.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_14.n_115.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_14.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_15.n_111.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_15.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_16.n_103.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_16.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_17.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_18.n_81.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_18.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_19.n_46.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_19.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_1.n_1180.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_1.n_1180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_20.n_45.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_20.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_21.n_34.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_21.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_22.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_23.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_2.n_912.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_2.n_912.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_3.n_469.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_3.n_469.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_4.n_346.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_4.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_5.n_294.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_5.n_294.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_6.n_257.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_6.n_257.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_1.n_4964.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_1.n_4964.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_2.n_121.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_2.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_3.n_96.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_3.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_0.n_11181.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_0.n_11181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_10.n_101.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_10.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_11.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_12.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_13.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_14.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_1.n_8703.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_1.n_8703.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_2.n_8515.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_2.n_8515.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_3.n_365.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_3.n_365.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_4.n_327.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_4.n_327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_5.n_295.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_5.n_295.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_6.n_266.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_6.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_7.n_220.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_7.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_8.n_130.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_8.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_9.n_119.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_9.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_0.n_1128.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_0.n_1128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_10.n_64.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_10.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_11.n_59.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_11.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_12.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_13.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_14.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_1.n_375.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_1.n_375.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_2.n_220.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_2.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_3.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_4.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_5.n_93.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_5.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_6.n_89.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_6.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_7.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_8.n_75.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_8.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_9.n_66.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_9.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_0.n_2123.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_0.n_2123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_10.n_158.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_10.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_11.n_118.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_11.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_12.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_13.n_53.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_13.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_14.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_15.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_1.n_1788.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_1.n_1788.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_2.n_515.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_2.n_515.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_3.n_449.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_3.n_449.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_4.n_423.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_4.n_423.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_5.n_373.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_5.n_373.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_6.n_342.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_6.n_342.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_7.n_291.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_7.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_8.n_238.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_8.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_9.n_197.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_9.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_0.n_6959.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_0.n_6959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_10.n_545.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_10.n_545.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_11.n_416.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_11.n_416.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_12.n_373.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_12.n_373.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_13.n_338.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_13.n_338.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_14.n_256.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_14.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_15.n_243.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_15.n_243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_16.n_238.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_16.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_17.n_195.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_17.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_18.n_180.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_18.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_19.n_138.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_19.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_1.n_5053.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_1.n_5053.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_20.n_89.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_20.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_21.n_60.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_21.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_22.n_52.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_22.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_23.n_51.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_23.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_24.n_38.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_24.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_25.n_29.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_25.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_26.n_22.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_26.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_27.n_22.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_27.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_28.n_21.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_28.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_29.n_20.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_29.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_2.n_1959.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_2.n_1959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_30.n_20.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_30.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_3.n_1610.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_3.n_1610.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_4.n_1045.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_4.n_1045.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_5.n_979.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_5.n_979.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_6.n_971.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_6.n_971.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_7.n_959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_8.n_701.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_8.n_701.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_9.n_569.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_9.n_569.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_0.n_2636.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_0.n_2636.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_10.n_171.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_10.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_11.n_168.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_11.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_12.n_163.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_12.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_13.n_140.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_13.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_14.n_132.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_14.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_15.n_115.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_15.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_16.n_82.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_16.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_17.n_73.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_17.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_18.n_56.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_18.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_19.n_48.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_19.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_1.n_1637.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_1.n_1637.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_20.n_47.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_20.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_21.n_42.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_21.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_22.n_39.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_22.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_23.n_33.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_23.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_24.n_27.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_24.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_2.n_1329.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_2.n_1329.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_6.n_346.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_6.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_7.n_320.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_7.n_320.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_15.n_38.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_15.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_16.n_28.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_16.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_1.n_1875.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_1.n_1875.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_2.n_1648.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_2.n_1648.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_3.n_1074.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_3.n_1074.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_4.n_621.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_4.n_621.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_5.n_345.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_5.n_345.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_6.n_191.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_6.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_7.n_142.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_7.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_8.n_127.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_8.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_9.n_123.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_9.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK374-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK374-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK374-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK374-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_0.n_455.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_0.n_455.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_1.n_293.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_1.n_293.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_2.n_162.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_2.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_3.n_153.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_3.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_4.n_114.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_4.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_5.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_6.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_7.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_8.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_0.n_1680.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_0.n_1680.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_10.n_104.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_10.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_11.n_84.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_11.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_12.n_72.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_12.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_13.n_58.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_13.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_14.n_56.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_14.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_15.n_44.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_15.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_16.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_19.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_1.n_1275.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_1.n_1275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_2.n_935.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_2.n_935.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_3.n_777.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_3.n_777.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_4.n_591.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_4.n_591.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_5.n_553.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_5.n_553.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_6.n_445.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_6.n_445.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_7.n_445.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_7.n_445.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_8.n_396.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_8.n_396.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_9.n_146.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_9.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_0.n_1721.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_0.n_1721.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_10.n_408.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_10.n_408.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_11.n_278.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_11.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_12.n_231.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_12.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_13.n_231.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_13.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_14.n_215.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_14.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_15.n_202.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_15.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_16.n_143.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_16.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_17.n_143.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_17.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_18.n_117.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_18.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_19.n_61.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_19.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_1.n_1561.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_1.n_1561.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_20.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_21.n_48.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_21.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_22.n_42.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_22.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_23.n_33.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_23.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_24.n_22.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_24.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_2.n_982.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_2.n_982.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_3.n_860.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_3.n_860.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_4.n_804.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_4.n_804.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_5.n_560.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_5.n_560.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_6.n_559.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_6.n_559.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_7.n_541.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_7.n_541.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_8.n_528.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_8.n_528.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_9.n_460.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_9.n_460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_0.n_898.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_0.n_898.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_10.n_139.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_10.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_11.n_124.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_11.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_12.n_114.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_12.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_13.n_104.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_13.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_14.n_95.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_14.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_15.n_88.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_15.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_16.n_87.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_16.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_17.n_72.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_17.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_18.n_43.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_18.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_19.n_39.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_19.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_1.n_840.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_1.n_840.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_20.n_23.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_20.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_2.n_585.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_2.n_585.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_3.n_471.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_3.n_471.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_4.n_460.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_4.n_460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_5.n_325.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_5.n_325.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_6.n_249.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_6.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_7.n_189.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_7.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_8.n_156.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_8.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_9.n_143.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_9.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_0.n_1102.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_0.n_1102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_10.n_311.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_10.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_11.n_291.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_11.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_12.n_289.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_12.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_13.n_285.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_13.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_14.n_249.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_14.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_15.n_178.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_15.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_16.n_148.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_16.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_17.n_129.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_17.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_18.n_93.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_18.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_19.n_78.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_19.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_1.n_504.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_1.n_504.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_20.n_72.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_20.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_21.n_46.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_21.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_22.n_36.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_22.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_2.n_503.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_2.n_503.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_3.n_456.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_3.n_456.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_4.n_450.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_4.n_450.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_5.n_376.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_5.n_376.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_6.n_371.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_6.n_371.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_7.n_345.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_7.n_345.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_8.n_344.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_8.n_344.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_9.n_322.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_9.n_322.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_0.n_236.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_0.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_10.n_90.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_10.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_11.n_86.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_11.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_12.n_77.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_12.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_13.n_76.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_13.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_14.n_68.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_14.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_15.n_54.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_15.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_16.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_17.n_37.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_17.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_18.n_36.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_18.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_1.n_226.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_1.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_2.n_204.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_2.n_204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_3.n_165.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_3.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_4.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_5.n_146.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_5.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_6.n_123.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_6.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_7.n_116.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_7.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_8.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_9.n_93.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_9.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_0.n_13283.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_0.n_13283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_10.n_250.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_10.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_11.n_202.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_11.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_12.n_159.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_12.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_13.n_148.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_13.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_14.n_141.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_14.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_15.n_140.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_15.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_16.n_72.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_16.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_17.n_48.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_17.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_18.n_43.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_18.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_19.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_1.n_3334.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_1.n_3334.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_20.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_21.n_20.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_21.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_2.n_2250.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_2.n_2250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_3.n_2129.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_3.n_2129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_4.n_2111.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_4.n_2111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_5.n_724.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_5.n_724.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_6.n_632.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_6.n_632.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_7.n_404.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_7.n_404.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_8.n_327.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_8.n_327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_9.n_317.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_9.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_13.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_1.n_682.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_1.n_682.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_2.n_454.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_2.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_3.n_305.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_3.n_305.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_4.n_252.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_4.n_252.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_5.n_223.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_5.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_6.n_120.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_6.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_7.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_8.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_9.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_0.n_4280.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_0.n_4280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_11.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_1.n_3788.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_1.n_3788.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_2.n_3317.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_2.n_3317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_3.n_1741.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_3.n_1741.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_4.n_1336.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_4.n_1336.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_5.n_949.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_5.n_949.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_6.n_648.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_6.n_648.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_7.n_340.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_7.n_340.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_8.n_152.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_8.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_9.n_82.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_9.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_0.n_3352.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_0.n_3352.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_10.n_194.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_10.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_11.n_175.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_11.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_12.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_13.n_30.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_13.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_1.n_2856.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_1.n_2856.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_2.n_1730.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_2.n_1730.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_3.n_998.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_3.n_998.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_4.n_328.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_4.n_328.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_5.n_328.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_5.n_328.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_6.n_260.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_6.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_7.n_249.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_7.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_8.n_243.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_8.n_243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_9.n_211.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_9.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_0.n_2275.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_0.n_2275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_10.n_44.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_10.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_1.n_409.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_1.n_409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_2.n_399.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_2.n_399.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_3.n_369.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_3.n_369.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_4.n_316.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_4.n_316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_5.n_304.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_5.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_6.n_259.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_6.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_7.n_172.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_7.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_8.n_138.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_8.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_9.n_102.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_9.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_0.n_1224.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_0.n_1224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_10.n_28.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_10.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_1.n_345.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_1.n_345.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_2.n_114.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_2.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_3.n_101.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_3.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_4.n_75.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_4.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_5.n_72.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_5.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_6.n_56.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_6.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_7.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_9.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_0.n_6743.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_0.n_6743.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_10.n_192.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_10.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_11.n_164.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_11.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_12.n_160.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_12.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_13.n_134.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_13.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_14.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_15.n_94.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_15.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_16.n_82.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_16.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_17.n_67.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_17.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_18.n_50.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_18.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_19.n_37.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_19.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_1.n_3888.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_1.n_3888.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_20.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_21.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_22.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_2.n_895.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_2.n_895.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_3.n_564.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_3.n_564.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_4.n_393.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_4.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_5.n_349.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_5.n_349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_6.n_296.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_6.n_296.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_7.n_254.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_7.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_8.n_243.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_8.n_243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_9.n_227.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_9.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_0.n_3410.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_0.n_3410.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_10.n_82.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_10.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_11.n_52.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_11.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_12.n_52.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_12.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_13.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_14.n_36.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_14.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_15.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_16.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_1.n_1919.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_1.n_1919.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_2.n_1743.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_2.n_1743.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_3.n_602.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_3.n_602.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_4.n_586.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_4.n_586.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_5.n_506.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_5.n_506.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_6.n_406.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_6.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_7.n_301.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_7.n_301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_8.n_227.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_8.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_9.n_179.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_9.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_0.n_4068.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_0.n_4068.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_10.n_77.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_10.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_1.n_2129.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_1.n_2129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_2.n_1836.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_2.n_1836.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_3.n_1817.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_3.n_1817.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_4.n_851.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_4.n_851.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_5.n_601.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_5.n_601.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_6.n_469.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_6.n_469.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_7.n_248.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_7.n_248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_8.n_211.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_8.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_9.n_117.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_9.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_0.n_5245.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_0.n_5245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_10.n_390.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_10.n_390.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_11.n_342.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_11.n_342.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_12.n_287.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_12.n_287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_13.n_274.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_13.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_14.n_151.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_14.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_15.n_129.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_15.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_16.n_72.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_16.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_17.n_53.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_17.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_18.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_19.n_34.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_19.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_1.n_4460.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_1.n_4460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_20.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_21.n_28.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_21.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_22.n_23.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_22.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_23.n_20.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_23.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_2.n_3417.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_2.n_3417.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_3.n_1978.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_3.n_1978.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_4.n_1231.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_4.n_1231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_5.n_529.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_5.n_529.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_6.n_523.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_6.n_523.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_7.n_484.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_7.n_484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_8.n_440.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_8.n_440.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_9.n_405.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_9.n_405.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_0.n_2477.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_0.n_2477.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_10.n_90.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_10.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_11.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_12.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_1.n_1989.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_1.n_1989.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_2.n_1832.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_2.n_1832.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_3.n_1504.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_3.n_1504.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_4.n_1296.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_4.n_1296.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_5.n_964.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_5.n_964.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_6.n_705.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_6.n_705.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_7.n_328.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_7.n_328.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_8.n_162.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_8.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_0.n_1282.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_0.n_1282.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_1.n_1150.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_1.n_1150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_2.n_284.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_2.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_3.n_96.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_3.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_4.n_84.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_4.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_6.n_73.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_6.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_7.n_48.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_7.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_8.n_37.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_8.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_0.n_237.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_0.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_11.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_12.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_13.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_1.n_221.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_1.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_2.n_212.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_2.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_3.n_198.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_3.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_4.n_195.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_4.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_5.n_175.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_5.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_6.n_76.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_6.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_7.n_62.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_7.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_8.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_9.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_0.n_505.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_0.n_505.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_1.n_244.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_1.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_2.n_113.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_2.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_3.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_4.n_75.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_4.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_5.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_6.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_0.n_676.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_0.n_676.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_10.n_55.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_10.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_11.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_12.n_47.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_12.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_13.n_36.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_13.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_1.n_485.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_1.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_2.n_149.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_2.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_3.n_141.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_3.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_4.n_107.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_4.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_7.n_73.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_7.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_8.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_9.n_56.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_9.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_0.n_539.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_0.n_539.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_1.n_400.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_1.n_400.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_2.n_293.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_2.n_293.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_3.n_229.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_3.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_4.n_165.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_4.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_5.n_52.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_5.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_0.n_13898.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_0.n_13898.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_11.n_48.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_11.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_12.n_46.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_12.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_13.n_43.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_13.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_14.n_32.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_14.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_16.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_1.n_7267.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_1.n_7267.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_2.n_600.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_2.n_600.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_3.n_384.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_3.n_384.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_4.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_5.n_170.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_5.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_6.n_104.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_6.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_7.n_94.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_7.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_8.n_81.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_8.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_9.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_0.n_12692.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_0.n_12692.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_10.n_178.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_10.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_11.n_149.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_11.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_12.n_147.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_12.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_13.n_129.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_13.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_14.n_122.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_14.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_15.n_119.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_15.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_16.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_17.n_111.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_17.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_18.n_95.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_18.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_19.n_91.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_19.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_1.n_1198.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_1.n_1198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_20.n_71.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_20.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_21.n_69.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_21.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_22.n_61.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_22.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_23.n_56.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_23.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_24.n_49.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_24.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_25.n_31.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_25.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_26.n_20.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_26.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_2.n_725.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_2.n_725.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_3.n_439.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_3.n_439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_4.n_392.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_4.n_392.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_5.n_342.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_5.n_342.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_6.n_230.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_6.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_7.n_210.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_7.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_8.n_207.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_8.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_9.n_182.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_9.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_0.n_1690.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_0.n_1690.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_10.n_173.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_10.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_11.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_12.n_87.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_12.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_13.n_74.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_13.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_14.n_66.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_14.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_15.n_57.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_15.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_16.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_17.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_18.n_26.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_18.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_1.n_1249.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_1.n_1249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_2.n_731.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_2.n_731.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_3.n_621.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_3.n_621.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_4.n_574.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_4.n_574.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_5.n_403.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_5.n_403.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_6.n_306.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_6.n_306.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_7.n_275.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_7.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_8.n_224.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_8.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_9.n_214.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_9.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_0.n_4358.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_0.n_4358.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_10.n_454.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_10.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_11.n_303.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_11.n_303.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_12.n_288.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_12.n_288.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_13.n_260.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_13.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_14.n_258.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_14.n_258.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_15.n_256.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_15.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_16.n_250.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_16.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_17.n_209.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_17.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_18.n_172.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_18.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_19.n_129.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_19.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_1.n_3883.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_1.n_3883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_20.n_102.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_20.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_21.n_89.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_21.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_22.n_75.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_22.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_23.n_67.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_23.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_24.n_65.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_24.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_25.n_42.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_25.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_26.n_35.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_26.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_27.n_29.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_27.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_28.n_22.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_28.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_2.n_824.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_2.n_824.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_3.n_708.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_3.n_708.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_4.n_675.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_4.n_675.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_5.n_609.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_5.n_609.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_6.n_505.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_6.n_505.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_7.n_480.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_7.n_480.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_8.n_478.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_8.n_478.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_9.n_467.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_9.n_467.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_0.n_601.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_0.n_601.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_10.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_1.n_582.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_1.n_582.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_2.n_310.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_2.n_310.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_4.n_108.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_4.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_5.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_6.n_96.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_6.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_7.n_61.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_7.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_8.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_9.n_55.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_9.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_0.n_177.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_0.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_1.n_79.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_1.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_2.n_49.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_2.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_3.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_4.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_5.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_6.n_34.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_6.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_7.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_8.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_0.n_517.CWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_0.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_1.n_361.CWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_1.n_361.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_2.n_340.CWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_2.n_340.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_3.n_68.CWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_3.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_4.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_0.n_2820.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_0.n_2820.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_10.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_11.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_12.n_27.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_12.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_13.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_14.n_24.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_14.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_15.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_1.n_1485.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_1.n_1485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_2.n_698.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_2.n_698.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_3.n_346.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_3.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_4.n_282.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_4.n_282.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_5.n_123.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_5.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_6.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_7.n_76.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_7.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_8.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_9.n_68.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_9.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_10.n_111.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_10.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_11.n_107.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_11.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_12.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_13.n_83.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_13.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_14.n_50.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_14.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_15.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_16.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_1.n_2649.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_1.n_2649.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_2.n_276.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_2.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_3.n_255.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_3.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_4.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_5.n_200.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_5.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_6.n_195.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_6.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_7.n_168.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_7.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_8.n_158.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_8.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_9.n_128.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_9.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_0.n_2486.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_0.n_2486.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_1.n_246.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_1.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_2.n_166.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_2.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_3.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_4.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_0.n_2820.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_0.n_2820.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_10.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_11.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_12.n_27.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_12.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_13.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_14.n_24.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_14.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_15.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_1.n_1485.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_1.n_1485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_2.n_698.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_2.n_698.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_3.n_346.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_3.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_4.n_282.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_4.n_282.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_5.n_123.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_5.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_6.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_7.n_76.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_7.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_8.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_9.n_68.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_9.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_10.n_111.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_10.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_11.n_107.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_11.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_12.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_13.n_83.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_13.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_14.n_50.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_14.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_15.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_16.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_1.n_2649.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_1.n_2649.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_2.n_276.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_2.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_3.n_255.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_3.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_4.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_5.n_200.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_5.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_6.n_195.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_6.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_7.n_168.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_7.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_8.n_158.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_8.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_9.n_128.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_9.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_0.n_2486.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_0.n_2486.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_1.n_246.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_1.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_2.n_166.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_2.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_3.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_4.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_0.n_1608.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_0.n_1608.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_10.n_150.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_10.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_11.n_124.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_11.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_12.n_117.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_12.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_13.n_108.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_13.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_14.n_94.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_14.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_15.n_78.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_15.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_16.n_78.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_16.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_17.n_75.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_17.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_18.n_58.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_18.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_19.n_53.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_19.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_1.n_548.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_1.n_548.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_20.n_49.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_20.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_21.n_49.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_21.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_22.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_23.n_27.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_23.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_24.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_25.n_23.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_25.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_2.n_526.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_2.n_526.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_3.n_391.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_3.n_391.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_4.n_383.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_4.n_383.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_5.n_305.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_5.n_305.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_6.n_278.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_6.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_7.n_200.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_7.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_8.n_174.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_8.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_9.n_154.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_9.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_0.n_1205.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_0.n_1205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_10.n_156.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_10.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_11.n_129.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_11.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_12.n_71.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_12.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_13.n_64.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_13.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_14.n_59.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_14.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_15.n_55.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_15.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_16.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_17.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_18.n_25.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_18.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_1.n_1021.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_1.n_1021.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_2.n_901.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_2.n_901.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_3.n_560.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_3.n_560.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_4.n_336.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_4.n_336.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_5.n_289.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_5.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_6.n_279.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_6.n_279.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_7.n_265.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_7.n_265.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_8.n_242.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_8.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_9.n_168.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_9.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_0.n_966.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_0.n_966.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_1.n_540.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_1.n_540.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_2.n_73.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_2.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_0.n_1746.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_0.n_1746.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_10.n_83.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_10.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_11.n_79.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_11.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_12.n_78.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_12.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_13.n_73.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_13.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_14.n_49.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_14.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_15.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_16.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_17.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_1.n_1243.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_1.n_1243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_2.n_907.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_2.n_907.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_3.n_452.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_3.n_452.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_4.n_292.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_4.n_292.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_5.n_282.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_5.n_282.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_7.n_149.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_7.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_8.n_116.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_8.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_9.n_95.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_9.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_0.n_1792.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_0.n_1792.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_1.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_2.n_104.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_2.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_3.n_102.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_3.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_4.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_5.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_6.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_7.n_26.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_7.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_8.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_10.n_439.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_10.n_439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_11.n_367.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_11.n_367.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_12.n_356.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_12.n_356.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_13.n_313.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_13.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_14.n_251.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_14.n_251.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_15.n_236.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_15.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_16.n_225.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_16.n_225.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_17.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_18.n_40.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_18.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_19.n_39.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_19.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_1.n_3844.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_1.n_3844.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_20.n_28.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_20.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_2.n_3280.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_2.n_3280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_3.n_2131.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_3.n_2131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_4.n_1517.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_4.n_1517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_5.n_1199.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_5.n_1199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_6.n_1014.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_6.n_1014.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_7.n_624.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_7.n_624.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_8.n_571.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_8.n_571.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_9.n_516.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_9.n_516.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_0.n_541.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_0.n_541.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_10.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_11.n_34.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_11.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_12.n_28.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_12.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_13.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_1.n_146.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_1.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_2.n_125.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_2.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_3.n_111.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_3.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_4.n_109.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_4.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_5.n_102.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_5.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_6.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_7.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_8.n_53.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_8.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_9.n_50.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_9.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_0.n_1349.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_0.n_1349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_1.n_1134.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_1.n_1134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_2.n_1030.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_2.n_1030.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_3.n_904.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_3.n_904.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_4.n_453.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_4.n_453.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_5.n_388.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_5.n_388.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_6.n_203.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_6.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_7.n_143.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_7.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_9.n_70.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_9.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_0.n_666.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_0.n_666.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_10.n_103.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_10.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_12.n_101.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_12.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_13.n_95.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_13.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_14.n_92.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_14.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_15.n_77.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_15.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_16.n_76.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_16.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_17.n_74.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_17.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_18.n_59.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_18.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_19.n_55.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_19.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_1.n_380.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_1.n_380.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_20.n_39.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_20.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_21.n_35.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_21.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_2.n_375.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_2.n_375.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_3.n_266.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_3.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_4.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_5.n_176.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_5.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_6.n_139.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_6.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_7.n_121.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_7.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_8.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_0.n_3391.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_0.n_3391.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_10.n_100.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_10.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_11.n_82.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_11.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_12.n_62.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_12.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_13.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_1.n_1435.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_1.n_1435.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_2.n_1066.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_2.n_1066.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_3.n_1043.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_3.n_1043.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_4.n_515.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_4.n_515.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_5.n_498.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_5.n_498.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_6.n_441.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_6.n_441.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_7.n_386.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_7.n_386.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_8.n_363.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_8.n_363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_9.n_307.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_9.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_0.n_829.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_0.n_829.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_10.n_84.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_10.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_11.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_12.n_46.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_12.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_13.n_40.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_13.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_14.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_1.n_281.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_1.n_281.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_2.n_185.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_2.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_3.n_171.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_3.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_5.n_125.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_5.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_6.n_110.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_6.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_7.n_110.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_7.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_8.n_99.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_8.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_9.n_93.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_9.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_0.n_895.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_0.n_895.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_10.n_162.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_10.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_11.n_156.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_11.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_12.n_143.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_12.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_13.n_141.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_13.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_14.n_139.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_14.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_15.n_132.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_15.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_16.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_17.n_108.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_17.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_18.n_104.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_18.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_19.n_104.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_19.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_1.n_666.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_1.n_666.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_20.n_102.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_20.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_21.n_98.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_21.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_22.n_97.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_22.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_23.n_87.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_23.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_24.n_66.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_24.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_25.n_62.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_25.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_26.n_54.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_26.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_27.n_23.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_27.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_2.n_481.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_2.n_481.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_3.n_304.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_3.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_4.n_256.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_4.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_5.n_205.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_5.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_6.n_190.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_6.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_7.n_174.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_7.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_8.n_172.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_8.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_9.n_163.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_9.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_0.n_2769.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_0.n_2769.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_10.n_78.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_10.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_13.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_1.n_2285.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_1.n_2285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_2.n_1638.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_2.n_1638.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_3.n_1332.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_3.n_1332.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_4.n_877.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_4.n_877.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_5.n_647.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_5.n_647.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_6.n_407.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_6.n_407.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_7.n_400.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_7.n_400.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_8.n_222.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_8.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_9.n_145.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_9.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_0.n_2769.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_0.n_2769.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_10.n_78.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_10.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_13.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_1.n_2285.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_1.n_2285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_2.n_1638.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_2.n_1638.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_3.n_1332.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_3.n_1332.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_4.n_877.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_4.n_877.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_5.n_647.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_5.n_647.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_6.n_407.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_6.n_407.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_7.n_400.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_7.n_400.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_8.n_222.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_8.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_9.n_145.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_9.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_0.n_2622.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_0.n_2622.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_10.n_80.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_10.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_11.n_49.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_11.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_12.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_1.n_1059.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_1.n_1059.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_2.n_944.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_2.n_944.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_3.n_764.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_3.n_764.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_4.n_745.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_4.n_745.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_5.n_517.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_5.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_6.n_385.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_6.n_385.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_7.n_349.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_7.n_349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_8.n_300.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_8.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_9.n_182.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_9.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_0.n_5720.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_0.n_5720.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_1.n_541.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_1.n_541.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_2.n_263.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_2.n_263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_3.n_263.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_3.n_263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_4.n_183.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_4.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_5.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_5.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_6.n_82.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_6.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_7.n_62.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_7.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_8.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_8.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_9.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_0.n_4803.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_0.n_4803.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_10.n_194.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_10.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_11.n_183.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_11.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_12.n_124.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_12.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_13.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_13.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_14.n_79.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_14.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_15.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_15.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_16.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_16.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_17.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_18.n_30.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_2.n_685.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_2.n_685.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_3.n_639.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_3.n_639.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_4.n_488.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_4.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_5.n_367.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_5.n_367.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_6.n_359.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_6.n_359.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_7.n_354.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_7.n_354.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_8.n_340.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_8.n_340.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_9.n_210.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_9.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_0.n_8550.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_0.n_8550.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_10.n_711.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_10.n_711.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_11.n_693.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_11.n_693.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_12.n_548.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_12.n_548.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_13.n_538.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_13.n_538.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_14.n_467.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_14.n_467.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_15.n_461.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_15.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_16.n_443.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_16.n_443.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_17.n_338.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_17.n_338.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_18.n_244.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_18.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_19.n_227.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_19.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_1.n_3973.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_1.n_3973.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_20.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_20.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_21.n_177.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_21.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_22.n_168.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_22.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_23.n_126.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_23.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_24.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_24.n_80.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_26.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_26.n_25.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_2.n_3245.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_2.n_3245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_3.n_2977.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_3.n_2977.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_4.n_2063.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_4.n_2063.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_5.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_5.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_6.n_1756.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_6.n_1756.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_7.n_1555.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_7.n_1555.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_8.n_1491.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_8.n_1491.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_9.n_997.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_9.n_997.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_0.n_1482.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_0.n_1482.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_10.n_150.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_10.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_11.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_12.n_141.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_12.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_13.n_100.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_13.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_14.n_91.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_14.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_15.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_15.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_16.n_43.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_16.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_18.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_18.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_19.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_1.n_1093.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_1.n_1093.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_20.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_20.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_21.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_22.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_22.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_2.n_1054.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_2.n_1054.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_3.n_991.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_3.n_991.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_4.n_358.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_4.n_358.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_5.n_279.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_5.n_279.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_6.n_257.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_6.n_257.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_7.n_249.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_7.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_8.n_232.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_8.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_9.n_218.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_9.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_0.n_5181.CWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_0.n_5181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_1.n_625.CWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_1.n_625.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_2.n_297.CWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_2.n_297.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_3.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_3.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_4.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_5.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_6.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_7.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_0.n_2978.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_0.n_2978.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_10.n_40.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_10.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_1.n_2214.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_1.n_2214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_2.n_1312.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_2.n_1312.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_3.n_468.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_3.n_468.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_4.n_349.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_4.n_349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_5.n_280.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_5.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_6.n_254.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_6.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_7.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_8.n_89.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_8.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_9.n_64.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_9.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_10.n_103.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_10.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_11.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_12.n_75.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_12.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_13.n_67.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_13.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_14.n_59.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_14.n_59.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_16.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_17.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_18.n_22.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_18.n_22.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_1.n_6835.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_1.n_6835.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_2.n_1140.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_2.n_1140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_3.n_708.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_3.n_708.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_4.n_571.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_4.n_571.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_5.n_525.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_5.n_525.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_6.n_321.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_10.n_103.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_10.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_11.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_12.n_75.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_12.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_13.n_67.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_13.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_14.n_59.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_14.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_15.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_16.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_17.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_18.n_22.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_18.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_19.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_1.n_6835.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_1.n_6835.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_2.n_1140.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_2.n_1140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_3.n_708.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_3.n_708.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_4.n_571.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_4.n_571.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_5.n_525.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_5.n_525.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_6.n_321.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_7.n_146.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_7.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_8.n_132.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_8.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_9.n_110.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_9.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_0.n_1096.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_0.n_1096.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_10.n_59.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_10.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_12.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_13.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_14.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_1.n_199.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_1.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_2.n_172.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_2.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_3.n_141.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_3.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_4.n_120.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_4.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_5.n_112.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_5.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_6.n_90.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_6.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_7.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_8.n_77.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_8.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_9.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF347-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_0.n_533.CWM.meme motif-alignments-all-vs-all/ZNF347/ZNF347-201-vs-ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_0.n_533.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF347-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all/ZNF347/ZNF347-201-vs-ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_1.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF347-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF347/ZNF347-201-vs-ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_0.n_2405.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_0.n_2405.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_10.n_266.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_10.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_11.n_210.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_11.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_12.n_189.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_12.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_13.n_183.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_13.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_14.n_178.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_14.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_15.n_159.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_15.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_16.n_152.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_16.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_17.n_131.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_17.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_18.n_106.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_18.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_19.n_80.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_19.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_1.n_2017.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_1.n_2017.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_20.n_71.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_20.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_21.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_2.n_1796.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_2.n_1796.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_3.n_1151.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_3.n_1151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_4.n_837.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_4.n_837.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_5.n_513.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_5.n_513.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_6.n_462.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_6.n_462.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_7.n_394.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_7.n_394.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_8.n_389.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_8.n_389.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_9.n_383.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_9.n_383.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_0.n_3643.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_0.n_3643.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_1.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_2.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_3.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_0.n_124.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_0.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_10.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_11.n_21.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_11.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_12.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_1.n_121.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_1.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_2.n_114.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_2.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_3.n_96.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_3.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_4.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_6.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_7.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_8.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_9.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_0.n_549.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_0.n_549.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_10.n_275.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_10.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_11.n_274.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_11.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_12.n_255.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_12.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_13.n_252.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_13.n_252.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_14.n_247.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_14.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_15.n_239.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_15.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_16.n_225.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_16.n_225.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_17.n_208.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_17.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_18.n_202.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_18.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_19.n_189.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_19.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_1.n_442.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_1.n_442.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_20.n_129.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_20.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_21.n_122.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_21.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_22.n_119.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_22.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_23.n_91.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_23.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_24.n_87.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_24.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_25.n_84.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_25.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_26.n_73.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_26.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_27.n_71.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_27.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_28.n_56.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_28.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_29.n_53.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_29.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_2.n_403.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_2.n_403.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_30.n_53.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_30.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_31.n_49.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_31.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_32.n_26.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_32.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_3.n_382.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_3.n_382.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_4.n_377.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_4.n_377.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_5.n_331.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_5.n_331.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_6.n_322.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_6.n_322.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_7.n_313.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_7.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_8.n_298.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_8.n_298.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_9.n_281.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_9.n_281.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_0.n_1877.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_0.n_1877.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_10.n_135.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_10.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_11.n_124.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_11.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_12.n_123.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_12.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_13.n_118.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_13.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_14.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_15.n_110.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_15.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_16.n_76.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_16.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_17.n_73.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_17.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_18.n_71.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_18.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_19.n_67.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_19.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_1.n_1563.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_1.n_1563.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_20.n_65.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_20.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_21.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_22.n_46.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_22.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_23.n_39.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_23.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_24.n_35.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_24.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_25.n_22.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_25.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_26.n_20.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_26.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_2.n_1261.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_2.n_1261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_3.n_645.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_3.n_645.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_4.n_405.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_4.n_405.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_5.n_360.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_5.n_360.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_6.n_277.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_6.n_277.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_7.n_222.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_7.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_8.n_191.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_8.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_9.n_151.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_9.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_10.n_103.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_10.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_11.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_12.n_67.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_12.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_13.n_63.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_13.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_14.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_1.n_1237.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_1.n_1237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_2.n_764.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_2.n_764.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_3.n_365.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_3.n_365.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_4.n_348.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_4.n_348.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_5.n_286.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_5.n_286.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_6.n_224.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_6.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_7.n_133.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_7.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_8.n_124.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_8.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_9.n_116.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_9.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_10.n_103.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_10.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_11.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_12.n_67.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_12.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_13.n_63.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_13.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_14.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_1.n_1237.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_1.n_1237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_2.n_764.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_2.n_764.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_3.n_365.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_3.n_365.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_4.n_348.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_4.n_348.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_5.n_286.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_5.n_286.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_6.n_224.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_6.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_7.n_133.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_7.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_8.n_124.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_8.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_9.n_116.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_9.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_0.n_1408.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_0.n_1408.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_4.n_494.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_4.n_494.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_12.n_60.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_12.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_1.n_604.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_1.n_604.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_2.n_420.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_2.n_420.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_3.n_412.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_3.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_4.n_409.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_4.n_409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_5.n_348.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_5.n_348.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_6.n_304.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_6.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_7.n_256.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_7.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_8.n_184.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_8.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_9.n_157.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_9.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_0.n_1141.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_0.n_1141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_10.n_95.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_10.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_11.n_93.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_11.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_12.n_69.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_12.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_13.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_14.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_1.n_1090.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_1.n_1090.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_2.n_999.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_2.n_999.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_3.n_711.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_3.n_711.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_4.n_551.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_4.n_551.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_5.n_540.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_5.n_540.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_6.n_423.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_6.n_423.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_7.n_365.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_7.n_365.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_8.n_227.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_8.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_9.n_114.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_9.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_10.n_116.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_10.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_11.n_106.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_11.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_12.n_105.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_12.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_13.n_77.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_13.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_14.n_72.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_14.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_15.n_68.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_15.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_16.n_66.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_16.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_17.n_65.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_17.n_65.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_19.n_56.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_19.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_1.n_454.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_1.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_20.n_49.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_20.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_21.n_47.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_21.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_22.n_46.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_22.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_23.n_43.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_23.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_24.n_41.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_24.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_25.n_41.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_25.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_26.n_41.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_26.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_27.n_32.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_27.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_2.n_270.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_2.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_3.n_259.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_3.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_4.n_247.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_4.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_5.n_246.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_5.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_6.n_218.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_6.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_7.n_189.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_7.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_8.n_157.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_8.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_9.n_130.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_9.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_10.n_116.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_10.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_11.n_106.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_11.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_12.n_105.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_12.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_13.n_77.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_13.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_14.n_72.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_14.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_15.n_68.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_15.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_16.n_66.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_16.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_17.n_65.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_17.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_18.n_56.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_18.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_19.n_56.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_19.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_1.n_454.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_1.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_20.n_49.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_20.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_21.n_47.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_21.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_22.n_46.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_22.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_23.n_43.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_23.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_24.n_41.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_24.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_25.n_41.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_25.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_26.n_41.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_26.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_27.n_32.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_27.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_2.n_270.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_2.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_3.n_259.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_3.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_4.n_247.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_4.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_5.n_246.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_5.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_6.n_218.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_6.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_7.n_189.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_7.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_8.n_157.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_8.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_9.n_130.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_9.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_0.n_13953.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_0.n_13953.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_10.n_59.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_10.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_11.n_49.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_11.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_12.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_13.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_1.n_2096.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_1.n_2096.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_2.n_1363.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_2.n_1363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_3.n_1268.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_3.n_1268.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_4.n_1142.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_4.n_1142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_5.n_544.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_5.n_544.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_6.n_412.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_6.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_7.n_308.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_7.n_308.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_8.n_144.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_8.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_9.n_110.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_9.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_0.n_298.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_0.n_298.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_10.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_11.n_71.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_11.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_12.n_67.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_12.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_13.n_58.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_13.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_14.n_58.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_14.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_15.n_48.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_15.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_17.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_18.n_22.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_18.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_1.n_234.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_1.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_2.n_205.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_2.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_3.n_134.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_3.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_4.n_115.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_4.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_5.n_109.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_5.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_6.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_7.n_85.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_7.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_8.n_83.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_8.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_9.n_82.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_9.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_0.n_2392.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_0.n_2392.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_10.n_181.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_10.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_11.n_78.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_11.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_12.n_57.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_12.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_13.n_51.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_13.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_14.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_15.n_29.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_15.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_16.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_1.n_2283.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_1.n_2283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_2.n_1651.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_2.n_1651.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_3.n_1468.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_3.n_1468.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_4.n_1073.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_4.n_1073.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_5.n_834.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_5.n_834.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_6.n_815.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_6.n_815.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_7.n_697.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_7.n_697.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_8.n_578.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_8.n_578.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_9.n_294.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_9.n_294.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_0.n_1783.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_0.n_1783.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_10.n_109.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_10.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_11.n_71.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_11.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_12.n_58.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_12.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_13.n_53.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_13.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_14.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_15.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_16.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_1.n_704.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_1.n_704.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_6.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_7.n_183.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_7.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_8.n_152.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_8.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_9.n_125.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_9.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_0.n_232.CWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_0.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_1.n_187.CWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_1.n_187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_2.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_3.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_4.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_5.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_0.n_397.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_0.n_397.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_1.n_274.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_1.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_2.n_138.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_2.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_3.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_4.n_25.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_4.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_5.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_0.n_397.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_0.n_397.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_1.n_274.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_1.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_2.n_138.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_2.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_3.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_4.n_25.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_4.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_5.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_10.n_50.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_10.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_11.n_46.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_11.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_12.n_39.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_4.n_401.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_4.n_401.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_5.n_316.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_5.n_316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_6.n_273.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_6.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_7.n_271.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_7.n_271.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_8.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_10.n_348.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_10.n_348.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_11.n_314.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_11.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_12.n_300.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_12.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_13.n_220.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_13.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_14.n_219.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_14.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_15.n_215.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_15.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_16.n_215.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_16.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_17.n_189.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_17.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_18.n_184.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_18.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_19.n_132.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_19.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_1.n_2735.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_1.n_2735.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_20.n_83.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_20.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_21.n_79.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_21.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_22.n_78.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_22.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_23.n_51.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_23.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_24.n_43.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_24.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_25.n_29.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_25.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_26.n_28.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_26.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_27.n_28.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_27.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_28.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_28.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_2.n_1038.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_2.n_1038.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_3.n_512.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_3.n_512.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_4.n_461.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_4.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_5.n_435.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_5.n_435.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_6.n_424.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_6.n_424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_7.n_387.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_7.n_387.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_8.n_384.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_8.n_384.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_9.n_362.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_9.n_362.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_10.n_50.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_10.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_11.n_46.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_11.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_12.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_13.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_14.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_1.n_699.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_1.n_699.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_2.n_666.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_2.n_666.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_3.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_4.n_401.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_4.n_401.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_5.n_316.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_5.n_316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_6.n_273.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_6.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_7.n_271.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_7.n_271.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_8.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_10.n_348.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_10.n_348.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_11.n_314.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_11.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_12.n_300.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_12.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_13.n_220.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_13.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_14.n_219.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_14.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_15.n_215.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_15.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_16.n_215.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_16.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_17.n_189.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_17.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_18.n_184.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_18.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_19.n_132.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_19.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_1.n_2735.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_1.n_2735.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_20.n_83.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_20.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_21.n_79.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_21.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_22.n_78.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_22.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_23.n_51.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_23.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_24.n_43.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_24.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_25.n_29.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_25.n_29.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_27.n_28.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_27.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_28.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_28.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_2.n_1038.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_2.n_1038.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_3.n_512.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_3.n_512.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_4.n_461.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_4.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_5.n_435.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_5.n_435.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_6.n_424.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_6.n_424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_7.n_387.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_7.n_387.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_8.n_384.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_8.n_384.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_9.n_362.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_9.n_362.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_0.n_3381.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_0.n_3381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_10.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_11.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_12.n_72.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_12.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_13.n_71.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_13.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_14.n_69.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_14.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_15.n_58.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_15.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_17.n_31.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_17.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_18.n_24.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_18.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_1.n_1228.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_1.n_1228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_2.n_1160.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_2.n_1160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_3.n_853.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_3.n_853.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_4.n_780.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_4.n_780.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_5.n_342.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_5.n_342.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_6.n_291.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_6.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_7.n_253.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_7.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_8.n_99.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_8.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_9.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_0.n_6342.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_0.n_6342.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_10.n_93.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_10.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_11.n_81.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_11.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_12.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_13.n_37.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_13.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_1.n_656.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_1.n_656.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_4.n_278.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_4.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_5.n_268.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_5.n_268.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_6.n_222.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_6.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_7.n_135.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_7.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_8.n_115.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_8.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_9.n_108.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_9.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_0.n_2375.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_0.n_2375.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_10.n_152.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_10.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_11.n_141.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_11.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_12.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_13.n_67.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_13.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_14.n_54.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_14.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_16.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_17.n_35.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_17.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_18.n_28.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_18.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_19.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_1.n_489.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_1.n_489.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_20.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_2.n_467.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_2.n_467.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_3.n_459.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_3.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_4.n_442.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_4.n_442.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_5.n_437.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_5.n_437.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_6.n_321.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_7.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_8.n_173.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_8.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_9.n_159.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_9.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_0.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_10.n_64.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_10.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_11.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_12.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_13.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_14.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_15.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_16.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_17.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_1.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_2.n_165.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_2.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_3.n_144.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_3.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_4.n_136.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_4.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_5.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_6.n_118.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_6.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_7.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_8.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_9.n_84.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_9.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_10.n_33.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_10.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_11.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_12.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_13.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_14.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_1.n_122.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_1.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_2.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_3.n_82.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_3.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_4.n_69.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_4.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_6.n_60.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_6.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_7.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_8.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_9.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_0.n_2375.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_0.n_2375.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_10.n_152.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_10.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_11.n_141.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_11.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_12.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_13.n_67.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_13.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_14.n_54.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_14.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_16.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_17.n_35.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_17.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_18.n_28.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_18.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_19.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_1.n_489.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_1.n_489.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_20.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_2.n_467.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_2.n_467.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_3.n_459.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_3.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_4.n_442.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_4.n_442.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_5.n_437.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_5.n_437.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_6.n_321.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_7.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_8.n_173.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_8.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_9.n_159.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_9.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_0.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_10.n_64.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_10.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_11.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_12.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_13.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_14.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_15.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_16.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_17.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_1.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_2.n_165.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_2.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_3.n_144.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_3.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_4.n_136.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_4.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_5.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_6.n_118.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_6.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_7.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_8.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_9.n_84.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_9.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_10.n_33.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_10.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_11.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_12.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_13.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_14.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_1.n_122.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_1.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_2.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_3.n_82.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_3.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_4.n_69.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_4.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_6.n_60.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_6.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_7.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_8.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_9.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_0.n_8425.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_0.n_8425.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_1.n_978.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_1.n_978.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_2.n_523.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_2.n_523.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_3.n_317.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_3.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_4.n_251.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_4.n_251.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_5.n_123.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_5.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_6.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_7.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_8.n_37.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_8.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_9.n_37.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_9.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_0.n_351.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_0.n_351.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_10.n_69.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_10.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_11.n_62.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_11.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_12.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_13.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_14.n_54.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_14.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_15.n_46.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_15.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_16.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_17.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_18.n_44.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_18.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_19.n_43.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_19.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_1.n_162.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_1.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_20.n_37.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_20.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_21.n_35.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_21.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_22.n_33.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_22.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_23.n_33.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_23.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_24.n_31.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_24.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_25.n_28.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_25.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_26.n_28.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_26.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_27.n_27.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_27.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_28.n_20.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_28.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_2.n_160.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_2.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_3.n_143.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_3.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_4.n_127.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_4.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_5.n_125.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_5.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_6.n_78.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_6.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_7.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_8.n_73.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_8.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_9.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_10.n_100.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_10.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_11.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_12.n_95.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_12.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_13.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_14.n_88.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_14.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_15.n_81.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_15.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_16.n_79.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_16.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_17.n_68.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_17.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_18.n_59.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_18.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_19.n_59.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_19.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_1.n_235.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_1.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_20.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_21.n_51.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_21.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_22.n_51.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_22.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_23.n_32.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_23.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_2.n_194.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_2.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_3.n_185.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_3.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_4.n_139.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_4.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_5.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_6.n_118.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_6.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_8.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_10.n_100.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_10.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_11.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_12.n_95.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_12.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_13.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_14.n_88.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_14.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_15.n_81.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_15.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_16.n_79.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_16.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_17.n_68.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_17.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_18.n_59.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_18.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_19.n_59.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_19.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_1.n_235.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_1.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_20.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_21.n_51.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_21.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_22.n_51.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_22.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_23.n_32.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_23.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_2.n_194.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_2.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_3.n_185.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_3.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_4.n_139.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_4.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_5.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_6.n_118.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_6.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_8.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_0.n_1391.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_0.n_1391.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_10.n_198.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_10.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_11.n_110.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_11.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_12.n_95.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_12.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_13.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_13.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_14.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_15.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_17.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_18.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_1.n_1210.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_1.n_1210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_2.n_609.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_2.n_609.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_3.n_374.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_3.n_374.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_4.n_347.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_4.n_347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_5.n_336.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_5.n_336.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_6.n_308.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_6.n_308.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_7.n_283.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_7.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_8.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_8.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_9.n_203.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_9.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_0.n_2746.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_0.n_2746.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_1.n_2101.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_1.n_2101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_2.n_720.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_2.n_720.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_3.n_687.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_3.n_687.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_4.n_257.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_4.n_257.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_5.n_143.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_5.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_6.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_7.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_8.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_0.n_3604.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_0.n_3604.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_10.n_238.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_10.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_11.n_238.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_11.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_12.n_185.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_12.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_13.n_174.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_13.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_14.n_167.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_14.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_15.n_145.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_15.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_16.n_134.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_16.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_17.n_111.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_17.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_18.n_101.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_18.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_19.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_19.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_1.n_2631.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_1.n_2631.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_20.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_20.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_21.n_44.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_21.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_22.n_33.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_22.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_23.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_24.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_25.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_25.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_2.n_1127.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_2.n_1127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_3.n_837.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_3.n_837.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_4.n_694.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_4.n_694.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_5.n_410.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_5.n_410.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_6.n_357.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_6.n_357.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_7.n_348.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_7.n_348.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_8.n_315.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_8.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_9.n_260.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_9.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_0.n_12413.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_0.n_12413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_10.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_11.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_12.n_33.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_12.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_13.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_1.n_588.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_1.n_588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_2.n_415.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_2.n_415.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_3.n_280.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_3.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_4.n_253.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_4.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_5.n_148.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_5.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_6.n_141.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_6.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_7.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_7.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_8.n_112.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_8.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_9.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_9.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_0.n_749.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_0.n_749.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_10.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_10.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_11.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_11.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_1.n_199.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_1.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_2.n_157.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_2.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_3.n_96.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_3.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_4.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_5.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_6.n_71.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_6.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_7.n_65.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_7.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_8.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_9.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_9.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_0.n_1088.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_0.n_1088.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_10.n_71.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_10.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_11.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_11.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_12.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_12.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_13.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_14.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_1.n_495.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_1.n_495.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_2.n_429.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_2.n_429.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_3.n_209.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_3.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_4.n_202.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_4.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_5.n_143.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_5.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_6.n_110.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_6.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_7.n_101.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_7.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_8.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_9.n_90.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_9.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_0.n_706.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_0.n_706.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_10.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_10.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_11.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_12.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_1.n_271.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_1.n_271.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_2.n_156.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_2.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_3.n_118.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_3.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_4.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_4.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_5.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_5.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_6.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_6.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_7.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_8.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_9.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_9.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_0.n_3265.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_0.n_3265.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_10.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_10.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_12.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_12.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_13.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_14.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_1.n_1861.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_1.n_1861.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_2.n_1696.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_2.n_1696.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_3.n_517.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_3.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_4.n_317.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_4.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_5.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_6.n_205.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_6.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_7.n_187.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_7.n_187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_8.n_145.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_8.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_9.n_144.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_9.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_0.n_2870.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_0.n_2870.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_10.n_74.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_12.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_12.n_61.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_1.n_1099.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_1.n_1099.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_2.n_715.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_2.n_715.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_3.n_488.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_3.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_4.n_218.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_4.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_5.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_5.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_6.n_133.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_6.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_7.n_122.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_7.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_8.n_115.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_8.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_9.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_0.n_1764.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_0.n_1764.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_1.n_343.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_1.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_2.n_191.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_2.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_3.n_176.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_3.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_4.n_171.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_4.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_5.n_151.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_5.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_6.n_141.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_6.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_7.n_104.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_7.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_8.n_89.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_8.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_0.n_236.CWM.meme motif-alignments-all-vs-all/ZNF155/ZNF155-201-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_0.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_1.n_198.CWM.meme motif-alignments-all-vs-all/ZNF155/ZNF155-201-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_1.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZNF155/ZNF155-201-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_2.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF155/ZNF155-201-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_0.n_6934.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_0.n_6934.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_10.n_77.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_10.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_11.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_12.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_13.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_1.n_5952.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_1.n_5952.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_2.n_2356.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_2.n_2356.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_3.n_1819.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_3.n_1819.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_4.n_441.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_4.n_441.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_5.n_434.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_5.n_434.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_6.n_315.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_6.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_7.n_252.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_7.n_252.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_8.n_222.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_8.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_9.n_215.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_9.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_0.n_592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_10.n_185.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_10.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_11.n_158.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_11.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_12.n_145.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_12.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_13.n_145.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_13.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_14.n_140.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_14.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_15.n_109.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_15.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_16.n_98.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_16.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_17.n_97.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_17.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_18.n_81.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_18.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_19.n_42.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_19.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_1.n_496.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_1.n_496.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_20.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_21.n_26.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_21.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_2.n_462.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_2.n_462.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_3.n_395.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_3.n_395.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_4.n_316.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_4.n_316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_5.n_309.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_5.n_309.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_6.n_304.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_6.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_7.n_280.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_7.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_8.n_246.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_8.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_9.n_204.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_9.n_204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_1.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_2.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_3.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_1.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_2.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_3.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_0.n_546.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_0.n_546.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_1.n_532.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_1.n_532.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_2.n_370.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_2.n_370.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_3.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_4.n_68.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_4.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_5.n_54.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_5.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_6.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_7.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_8.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_0.n_2732.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_0.n_2732.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_10.n_428.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_10.n_428.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_11.n_252.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_11.n_252.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_12.n_232.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_12.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_13.n_173.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_13.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_14.n_111.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_14.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_15.n_99.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_15.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_16.n_58.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_16.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_17.n_38.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_17.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_18.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_1.n_2626.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_1.n_2626.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_2.n_1959.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_2.n_1959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_3.n_1548.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_3.n_1548.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_4.n_1443.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_4.n_1443.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_5.n_962.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_5.n_962.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_6.n_852.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_6.n_852.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_7.n_547.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_7.n_547.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_8.n_488.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_8.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_9.n_446.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_9.n_446.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_0.n_269.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_0.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_1.n_119.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_1.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_2.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_3.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_4.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_6.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_7.n_47.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_7.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_8.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_10.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_11.n_62.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_11.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_12.n_38.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_12.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_1.n_3488.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_1.n_3488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_2.n_462.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_2.n_462.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_3.n_384.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_3.n_384.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_4.n_376.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_4.n_376.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_5.n_181.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_5.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_6.n_159.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_6.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_7.n_159.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_7.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_8.n_117.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_8.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_9.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_10.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_11.n_62.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_11.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_12.n_38.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_12.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_1.n_3488.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_1.n_3488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_2.n_462.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_2.n_462.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_3.n_384.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_3.n_384.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_4.n_376.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_4.n_376.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_5.n_181.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_5.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_6.n_159.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_6.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_7.n_159.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_7.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_8.n_117.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_8.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_9.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_0.n_2097.CWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_0.n_2097.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_10.n_93.CWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_10.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_1.n_402.CWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_1.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_2.n_256.CWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_2.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_3.n_240.CWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_3.n_240.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_0.n_2133.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_0.n_2133.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_9.n_360.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_9.n_360.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_0.n_8526.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_0.n_8526.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_10.n_91.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_10.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_11.n_90.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_11.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_12.n_61.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_12.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_13.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_14.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_15.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_16.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_1.n_2097.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_1.n_2097.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_2.n_885.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_2.n_885.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_3.n_500.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_3.n_500.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_4.n_484.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_4.n_484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_5.n_446.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_5.n_446.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_6.n_417.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_6.n_417.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_7.n_292.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_7.n_292.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_8.n_232.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_8.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_9.n_178.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_9.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_0.n_14335.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_0.n_14335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_10.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_11.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_12.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_13.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_14.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_15.n_43.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_15.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_16.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_17.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_1.n_2220.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_1.n_2220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_2.n_1363.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_2.n_1363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_3.n_661.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_3.n_661.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_4.n_643.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_4.n_643.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_12.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_1.n_225.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_1.n_225.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_2.n_158.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_2.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_3.n_156.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_3.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_4.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_4.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_5.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_5.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_6.n_73.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_6.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_8.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_8.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_9.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_10.n_492.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_10.n_492.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_11.n_282.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_11.n_282.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_12.n_277.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_12.n_277.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_13.n_228.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_13.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_14.n_218.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_14.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_15.n_208.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_15.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_16.n_156.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_16.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_17.n_105.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_17.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_18.n_85.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_18.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_19.n_70.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_19.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_1.n_3272.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_1.n_3272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_20.n_69.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_20.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_21.n_63.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_21.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_22.n_56.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_22.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_23.n_50.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_23.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_24.n_41.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_24.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_25.n_30.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_25.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_26.n_22.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_26.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_2.n_2348.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_2.n_2348.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_3.n_2007.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_3.n_2007.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_4.n_1633.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_4.n_1633.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_5.n_1203.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_5.n_1203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_6.n_1197.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_6.n_1197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_7.n_931.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_7.n_931.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_8.n_831.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_8.n_831.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_9.n_644.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_9.n_644.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_10.n_492.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_10.n_492.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_11.n_282.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_11.n_282.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_12.n_277.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_12.n_277.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_13.n_228.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_13.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_14.n_218.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_14.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_15.n_208.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_15.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_16.n_156.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_16.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_17.n_105.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_17.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_18.n_85.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_18.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_19.n_70.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_19.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_1.n_3272.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_1.n_3272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_20.n_69.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_20.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_21.n_63.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_21.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_22.n_56.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_22.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_23.n_50.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_23.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_24.n_41.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_24.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_25.n_30.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_25.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_26.n_22.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_26.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_2.n_2348.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_2.n_2348.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_3.n_2007.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_3.n_2007.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_4.n_1633.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_4.n_1633.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_5.n_1203.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_5.n_1203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_6.n_1197.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_6.n_1197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_7.n_931.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_7.n_931.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_8.n_831.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_8.n_831.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_9.n_644.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_9.n_644.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_0.n_54.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_0.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_1.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_2.n_39.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_2.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_3.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_5.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_7.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_0.n_1246.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_0.n_1246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_1.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_2.n_56.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_2.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_0.n_8249.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_0.n_8249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_10.n_44.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_10.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_1.n_386.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_1.n_386.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_2.n_266.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_2.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_3.n_230.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_3.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_4.n_221.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_4.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_5.n_126.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_5.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_6.n_72.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_6.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_7.n_62.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_7.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_8.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_9.n_48.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_9.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_0.n_502.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_0.n_502.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_10.n_141.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_10.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_11.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_12.n_126.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_12.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_13.n_123.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_13.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_14.n_117.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_14.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_15.n_115.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_15.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_16.n_95.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_16.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_17.n_95.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_17.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_18.n_94.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_18.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_19.n_74.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_19.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_1.n_435.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_1.n_435.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_20.n_66.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_20.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_21.n_55.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_21.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_22.n_54.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_22.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_23.n_53.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_23.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_24.n_51.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_24.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_2.n_381.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_2.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_3.n_350.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_3.n_350.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_4.n_330.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_4.n_330.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_5.n_295.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_5.n_295.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_6.n_294.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_6.n_294.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_7.n_266.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_7.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_8.n_225.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_8.n_225.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_9.n_171.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_9.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_0.n_834.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_0.n_834.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_1.n_673.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_1.n_673.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_2.n_241.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_2.n_241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_3.n_177.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_3.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_4.n_103.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_4.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_5.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_6.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_8.n_48.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_8.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_9.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_10.n_109.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_10.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_11.n_103.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_11.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_12.n_94.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_12.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_13.n_79.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_13.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_14.n_78.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_14.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_15.n_70.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_15.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_16.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_17.n_52.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_17.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_18.n_49.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_18.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_19.n_47.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_19.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_1.n_786.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_1.n_786.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_21.n_28.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_21.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_22.n_21.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_22.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_23.n_20.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_23.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_2.n_527.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_2.n_527.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_3.n_276.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_3.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_4.n_212.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_4.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_5.n_155.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_5.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_6.n_129.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_6.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_7.n_129.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_7.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_8.n_127.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_8.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_9.n_121.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_9.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_0.n_502.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_0.n_502.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_10.n_141.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_10.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_11.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_12.n_126.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_12.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_13.n_123.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_13.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_14.n_117.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_14.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_15.n_115.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_15.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_16.n_95.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_16.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_17.n_95.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_17.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_18.n_94.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_18.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_19.n_74.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_19.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_1.n_435.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_1.n_435.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_20.n_66.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_20.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_21.n_55.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_21.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_22.n_54.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_22.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_23.n_53.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_23.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_24.n_51.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_24.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_2.n_381.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_2.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_3.n_350.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_3.n_350.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_4.n_330.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_4.n_330.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_5.n_295.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_5.n_295.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_6.n_294.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_6.n_294.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_7.n_266.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_7.n_266.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_1.n_673.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_1.n_673.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_2.n_241.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_2.n_241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_3.n_177.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_3.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_4.n_103.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_4.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_5.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_6.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_8.n_48.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_8.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_9.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_10.n_109.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_10.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_11.n_103.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_11.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_12.n_94.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_12.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_13.n_79.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_13.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_14.n_78.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_14.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_15.n_70.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_15.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_16.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_17.n_52.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_17.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_18.n_49.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_18.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_19.n_47.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_19.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_1.n_786.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_1.n_786.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_20.n_42.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_20.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_21.n_28.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_21.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_22.n_21.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_22.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_23.n_20.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_23.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_2.n_527.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_2.n_527.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_3.n_276.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_3.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_4.n_212.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_4.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_5.n_155.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_5.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_6.n_129.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_6.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_7.n_129.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_7.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_8.n_127.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_8.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_9.n_121.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_9.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_0.n_1042.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_0.n_1042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_10.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_11.n_27.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_11.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_1.n_445.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_1.n_445.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_2.n_291.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_2.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_3.n_119.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_3.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_5.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_6.n_89.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_6.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_7.n_64.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_7.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_8.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_9.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_0.n_217.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_0.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_1.n_169.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_1.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_2.n_73.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_2.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_3.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_0.n_782.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_0.n_782.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_10.n_125.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_10.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_11.n_124.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_11.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_12.n_116.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_12.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_13.n_81.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_13.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_14.n_73.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_14.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_15.n_34.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_15.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_1.n_753.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_1.n_753.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_2.n_742.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_2.n_742.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_3.n_279.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_3.n_279.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_4.n_220.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_4.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_5.n_180.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_5.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_6.n_179.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_6.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_7.n_158.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_7.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_8.n_143.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_8.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_9.n_141.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_9.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_0.n_2050.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_0.n_2050.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_1.n_1533.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_1.n_1533.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_2.n_1487.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_2.n_1487.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_3.n_522.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_3.n_522.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_4.n_232.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_4.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_5.n_90.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_5.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_6.n_81.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_6.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_7.n_47.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_7.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_8.n_46.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_8.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_9.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_0.n_8555.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_0.n_8555.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_10.n_39.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_10.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_11.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_1.n_4959.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_1.n_4959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_2.n_4422.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_2.n_4422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_3.n_4022.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_3.n_4022.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_4.n_695.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_4.n_695.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_5.n_588.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_5.n_588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_6.n_522.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_6.n_522.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_7.n_447.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_7.n_447.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_8.n_391.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_8.n_391.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_9.n_359.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_9.n_359.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_0.n_612.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_0.n_612.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_10.n_148.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_10.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_11.n_128.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_11.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_12.n_92.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_12.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_13.n_77.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_13.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_14.n_73.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_14.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_15.n_71.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_15.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_16.n_65.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_16.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_17.n_50.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_17.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_18.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_19.n_30.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_19.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_1.n_264.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_1.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_2.n_231.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_2.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_3.n_224.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_3.n_224.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_5.n_207.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_5.n_207.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_8.n_163.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_8.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_9.n_153.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_9.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_0.n_719.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_0.n_719.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_10.n_86.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_10.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_11.n_70.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_11.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_12.n_52.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_12.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_13.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_14.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_15.n_36.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_15.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_16.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_17.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_18.n_28.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_18.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_19.n_28.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_19.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_1.n_424.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_1.n_424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_20.n_25.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_20.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_21.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_22.n_20.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_22.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_2.n_212.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_2.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_3.n_180.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_3.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_4.n_162.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_4.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_5.n_140.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_5.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_6.n_125.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_6.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_7.n_117.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_7.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_8.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_9.n_91.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_9.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_0.n_458.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_0.n_458.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_10.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_11.n_37.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_11.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_12.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_14.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_1.n_279.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_1.n_279.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_2.n_96.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_2.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_3.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_4.n_93.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_4.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_5.n_81.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_5.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_6.n_81.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_6.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_7.n_75.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_7.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_8.n_73.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_8.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_9.n_66.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_9.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_0.n_460.CWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_0.n_460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_1.n_120.CWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_1.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_2.n_94.CWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_2.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_3.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_4.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_5.n_42.CWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_5.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_6.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_0.n_2402.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_0.n_2402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_10.n_285.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_10.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_11.n_261.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_11.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_12.n_228.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_12.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_13.n_182.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_13.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_14.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_15.n_36.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_15.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_16.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_1.n_1781.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_1.n_1781.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_2.n_1090.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_2.n_1090.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_3.n_908.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_3.n_908.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_4.n_877.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_4.n_877.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_5.n_864.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_5.n_864.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_6.n_820.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_6.n_820.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_7.n_524.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_7.n_524.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_8.n_326.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_8.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_9.n_300.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_9.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_0.n_2600.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_0.n_2600.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_10.n_113.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_10.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_11.n_113.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_11.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_12.n_97.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_12.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_13.n_83.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_13.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_14.n_74.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_14.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_15.n_35.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_15.n_35.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_3.n_409.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_3.n_409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_4.n_344.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_4.n_344.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_5.n_252.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_5.n_252.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_6.n_187.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_6.n_187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_7.n_170.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_7.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_8.n_159.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_8.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_9.n_124.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_9.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_10.n_143.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_10.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_11.n_136.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_11.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_12.n_112.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_12.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_13.n_101.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_13.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_14.n_93.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_14.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_15.n_90.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_15.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_16.n_65.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_16.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_17.n_59.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_17.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_18.n_52.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_18.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_19.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_1.n_1370.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_1.n_1370.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_20.n_47.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_20.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_21.n_36.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_21.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_22.n_33.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_22.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_2.n_689.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_2.n_689.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_3.n_594.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_3.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_4.n_514.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_4.n_514.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_5.n_483.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_5.n_483.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_6.n_330.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_6.n_330.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_7.n_273.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_7.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_8.n_167.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_8.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_9.n_146.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_9.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_0.n_1999.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_0.n_1999.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_10.n_143.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_10.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_11.n_136.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_11.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_12.n_112.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_12.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_13.n_101.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_13.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_14.n_93.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_14.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_15.n_90.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_15.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_16.n_65.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_16.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_17.n_59.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_17.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_18.n_52.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_18.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_19.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_1.n_1370.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_1.n_1370.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_20.n_47.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_20.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_21.n_36.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_21.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_22.n_33.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_22.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_2.n_689.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_2.n_689.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_3.n_594.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_3.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_4.n_514.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_4.n_514.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_5.n_483.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_5.n_483.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_6.n_330.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_6.n_330.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_7.n_273.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_7.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_8.n_167.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_8.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_9.n_146.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_9.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_0.n_357.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_0.n_357.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_10.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_1.n_191.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_1.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_2.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_3.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_4.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_5.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_6.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_7.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_8.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_9.n_22.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_9.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_0.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_1.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_0.n_1809.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_0.n_1809.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_1.n_38.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_1.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_2.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_0.n_1354.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_0.n_1354.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_1.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_2.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR000FCI.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR000FCI.bestfold.profile.pattern_0.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR000FCI.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR000FCI.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_0.n_1309.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_0.n_1309.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_1.n_105.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_1.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_2.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_3.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_0.n_372.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_0.n_372.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_1.n_223.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_1.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_2.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_3.n_49.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_3.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_4.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_5.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR000EVR.bestfold.profile.pattern_0.n_532.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR000EVR.bestfold.profile.pattern_0.n_532.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR000EVR.bestfold.profile.pattern_1.n_82.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR000EVR.bestfold.profile.pattern_1.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_0.n_1773.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_0.n_1773.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_10.n_170.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_10.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_11.n_164.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_11.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_12.n_144.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_12.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_13.n_134.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_13.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_14.n_132.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_14.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_15.n_129.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_15.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_16.n_118.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_16.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_17.n_109.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_17.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_18.n_104.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_18.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_19.n_90.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_19.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_1.n_1578.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_1.n_1578.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_20.n_85.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_20.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_21.n_82.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_21.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_22.n_81.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_22.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_23.n_74.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_23.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_24.n_72.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_24.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_25.n_56.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_25.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_26.n_42.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_26.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_27.n_27.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_27.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_28.n_24.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_28.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_2.n_1263.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_2.n_1263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_3.n_1238.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_3.n_1238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_4.n_385.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_4.n_385.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_5.n_324.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_5.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_6.n_319.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_6.n_319.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_7.n_316.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_7.n_316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_8.n_302.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_8.n_302.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_9.n_199.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_9.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_0.n_956.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_0.n_956.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_1.n_344.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_1.n_344.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_2.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_3.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_4.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EWE.bestfold.profile.pattern_0.n_280.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EWE.bestfold.profile.pattern_0.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_0.n_1114.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_0.n_1114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_1.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_2.n_100.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_2.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_3.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_0.n_3169.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_0.n_3169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_10.n_672.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_10.n_672.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_11.n_558.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_11.n_558.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_12.n_546.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_12.n_546.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_13.n_334.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_13.n_334.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_14.n_313.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_14.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_15.n_172.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_15.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_16.n_60.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_16.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_17.n_55.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_17.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_18.n_42.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_18.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_19.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_1.n_2534.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_1.n_2534.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_2.n_2407.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_2.n_2407.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_3.n_1983.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_3.n_1983.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_4.n_1962.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_4.n_1962.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_5.n_1899.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_5.n_1899.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_6.n_1204.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_6.n_1204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_7.n_1095.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_7.n_1095.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_8.n_1080.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_8.n_1080.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_9.n_729.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_9.n_729.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_0.n_6265.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_0.n_6265.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_10.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_10.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_11.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_12.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_13.n_36.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_13.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_1.n_4237.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_1.n_4237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_2.n_3975.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_2.n_3975.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_3.n_3694.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_3.n_3694.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_4.n_931.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_4.n_931.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_5.n_630.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_5.n_630.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_7.n_171.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_7.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_8.n_110.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_8.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_9.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_0.n_3505.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_0.n_3505.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_10.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_10.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_11.n_146.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_11.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_12.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_12.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_13.n_133.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_13.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_14.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_15.n_114.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_15.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_16.n_88.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_16.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_17.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_17.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_18.n_36.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_18.n_36.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_3.n_1326.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_3.n_1326.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_10.n_188.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_10.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_11.n_136.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_11.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_12.n_126.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_12.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_14.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_16.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_1.n_2238.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_1.n_2238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_2.n_912.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_2.n_912.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_3.n_906.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_3.n_906.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_4.n_820.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_4.n_820.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_5.n_621.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_5.n_621.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_6.n_468.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_6.n_468.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_7.n_335.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_7.n_335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_8.n_253.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_8.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_9.n_237.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_9.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_0.n_1008.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_0.n_1008.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_10.n_109.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_10.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_11.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_11.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_12.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_12.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_13.n_56.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_13.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_14.n_56.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_14.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_15.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_16.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_17.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_18.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_1.n_961.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_1.n_961.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_2.n_451.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_2.n_451.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_3.n_337.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_3.n_337.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_4.n_270.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_4.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_5.n_269.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_5.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_6.n_228.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_6.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_7.n_163.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_7.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_8.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_8.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_9.n_121.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_9.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_0.n_10300.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_0.n_10300.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_2.n_1002.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_2.n_1002.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_3.n_988.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_3.n_988.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_4.n_553.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_4.n_553.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_5.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_5.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_6.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_6.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_7.n_136.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_7.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_8.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_8.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_9.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_9.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_0.n_3180.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_0.n_3180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_10.n_188.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_10.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_11.n_136.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_11.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_12.n_126.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_12.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_14.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_16.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_1.n_2238.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_1.n_2238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_2.n_912.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_2.n_912.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_3.n_906.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_3.n_906.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_4.n_820.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_4.n_820.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_5.n_621.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_5.n_621.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_6.n_468.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_6.n_468.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_7.n_335.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_7.n_335.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_8.n_253.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_8.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_9.n_237.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_9.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_0.n_1008.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_0.n_1008.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_10.n_109.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_10.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_11.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_11.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_12.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_12.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_13.n_56.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_13.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_14.n_56.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_14.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_15.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_16.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_17.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_18.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_1.n_961.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_1.n_961.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_3.n_337.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_3.n_337.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_4.n_270.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_4.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_5.n_269.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_5.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_6.n_228.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_6.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_7.n_163.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_7.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_8.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_8.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_9.n_121.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_9.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_0.n_16430.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_0.n_16430.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_1.n_1740.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_1.n_1740.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_2.n_700.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_2.n_700.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_3.n_364.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_3.n_364.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_4.n_317.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_4.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_5.n_107.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_5.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_6.n_99.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_6.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_7.n_97.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_7.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_8.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_8.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_9.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_0.n_3630.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_0.n_3630.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_10.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_10.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_11.n_144.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_11.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_12.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_12.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_13.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_13.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_14.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_14.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_15.n_29.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_15.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_16.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_17.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_18.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_18.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_19.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_19.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_1.n_2387.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_1.n_2387.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_20.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_20.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_2.n_1998.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_2.n_1998.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_3.n_543.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_3.n_543.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_4.n_495.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_4.n_495.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_5.n_438.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_5.n_438.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_6.n_385.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_6.n_385.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_7.n_229.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_7.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_8.n_191.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_8.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_9.n_187.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_9.n_187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_0.n_1604.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_0.n_1604.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_10.n_120.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_10.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_11.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_12.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_12.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_13.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_13.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_14.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_15.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_16.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_1.n_1124.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_1.n_1124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_2.n_1096.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_2.n_1096.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_3.n_1062.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_3.n_1062.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_4.n_397.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_4.n_397.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_5.n_280.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_5.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_6.n_215.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_6.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_7.n_199.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_7.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_8.n_136.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_8.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_9.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_0.n_470.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_0.n_470.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_1.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_2.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_3.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_4.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_5.n_54.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_5.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_6.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_7.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_8.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_0.n_2524.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_0.n_2524.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_10.n_190.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_10.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_11.n_100.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_11.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_12.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_12.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_13.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_14.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_1.n_1860.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_1.n_1860.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_2.n_1590.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_2.n_1590.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_3.n_1459.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_3.n_1459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_4.n_1263.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_4.n_1263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_5.n_584.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_5.n_584.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_6.n_551.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_6.n_551.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_7.n_416.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_7.n_416.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_8.n_283.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_8.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_9.n_203.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_9.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_0.n_2524.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_0.n_2524.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_10.n_190.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_10.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_11.n_100.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_11.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_12.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_12.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_13.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_14.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_1.n_1860.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_1.n_1860.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_2.n_1590.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_2.n_1590.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_3.n_1459.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_3.n_1459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_4.n_1263.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_4.n_1263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_5.n_584.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_5.n_584.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_6.n_551.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_6.n_551.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_7.n_416.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_7.n_416.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_8.n_283.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_8.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_9.n_203.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_9.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_0.n_2195.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_0.n_2195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_1.n_387.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_1.n_387.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_2.n_157.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_2.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_3.n_152.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_3.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_4.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_5.n_76.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_5.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_6.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_8.n_31.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_1.n_164.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_1.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_2.n_160.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_2.n_160.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_5.n_125.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_5.n_125.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_7.n_87.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_7.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_8.n_51.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_8.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_9.n_47.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_10.n_366.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_10.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_11.n_237.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_11.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_12.n_226.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_12.n_226.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_15.n_63.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_6.n_597.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_6.n_597.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_8.n_531.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_8.n_531.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_9.n_394.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_9.n_394.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_10.n_334.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_10.n_334.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_28.n_63.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_28.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_29.n_51.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_29.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_2.n_620.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_2.n_620.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_30.n_50.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_30.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_31.n_26.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_31.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_32.n_25.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_32.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_3.n_522.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_3.n_522.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_4.n_503.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_4.n_503.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_5.n_459.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_5.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_6.n_441.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_6.n_441.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_7.n_435.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_7.n_435.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_8.n_427.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_8.n_427.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_9.n_343.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_9.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_0.n_923.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_0.n_923.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_10.n_334.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_10.n_334.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_11.n_318.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_11.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_12.n_296.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_12.n_296.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_13.n_254.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_13.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_14.n_221.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_14.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_15.n_161.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_15.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_16.n_154.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_16.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_17.n_153.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_17.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_18.n_146.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_18.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_19.n_136.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_19.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_1.n_846.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_1.n_846.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_20.n_132.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_20.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_21.n_124.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_21.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_22.n_102.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_22.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_23.n_96.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_23.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_24.n_96.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_24.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_25.n_95.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_25.n_95.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_27.n_75.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_27.n_75.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_30.n_50.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_30.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_31.n_26.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_31.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_32.n_25.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_32.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_3.n_522.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_3.n_522.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_4.n_503.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_4.n_503.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_5.n_459.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_5.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_6.n_441.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_6.n_441.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_7.n_435.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_7.n_435.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_8.n_427.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_8.n_427.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_9.n_343.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_9.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_0.n_4941.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_0.n_4941.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_10.n_103.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_10.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_11.n_82.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_11.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_12.n_60.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_12.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_13.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_14.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_15.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_16.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_1.n_4505.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_1.n_4505.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_2.n_3752.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_2.n_3752.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_3.n_1848.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_3.n_1848.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_4.n_1471.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_4.n_1471.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_5.n_1179.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_5.n_1179.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_8.n_182.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_8.n_182.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_0.n_1667.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_0.n_1667.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_1.n_243.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_1.n_243.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_4.n_126.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_4.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_5.n_109.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_5.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_6.n_103.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_6.n_103.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_11.n_55.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_11.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_12.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_1.n_2518.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_1.n_2518.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_2.n_1214.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_2.n_1214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_3.n_385.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_3.n_385.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_4.n_242.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_4.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_5.n_146.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_5.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_6.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_7.n_123.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_7.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_8.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_9.n_69.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_9.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_0.n_947.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_0.n_947.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_10.n_43.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_10.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_11.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_12.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_1.n_563.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_1.n_563.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_2.n_430.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_2.n_430.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_3.n_250.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_3.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_4.n_123.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_4.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_5.n_101.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_5.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_6.n_82.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_6.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_7.n_78.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_7.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_8.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_0.n_1445.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_0.n_1445.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_10.n_67.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_10.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_11.n_48.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_11.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_12.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_13.n_28.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_13.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_1.n_992.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_1.n_992.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_2.n_844.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_2.n_844.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_3.n_831.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_3.n_831.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_4.n_514.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_4.n_514.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_5.n_295.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_5.n_295.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_6.n_289.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_6.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_7.n_149.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_7.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_8.n_117.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_8.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_9.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_0.n_18248.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_0.n_18248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_10.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_10.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_1.n_1239.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_1.n_1239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_2.n_671.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_2.n_671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_3.n_526.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_3.n_526.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_4.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_5.n_298.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_5.n_298.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_6.n_178.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_6.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_7.n_149.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_7.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_8.n_90.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_8.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_9.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_0.n_16057.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_0.n_16057.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_10.n_96.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_10.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_11.n_95.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_11.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_12.n_91.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_12.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_13.n_78.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_13.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_14.n_65.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_14.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_15.n_62.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_15.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_16.n_53.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_16.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_17.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_19.n_40.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_19.n_40.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_7.n_47.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_7.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_8.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_0.n_358.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_0.n_358.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_10.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_11.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_1.n_108.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_1.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_2.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_3.n_100.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_3.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_4.n_91.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_4.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_5.n_90.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_5.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_6.n_71.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_6.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_7.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_8.n_43.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_8.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_9.n_37.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_9.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_0.n_3278.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_0.n_3278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_10.n_291.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_10.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_11.n_255.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_11.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_12.n_236.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_12.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_13.n_174.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_13.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_14.n_170.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_14.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_15.n_146.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_15.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_16.n_125.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_16.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_17.n_110.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_17.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_18.n_99.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_18.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_19.n_91.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_19.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_1.n_2292.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_1.n_2292.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_20.n_57.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_20.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_21.n_47.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_21.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_22.n_40.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_22.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_23.n_37.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_23.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_24.n_32.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_24.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_25.n_26.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_25.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_2.n_1250.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_2.n_1250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_3.n_1213.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_3.n_1213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_4.n_882.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_4.n_882.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_5.n_758.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_5.n_758.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_6.n_551.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_6.n_551.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_7.n_472.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_7.n_472.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_8.n_369.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_8.n_369.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_9.n_322.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_9.n_322.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_0.n_3814.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_0.n_3814.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_10.n_340.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_10.n_340.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_11.n_303.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_11.n_303.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_12.n_280.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_12.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_13.n_273.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_13.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_14.n_263.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_14.n_263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_15.n_215.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_15.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_16.n_205.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_16.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_17.n_167.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_17.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_18.n_129.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_18.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_19.n_104.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_19.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_1.n_1564.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_1.n_1564.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_20.n_100.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_20.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_21.n_72.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_21.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_22.n_29.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_22.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_23.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_24.n_28.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_24.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_25.n_22.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_25.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_2.n_1347.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_2.n_1347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_3.n_712.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_3.n_712.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_4.n_683.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_4.n_683.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_5.n_561.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_5.n_561.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_6.n_470.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_6.n_470.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_7.n_433.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_7.n_433.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_8.n_413.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_8.n_413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_9.n_406.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_9.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_10.n_215.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_10.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_11.n_210.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_11.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_12.n_203.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_12.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_13.n_189.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_13.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_14.n_99.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_14.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_15.n_82.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_15.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_16.n_76.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_16.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_17.n_75.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_17.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_18.n_66.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_18.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_19.n_61.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_19.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_1.n_814.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_1.n_814.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_22.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_23.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_24.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_25.n_21.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_25.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_2.n_407.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_2.n_407.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_3.n_379.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_3.n_379.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_4.n_350.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_4.n_350.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_5.n_309.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_5.n_309.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_6.n_286.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_6.n_286.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_7.n_248.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_7.n_248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_8.n_231.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_8.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_9.n_228.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_9.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_10.n_215.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_10.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_11.n_210.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_11.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_12.n_203.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_12.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_13.n_189.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_13.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_14.n_99.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_14.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_15.n_82.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_15.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_16.n_76.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_16.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_17.n_75.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_17.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_18.n_66.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_18.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_19.n_61.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_19.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_1.n_814.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_1.n_814.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_22.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_23.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_24.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_25.n_21.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_25.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_2.n_407.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_2.n_407.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_3.n_379.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_3.n_379.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_4.n_350.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_4.n_350.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_5.n_309.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_5.n_309.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_6.n_286.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_6.n_286.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_7.n_248.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_7.n_248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_8.n_231.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_8.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_9.n_228.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_9.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.CWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_0.n_2952.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_0.n_2952.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_10.n_250.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_10.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_11.n_214.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_11.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_12.n_189.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_12.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_13.n_163.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_13.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_14.n_147.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_14.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_15.n_140.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_15.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_16.n_133.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_16.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_17.n_72.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_17.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_18.n_61.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_18.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_19.n_60.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_19.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_1.n_1539.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_1.n_1539.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_20.n_55.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_20.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_21.n_47.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_21.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_22.n_36.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_22.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_23.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_24.n_22.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_24.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_2.n_1524.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_2.n_1524.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_3.n_982.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_3.n_982.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_4.n_686.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_4.n_686.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_5.n_433.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_5.n_433.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_6.n_427.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_6.n_427.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_7.n_418.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_7.n_418.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_8.n_364.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_8.n_364.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_9.n_320.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_9.n_320.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_0.n_391.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_0.n_391.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_10.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_11.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_12.n_38.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_12.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_13.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_14.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_15.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_1.n_116.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_1.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_2.n_106.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_2.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_3.n_101.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_3.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_4.n_72.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_4.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_5.n_71.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_5.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_6.n_71.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_6.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_7.n_68.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_7.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_8.n_47.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_8.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_9.n_44.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_9.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_0.n_1279.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_0.n_1279.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_11.n_104.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_11.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_12.n_104.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_12.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_13.n_86.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_13.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_14.n_79.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_14.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_15.n_43.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_15.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_16.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_17.n_33.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_17.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_1.n_1161.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_1.n_1161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_2.n_1145.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_2.n_1145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_3.n_556.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_3.n_556.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_4.n_401.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_4.n_401.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_5.n_392.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_5.n_392.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_6.n_312.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_6.n_312.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_7.n_218.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_7.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_8.n_213.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_8.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_9.n_187.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_9.n_187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_0.n_6261.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_0.n_6261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_10.n_254.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_10.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_11.n_172.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_11.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_12.n_133.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_12.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_13.n_130.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_13.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_14.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_15.n_72.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_15.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_16.n_66.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_16.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_17.n_62.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_17.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_18.n_58.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_18.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_19.n_53.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_19.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_1.n_2226.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_1.n_2226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_20.n_44.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_20.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_21.n_37.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_21.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_22.n_29.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_22.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_23.n_24.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_23.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_24.n_22.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_24.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_25.n_21.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_25.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_2.n_1711.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_2.n_1711.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_3.n_1194.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_3.n_1194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_4.n_883.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_4.n_883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_5.n_839.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_5.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_6.n_718.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_6.n_718.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_7.n_687.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_7.n_687.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_8.n_462.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_8.n_462.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_9.n_270.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_9.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_0.n_3660.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_0.n_3660.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_10.n_71.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_10.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_11.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_12.n_65.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_12.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_13.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_14.n_29.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_14.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_1.n_573.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_1.n_573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_2.n_318.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_2.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_3.n_286.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_3.n_286.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_4.n_217.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_4.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_5.n_167.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_5.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_6.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_7.n_100.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_7.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_8.n_98.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_8.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_9.n_93.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_9.n_93.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_0.n_4485.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_0.n_4485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_10.n_323.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_10.n_323.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_11.n_258.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_11.n_258.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_12.n_247.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_12.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_13.n_191.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_13.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_14.n_158.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_14.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_15.n_138.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_15.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_16.n_88.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_16.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_17.n_70.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_17.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_18.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_19.n_36.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_19.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_1.n_3240.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_1.n_3240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_2.n_1947.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_2.n_1947.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_3.n_1946.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_3.n_1946.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_4.n_1288.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_4.n_1288.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_5.n_867.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_5.n_867.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_6.n_784.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_6.n_784.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_7.n_648.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_7.n_648.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_8.n_579.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_8.n_579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_9.n_447.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_9.n_447.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_0.n_1012.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_0.n_1012.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_10.n_179.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_10.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_11.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_12.n_145.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_12.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_13.n_138.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_13.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_14.n_124.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_14.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_15.n_113.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_15.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_16.n_94.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_16.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_17.n_86.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_17.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_18.n_58.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_18.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_19.n_42.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_19.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_1.n_805.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_1.n_805.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_20.n_39.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_20.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_21.n_33.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_21.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_22.n_22.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_22.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_2.n_720.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_2.n_720.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_3.n_346.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_3.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_4.n_270.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_4.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_5.n_269.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_5.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_6.n_250.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_6.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_7.n_237.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_7.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_8.n_219.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_8.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_9.n_199.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_9.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_0.n_2530.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_0.n_2530.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_10.n_56.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_10.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_11.n_48.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_11.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_12.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_1.n_1728.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_1.n_1728.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_2.n_1235.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_2.n_1235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_3.n_415.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_3.n_415.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_4.n_307.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_4.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_5.n_231.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_5.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_6.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_7.n_163.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_7.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_8.n_78.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_8.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_9.n_70.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_9.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_0.n_7707.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_0.n_7707.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_10.n_86.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_10.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_11.n_78.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_11.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_12.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_13.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_14.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_1.n_1472.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_1.n_1472.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_2.n_1273.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_2.n_1273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_3.n_594.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_3.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_4.n_561.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_4.n_561.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_5.n_424.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_5.n_424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_6.n_411.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_6.n_411.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_7.n_318.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_7.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_8.n_224.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_8.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_9.n_172.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_9.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_0.n_11531.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_0.n_11531.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_10.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_11.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_1.n_9604.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_1.n_9604.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_2.n_4086.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_2.n_4086.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_3.n_249.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_3.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_4.n_233.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_4.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_5.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_6.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_7.n_72.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_7.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_8.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000EUM.bestfold.profile.pattern_0.n_1796.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000EUM.bestfold.profile.pattern_0.n_1796.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_0.n_8731.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_0.n_8731.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_10.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_10.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_11.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_1.n_3779.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_1.n_3779.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_2.n_2400.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_2.n_2400.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_3.n_660.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_3.n_660.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_4.n_194.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_4.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_5.n_141.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_5.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_6.n_137.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_6.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_7.n_87.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_7.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_8.n_83.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_8.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_0.n_13583.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_0.n_13583.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_10.n_86.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_10.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_11.n_69.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_11.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_12.n_62.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_12.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_13.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_14.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_15.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_1.n_2622.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_1.n_2622.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_2.n_627.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_2.n_627.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_3.n_457.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_3.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_4.n_362.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_4.n_362.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_5.n_317.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_5.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_6.n_280.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_6.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_7.n_278.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_7.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_8.n_217.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_8.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_9.n_126.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_9.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_0.n_14948.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_0.n_14948.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_10.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_11.n_66.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_11.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_12.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_13.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_14.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_15.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_15.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_16.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_17.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_18.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_19.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_1.n_8174.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_1.n_8174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_2.n_4261.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_2.n_4261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_3.n_512.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_3.n_512.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_4.n_291.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_4.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_5.n_239.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_5.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_6.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_7.n_183.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_7.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_0.n_5609.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_0.n_5609.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_10.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_11.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_12.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_14.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_1.n_4708.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_1.n_4708.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_2.n_2781.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_2.n_2781.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_3.n_892.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_3.n_892.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_4.n_595.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_4.n_595.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_5.n_557.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_5.n_557.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_6.n_495.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_6.n_495.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_7.n_324.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_7.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_8.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_9.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_0.n_6283.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_0.n_6283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_10.n_30.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_2.n_386.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_2.n_386.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_0.n_8778.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_0.n_8778.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_10.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_10.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_1.n_3957.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_1.n_3957.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_2.n_3477.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_2.n_3477.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_3.n_549.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_3.n_549.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_4.n_487.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_4.n_487.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_5.n_235.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_5.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_6.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_7.n_143.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_7.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_8.n_112.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_8.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_9.n_55.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_9.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_0.n_9922.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_0.n_9922.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_10.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_11.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_1.n_2387.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_1.n_2387.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_2.n_1154.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_2.n_1154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_3.n_744.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_3.n_744.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_4.n_343.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_4.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_5.n_320.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_5.n_320.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_6.n_191.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_6.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_7.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_8.n_75.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_8.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_9.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_0.n_8283.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_0.n_8283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_10.n_146.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_10.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_11.n_105.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_11.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_12.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_12.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_13.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_14.n_50.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_14.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_15.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_1.n_2779.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_1.n_2779.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_2.n_958.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_2.n_958.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_3.n_574.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_3.n_574.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_4.n_479.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_4.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_5.n_404.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_5.n_404.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_6.n_275.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_6.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_7.n_201.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_7.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_8.n_196.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_8.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_9.n_179.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_9.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_0.n_18250.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_0.n_18250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_10.n_111.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_10.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_11.n_108.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_11.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_12.n_81.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_12.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_13.n_79.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_13.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_14.n_39.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_14.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_15.n_29.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_15.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_1.n_4600.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_1.n_4600.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_2.n_1812.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_2.n_1812.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_3.n_558.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_3.n_558.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_4.n_195.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_4.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_5.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_5.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_6.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_7.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_8.n_123.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_8.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_9.n_121.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_9.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_0.n_5267.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_0.n_5267.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_1.n_391.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_1.n_391.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_2.n_157.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_2.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_3.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_4.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_5.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_0.n_9647.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_0.n_9647.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_10.n_156.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_10.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_11.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_12.n_117.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_12.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_13.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_14.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_15.n_41.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_15.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_16.n_29.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_16.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_17.n_26.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_17.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_1.n_7692.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_1.n_7692.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_2.n_6885.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_2.n_6885.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_3.n_4455.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_3.n_4455.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_4.n_2057.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_4.n_2057.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_5.n_1151.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_5.n_1151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_6.n_1051.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_6.n_1051.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_7.n_672.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_7.n_672.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_8.n_355.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_8.n_355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_9.n_181.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_9.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_0.n_10987.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_0.n_10987.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_10.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_1.n_2515.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_1.n_2515.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_2.n_2144.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_2.n_2144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_3.n_929.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_3.n_929.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_4.n_677.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_4.n_677.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_5.n_332.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_5.n_332.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_6.n_177.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_6.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_7.n_152.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_7.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_8.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_9.n_48.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_9.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_0.n_3895.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_0.n_3895.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_1.n_660.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_1.n_660.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_2.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_0.n_11278.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_0.n_11278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_10.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_1.n_3966.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_1.n_3966.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_2.n_1117.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_2.n_1117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_3.n_1086.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_3.n_1086.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_4.n_470.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_4.n_470.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_5.n_421.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_5.n_421.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_6.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_7.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_8.n_58.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_8.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_9.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_0.n_8724.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_0.n_8724.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_10.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_10.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_11.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_12.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_13.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_1.n_1957.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_1.n_1957.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_2.n_1220.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_2.n_1220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_3.n_494.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_3.n_494.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_4.n_349.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_4.n_349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_5.n_203.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_5.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_6.n_156.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_6.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_7.n_124.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_7.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_8.n_97.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_8.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_9.n_73.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_9.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_0.n_7707.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_0.n_7707.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_10.n_86.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_10.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_11.n_78.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_11.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_12.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_13.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_14.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_1.n_1472.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_1.n_1472.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_2.n_1273.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_2.n_1273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_3.n_594.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_3.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_4.n_561.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_4.n_561.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_5.n_424.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_5.n_424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_6.n_411.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_6.n_411.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_7.n_318.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_7.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_8.n_224.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_8.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_9.n_172.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_9.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_0.n_11531.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_0.n_11531.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_10.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_11.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_1.n_9604.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_1.n_9604.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_2.n_4086.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_2.n_4086.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_3.n_249.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_3.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_4.n_233.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_4.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_5.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_6.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_7.n_72.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_7.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_8.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000EUM.bestfold.profile.pattern_0.n_1796.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000EUM.bestfold.profile.pattern_0.n_1796.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_0.n_8731.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_0.n_8731.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_10.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_10.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_11.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_1.n_3779.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_1.n_3779.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_2.n_2400.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_2.n_2400.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_3.n_660.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_3.n_660.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_4.n_194.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_4.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_5.n_141.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_5.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_6.n_137.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_6.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_7.n_87.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_7.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_8.n_83.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_8.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_0.n_13583.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_0.n_13583.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_10.n_86.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_10.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_11.n_69.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_11.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_12.n_62.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_12.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_13.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_14.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_15.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_1.n_2622.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_1.n_2622.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_2.n_627.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_2.n_627.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_3.n_457.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_3.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_4.n_362.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_4.n_362.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_5.n_317.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_5.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_6.n_280.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_6.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_7.n_278.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_7.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_8.n_217.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_8.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_9.n_126.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_9.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_0.n_14948.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_0.n_14948.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_10.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_11.n_66.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_11.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_12.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_13.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_14.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_15.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_15.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_16.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_17.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_18.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_19.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_1.n_8174.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_1.n_8174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_2.n_4261.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_2.n_4261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_3.n_512.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_3.n_512.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_4.n_291.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_4.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_5.n_239.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_5.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_6.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_7.n_183.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_7.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_0.n_5609.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_0.n_5609.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_10.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_11.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_12.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_14.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_1.n_4708.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_1.n_4708.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_2.n_2781.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_2.n_2781.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_3.n_892.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_3.n_892.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_4.n_595.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_4.n_595.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_5.n_557.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_5.n_557.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_6.n_495.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_6.n_495.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_7.n_324.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_7.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_8.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_9.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_0.n_6283.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_0.n_6283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_10.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_1.n_412.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_1.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_2.n_386.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_2.n_386.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_3.n_281.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_3.n_281.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_4.n_106.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_4.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_5.n_76.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_5.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_6.n_68.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_6.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_7.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_8.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_9.n_44.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_9.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_6.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_7.n_143.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_7.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_8.n_112.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_8.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_9.n_55.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_9.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_0.n_9922.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_0.n_9922.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_10.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_11.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_1.n_2387.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_1.n_2387.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_2.n_1154.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_2.n_1154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_3.n_744.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_3.n_744.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_4.n_343.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_4.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_5.n_320.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_5.n_320.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_6.n_191.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_6.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_7.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_8.n_75.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_8.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_9.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_0.n_8283.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_0.n_8283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_10.n_146.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_10.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_11.n_105.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_11.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_12.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_12.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_13.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_14.n_50.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_14.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_15.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_1.n_2779.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_1.n_2779.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_2.n_958.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_2.n_958.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_3.n_574.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_3.n_574.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_4.n_479.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_4.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_5.n_404.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_5.n_404.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_6.n_275.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_6.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_7.n_201.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_7.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_8.n_196.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_8.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_9.n_179.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_9.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_0.n_18250.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_0.n_18250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_10.n_111.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_10.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_11.n_108.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_11.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_12.n_81.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_12.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_13.n_79.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_13.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_14.n_39.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_14.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_15.n_29.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_15.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_1.n_4600.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_1.n_4600.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_2.n_1812.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_2.n_1812.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_3.n_558.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_3.n_558.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_4.n_195.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_4.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_5.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_5.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_6.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_7.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_8.n_123.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_8.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_9.n_121.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_9.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_0.n_5267.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_0.n_5267.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_1.n_391.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_1.n_391.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_2.n_157.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_2.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_3.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_4.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_5.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_0.n_9647.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_0.n_9647.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_10.n_156.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_10.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_11.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_12.n_117.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_12.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_13.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_14.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_15.n_41.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_15.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_16.n_29.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_16.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_17.n_26.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_17.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_1.n_7692.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_1.n_7692.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_2.n_6885.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_2.n_6885.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_3.n_4455.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_3.n_4455.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_4.n_2057.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_4.n_2057.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_5.n_1151.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_5.n_1151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_6.n_1051.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_6.n_1051.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_7.n_672.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_7.n_672.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_8.n_355.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_8.n_355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_9.n_181.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_9.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_0.n_10987.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_0.n_10987.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_10.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_1.n_2515.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_1.n_2515.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_2.n_2144.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_2.n_2144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_3.n_929.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_3.n_929.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_4.n_677.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_4.n_677.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_5.n_332.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_5.n_332.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_6.n_177.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_6.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_7.n_152.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_7.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_8.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_9.n_48.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_9.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_0.n_3895.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_0.n_3895.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_1.n_660.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_1.n_660.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_2.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_0.n_11278.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_0.n_11278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_10.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_1.n_3966.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_1.n_3966.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_2.n_1117.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_2.n_1117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_3.n_1086.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_3.n_1086.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_4.n_470.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_4.n_470.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_5.n_421.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_5.n_421.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_6.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_7.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_8.n_58.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_8.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_9.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_0.n_8724.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_0.n_8724.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_10.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_10.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_11.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_12.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_13.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_1.n_1957.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_1.n_1957.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_2.n_1220.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_2.n_1220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_3.n_494.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_3.n_494.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_4.n_349.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_4.n_349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_5.n_203.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_5.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_6.n_156.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_6.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_7.n_124.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_7.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_8.n_97.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_8.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_9.n_73.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_9.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_0.n_8193.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_0.n_8193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_1.n_388.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_1.n_388.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_3.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_0.n_1492.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_0.n_1492.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_10.n_133.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_10.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_11.n_128.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_11.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_12.n_127.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_12.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_13.n_112.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_13.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_14.n_99.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_14.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_15.n_84.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_15.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_16.n_73.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_16.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_17.n_59.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_17.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_18.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_1.n_952.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_1.n_952.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_2.n_586.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_2.n_586.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_3.n_506.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_3.n_506.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_4.n_468.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_4.n_468.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_5.n_300.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_5.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_6.n_234.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_6.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_7.n_225.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_7.n_225.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_8.n_164.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_8.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_9.n_154.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_9.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_4.n_173.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_4.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_5.n_172.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_5.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_6.n_156.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_6.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_7.n_139.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_7.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_8.n_135.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_8.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_9.n_134.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_9.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_0.n_1196.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_0.n_1196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_1.n_1055.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_1.n_1055.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_2.n_309.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_2.n_309.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_3.n_241.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_3.n_241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_4.n_149.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_4.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_5.n_76.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_5.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_6.n_49.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_6.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_7.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_8.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_0.n_1039.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_0.n_1039.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_1.n_703.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_1.n_703.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_2.n_247.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_2.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_3.n_122.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_3.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_4.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_5.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_0.n_189.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_0.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_10.n_43.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_10.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_11.n_31.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_11.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_12.n_27.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_12.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_13.n_27.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_13.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_14.n_24.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_14.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_15.n_23.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_15.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_1.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_2.n_75.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_2.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_3.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_4.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_5.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_6.n_64.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_6.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_7.n_61.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_7.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_8.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_9.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_0.n_132.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_0.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_10.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_11.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_12.n_70.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_12.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_13.n_69.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_13.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_14.n_68.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_14.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_15.n_65.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_15.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_16.n_63.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_16.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_17.n_59.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_17.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_18.n_56.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_18.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_19.n_55.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_19.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_1.n_128.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_1.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_20.n_55.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_20.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_21.n_54.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_21.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_22.n_49.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_22.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_23.n_48.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_23.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_24.n_37.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_24.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_25.n_35.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_25.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_26.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_27.n_33.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_27.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_28.n_30.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_28.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_29.n_28.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_29.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_2.n_126.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_2.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_3.n_114.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_3.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_4.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_5.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_6.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_7.n_101.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_7.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_8.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_9.n_83.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_9.n_83.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_10.n_136.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_10.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_11.n_126.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_11.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_12.n_97.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_12.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_13.n_77.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_13.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_14.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_1.n_364.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_1.n_364.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_2.n_285.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_2.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_3.n_275.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_3.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_4.n_270.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_4.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_5.n_267.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_5.n_267.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_6.n_264.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_6.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_7.n_254.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_7.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_8.n_218.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_8.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_9.n_153.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_9.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_0.n_3165.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_0.n_3165.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_11.n_82.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_11.n_82.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_1.n_1792.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_1.n_1792.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_2.n_1692.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_2.n_1692.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_8.n_185.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_8.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_9.n_155.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_9.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_0.n_142.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_0.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_1.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_2.n_91.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_2.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_3.n_87.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_3.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_4.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_6.n_49.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_6.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_7.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_8.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_9.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_0.n_2449.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_0.n_2449.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_10.n_50.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_10.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_11.n_28.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_11.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_12.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_13.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_1.n_2284.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_1.n_2284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_2.n_1676.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_2.n_1676.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_3.n_1266.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_3.n_1266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_4.n_771.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_4.n_771.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_5.n_206.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_5.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_6.n_205.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_6.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_7.n_166.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_7.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_8.n_117.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_8.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_9.n_71.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_9.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_0.n_926.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_0.n_926.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_10.n_91.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_10.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_11.n_84.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_11.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_12.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_13.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_14.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_16.n_40.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_16.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_17.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_1.n_405.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_1.n_405.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_2.n_224.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_2.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_3.n_185.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_3.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_4.n_178.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_4.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_5.n_153.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_5.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_6.n_135.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_6.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_7.n_127.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_7.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_8.n_111.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_8.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_9.n_92.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_9.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_0.n_926.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_0.n_926.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_10.n_91.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_10.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_11.n_84.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_11.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_12.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_13.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_14.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_16.n_40.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_16.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_17.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_1.n_405.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_1.n_405.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_2.n_224.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_2.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_3.n_185.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_3.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_4.n_178.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_4.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_5.n_153.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_5.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_6.n_135.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_6.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_7.n_127.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_7.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_8.n_111.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_8.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_9.n_92.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_9.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_0.n_2033.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_0.n_2033.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_1.n_1643.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_1.n_1643.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_2.n_692.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_2.n_692.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_3.n_604.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_3.n_604.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_4.n_499.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_4.n_499.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_5.n_231.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_5.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_6.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_7.n_141.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_7.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_8.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_9.n_31.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_9.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_0.n_2994.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_0.n_2994.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_10.n_146.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_10.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_11.n_106.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_11.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_12.n_98.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_12.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_13.n_90.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_13.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_14.n_81.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_14.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_15.n_80.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_15.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_16.n_70.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_16.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_17.n_66.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_17.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_18.n_40.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_18.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_19.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_1.n_468.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_1.n_468.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_20.n_24.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_20.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_21.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_2.n_228.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_2.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_3.n_224.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_3.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_4.n_213.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_4.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_5.n_188.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_5.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_6.n_187.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_6.n_187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_7.n_170.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_7.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_8.n_155.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_8.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_9.n_154.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_9.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_0.n_624.CWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_0.n_624.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_1.n_375.CWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_1.n_375.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_2.n_153.CWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_2.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_3.n_82.CWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_3.n_82.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_10.n_237.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_10.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_11.n_91.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_11.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_12.n_73.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_12.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_13.n_59.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_13.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_14.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_15.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_1.n_1946.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_1.n_1946.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_2.n_1914.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_2.n_1914.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_3.n_1885.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_3.n_1885.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_4.n_1424.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_4.n_1424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_5.n_674.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_5.n_674.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_6.n_537.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_6.n_537.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_7.n_377.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_7.n_377.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_8.n_372.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_8.n_372.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_9.n_310.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_9.n_310.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_0.n_1191.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_0.n_1191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_10.n_123.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_10.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_11.n_82.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_11.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_12.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_13.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_14.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_16.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_1.n_670.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_1.n_670.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_6.n_209.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_6.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_7.n_207.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_7.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_8.n_202.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_8.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_9.n_198.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_9.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.CWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_0.n_426.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_0.n_426.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_10.n_87.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_10.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_11.n_81.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_11.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_12.n_77.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_12.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_13.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_14.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_15.n_45.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_18.n_24.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_18.n_24.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_1.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_2.n_135.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_2.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_3.n_134.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_3.n_134.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_1.n_520.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_1.n_520.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_20.n_83.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_20.n_83.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_3.n_398.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_3.n_398.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_7.n_308.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_7.n_308.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_15.n_45.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_14.n_149.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_14.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_15.n_129.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_15.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_16.n_107.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_16.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_17.n_105.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_17.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_18.n_102.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_18.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_19.n_95.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_19.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_1.n_520.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_1.n_520.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_20.n_83.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_20.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_21.n_77.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_21.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_2.n_450.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_2.n_450.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_3.n_398.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_3.n_398.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_4.n_344.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_4.n_344.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_5.n_337.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_5.n_337.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_6.n_326.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_6.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_7.n_308.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_7.n_308.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_8.n_282.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_8.n_282.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_9.n_226.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_9.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF404-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_0.n_1776.CWM.meme motif-alignments-all-vs-all/ZNF404/ZNF404-201-vs-ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_0.n_1776.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF404-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all/ZNF404/ZNF404-201-vs-ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_1.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF404-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_2.n_49.CWM.meme motif-alignments-all-vs-all/ZNF404/ZNF404-201-vs-ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_2.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_0.n_353.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_0.n_353.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_10.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_11.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_1.n_182.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_1.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_2.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_3.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_4.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_5.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_6.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_7.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_9.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_0.n_2496.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_0.n_2496.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_10.n_106.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_10.n_106.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_1.n_80.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_1.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_2.n_74.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_2.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_3.n_71.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_3.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_4.n_69.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_4.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_5.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_6.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_7.n_58.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_7.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_8.n_51.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_8.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_9.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_0.n_573.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_0.n_573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_10.n_115.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_10.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_11.n_113.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_11.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_12.n_112.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_12.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_13.n_108.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_13.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_14.n_79.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_14.n_79.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_16.n_62.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_16.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_17.n_60.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_17.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_18.n_42.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_18.n_42.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_14.n_84.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_14.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_15.n_53.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_15.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_16.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_1.n_812.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_1.n_812.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_2.n_430.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_2.n_430.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_3.n_376.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_3.n_376.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_4.n_283.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_4.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_5.n_179.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_5.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_6.n_160.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_6.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_7.n_158.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_7.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_8.n_150.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_8.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_9.n_135.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_9.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_0.n_4110.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_0.n_4110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_1.n_3423.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_1.n_3423.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_2.n_179.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_2.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_3.n_158.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_3.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_5.n_91.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_5.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_6.n_89.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_6.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_7.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_8.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_1.n_347.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_1.n_347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_2.n_160.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_2.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_3.n_125.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_3.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_4.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_6.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_0.n_4110.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_0.n_4110.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_3.n_158.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_3.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_4.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_5.n_91.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_5.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_6.n_89.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_6.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_7.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_8.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_1.n_347.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_1.n_347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_2.n_160.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_2.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_3.n_125.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_3.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_4.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_6.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_0.n_4806.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_0.n_4806.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_10.n_288.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_10.n_288.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_11.n_287.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_11.n_287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_12.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_12.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_13.n_178.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_13.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_14.n_152.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_14.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_15.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_15.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_16.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_16.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_17.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_1.n_4037.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_1.n_4037.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_2.n_2352.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_2.n_2352.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_3.n_1815.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_3.n_1815.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_4.n_1515.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_4.n_1515.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_5.n_1363.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_5.n_1363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_6.n_1099.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_6.n_1099.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_7.n_797.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_7.n_797.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_8.n_390.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_8.n_390.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_9.n_382.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_9.n_382.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_0.n_864.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_0.n_864.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_10.n_88.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_10.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_11.n_79.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_11.n_79.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_13.n_72.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_13.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_14.n_62.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_14.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_15.n_60.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_15.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_16.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_16.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_17.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_17.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_18.n_37.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_18.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_19.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_19.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_1.n_188.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_1.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_20.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_20.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_21.n_29.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_21.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_22.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_22.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_23.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_23.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_24.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_25.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_25.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_2.n_170.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_2.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_3.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_3.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_4.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_4.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_5.n_132.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_5.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_6.n_118.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_6.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_7.n_109.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_7.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_8.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_8.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_9.n_91.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_9.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_0.n_124.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_0.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_10.n_49.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_10.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_11.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_12.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_13.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_14.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_15.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_1.n_110.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_1.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_2.n_105.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_2.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_3.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_4.n_75.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_4.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_5.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_6.n_69.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_6.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_7.n_68.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_7.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_8.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_9.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_0.n_5368.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_0.n_5368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_10.n_477.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_10.n_477.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_11.n_322.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_11.n_322.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_12.n_285.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_12.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_13.n_240.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_13.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_14.n_154.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_14.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_15.n_150.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_15.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_16.n_122.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_16.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_17.n_50.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_17.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_18.n_46.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_18.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_19.n_40.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_19.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_1.n_3281.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_1.n_3281.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_20.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_21.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_22.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_23.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_24.n_20.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_24.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_2.n_2246.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_2.n_2246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_3.n_1784.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_3.n_1784.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_4.n_1338.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_4.n_1338.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_5.n_973.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_5.n_973.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_6.n_568.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_6.n_568.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_7.n_557.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_7.n_557.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_8.n_504.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_8.n_504.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_9.n_480.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_9.n_480.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_0.n_1256.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_0.n_1256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_10.n_63.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_10.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_11.n_63.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_11.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_12.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_13.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_14.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_16.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_17.n_26.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_17.n_26.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_4.n_303.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_4.n_303.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_5.n_127.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_5.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_6.n_98.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_6.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_7.n_85.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_7.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_9.n_63.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_9.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_0.n_1554.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_0.n_1554.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_10.n_116.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_10.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_11.n_80.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_11.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_12.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_13.n_26.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_13.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_14.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_15.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_1.n_1258.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_1.n_1258.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_2.n_1073.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_2.n_1073.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_3.n_503.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_3.n_503.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_4.n_334.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_4.n_334.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_5.n_234.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_5.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_6.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_7.n_151.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_7.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_8.n_150.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_8.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_9.n_146.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_9.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_0.n_546.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_0.n_546.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_10.n_34.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_10.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_11.n_30.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_11.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_12.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_1.n_461.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_1.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_2.n_343.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_2.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_3.n_158.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_3.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_4.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_5.n_71.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_5.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_6.n_64.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_6.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_7.n_63.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_7.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_8.n_46.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_8.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_9.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_0.n_1616.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_0.n_1616.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_10.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_11.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_12.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_1.n_872.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_1.n_872.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_2.n_744.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_2.n_744.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_3.n_534.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_3.n_534.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_4.n_531.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_4.n_531.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_5.n_265.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_5.n_265.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_6.n_253.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_6.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_7.n_147.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_7.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_8.n_95.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_8.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_9.n_82.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_9.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_0.n_1153.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_0.n_1153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_10.n_56.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_10.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_11.n_45.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_11.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_12.n_27.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_12.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_13.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_1.n_427.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_1.n_427.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_2.n_230.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_2.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_3.n_221.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_3.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_4.n_141.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_4.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_5.n_116.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_5.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_6.n_109.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_6.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_7.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_9.n_66.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_9.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_0.n_3536.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_0.n_3536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_10.n_36.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_10.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_1.n_3338.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_1.n_3338.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_2.n_284.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_2.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_3.n_238.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_3.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_4.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_5.n_77.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_5.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_6.n_71.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_6.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_7.n_67.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_7.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_8.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_9.n_56.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_9.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_0.n_63.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_0.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_10.n_37.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_10.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_11.n_37.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_11.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_13.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_14.n_30.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_14.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_15.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_16.n_29.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_16.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_17.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_18.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_19.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_1.n_59.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_1.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_20.n_24.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_20.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_21.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_2.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_3.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_4.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_5.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_6.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_7.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_8.n_44.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_8.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_9.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_0.n_4705.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_0.n_4705.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_1.n_2047.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_1.n_2047.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_2.n_480.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_2.n_480.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_3.n_392.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_3.n_392.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_4.n_146.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_4.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_5.n_123.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_5.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_6.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_0.n_407.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_0.n_407.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_11.n_40.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_11.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_12.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_13.n_27.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_13.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_14.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_15.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_1.n_185.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_1.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_2.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_3.n_97.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_3.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_4.n_94.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_4.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_5.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_6.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_7.n_55.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_7.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_8.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_9.n_41.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_9.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_0.n_18074.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_0.n_18074.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_1.n_799.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_1.n_799.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_2.n_621.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_2.n_621.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_3.n_445.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_3.n_445.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_4.n_189.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_4.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_5.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_6.n_64.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_6.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_7.n_55.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_7.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_8.n_44.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_8.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_9.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_0.n_11721.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_0.n_11721.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_10.n_264.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_10.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_11.n_258.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_11.n_258.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_12.n_181.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_12.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_13.n_170.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_13.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_14.n_164.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_14.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_15.n_114.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_15.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_16.n_108.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_16.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_17.n_108.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_17.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_18.n_102.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_18.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_19.n_74.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_19.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_1.n_2979.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_1.n_2979.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_20.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_21.n_36.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_21.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_22.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_24.n_28.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_24.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_25.n_28.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_25.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_26.n_27.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_26.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_2.n_2098.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_2.n_2098.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_3.n_1926.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_3.n_1926.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_4.n_1014.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_4.n_1014.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_5.n_851.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_5.n_851.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_6.n_592.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_6.n_592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_7.n_502.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_7.n_502.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_8.n_419.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_8.n_419.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_9.n_349.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_9.n_349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_0.n_15803.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_0.n_15803.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_10.n_213.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_10.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_11.n_198.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_11.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_12.n_177.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_12.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_13.n_171.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_13.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_14.n_166.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_14.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_15.n_165.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_15.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_16.n_165.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_16.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_17.n_158.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_17.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_18.n_149.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_18.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_19.n_137.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_19.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_1.n_2911.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_1.n_2911.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_20.n_135.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_20.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_21.n_129.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_21.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_22.n_125.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_22.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_23.n_113.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_23.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_24.n_106.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_24.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_25.n_105.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_25.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_26.n_100.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_26.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_27.n_99.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_27.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_28.n_88.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_28.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_29.n_86.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_29.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_2.n_754.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_2.n_754.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_30.n_76.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_30.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_31.n_64.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_31.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_32.n_55.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_32.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_33.n_54.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_33.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_34.n_48.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_34.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_35.n_36.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_35.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_36.n_29.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_36.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_37.n_27.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_37.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_38.n_22.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_38.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_3.n_707.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_3.n_707.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_4.n_694.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_4.n_694.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_5.n_535.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_5.n_535.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_6.n_410.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_6.n_410.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_7.n_353.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_7.n_353.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_8.n_262.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_8.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_9.n_214.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_9.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_0.n_3584.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_0.n_3584.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_10.n_71.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_10.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_11.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_12.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_13.n_39.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_13.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_14.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_1.n_1935.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_1.n_1935.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_2.n_1445.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_2.n_1445.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_3.n_316.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_3.n_316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_4.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_5.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_6.n_236.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_6.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_7.n_230.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_7.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_8.n_180.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_8.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_9.n_71.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_9.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_0.n_6129.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_0.n_6129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_10.n_61.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_10.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_11.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_12.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_1.n_1213.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_1.n_1213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_2.n_771.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_2.n_771.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_3.n_597.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_3.n_597.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_4.n_518.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_4.n_518.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_5.n_408.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_5.n_408.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_6.n_319.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_6.n_319.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_7.n_266.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_7.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_8.n_174.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_8.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_9.n_63.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_9.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_0.n_15253.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_0.n_15253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_10.n_255.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_10.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_11.n_205.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_11.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_12.n_192.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_12.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_13.n_169.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_13.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_14.n_153.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_14.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_15.n_146.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_15.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_16.n_127.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_16.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_17.n_81.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_17.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_18.n_56.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_18.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_19.n_44.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_19.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_1.n_1359.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_1.n_1359.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_20.n_42.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_20.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_21.n_33.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_21.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_22.n_29.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_22.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_23.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_24.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_2.n_1042.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_2.n_1042.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_3.n_988.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_3.n_988.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_4.n_784.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_4.n_784.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_5.n_512.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_5.n_512.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_6.n_474.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_6.n_474.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_7.n_450.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_7.n_450.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_8.n_386.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_8.n_386.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_9.n_327.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_9.n_327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_0.n_4079.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_0.n_4079.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_1.n_413.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_1.n_413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_2.n_306.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_2.n_306.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_3.n_211.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_3.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_4.n_211.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_4.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_5.n_171.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_5.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_6.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_7.n_26.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_7.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_9.n_22.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_9.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_0.n_2803.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_0.n_2803.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_10.n_44.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_10.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_11.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_12.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_1.n_2043.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_1.n_2043.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_2.n_490.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_2.n_490.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_3.n_271.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_3.n_271.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_4.n_200.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_4.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_5.n_176.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_5.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_6.n_88.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_6.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_7.n_61.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_7.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_8.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_9.n_59.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_9.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_0.n_1777.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_0.n_1777.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_10.n_263.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_10.n_263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_11.n_243.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_11.n_243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_12.n_218.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_12.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_13.n_166.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_13.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_14.n_100.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_14.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_15.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_16.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_1.n_834.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_1.n_834.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_2.n_606.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_2.n_606.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_3.n_387.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_3.n_387.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_4.n_382.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_4.n_382.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_5.n_324.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_5.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_6.n_323.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_6.n_323.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_7.n_316.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_7.n_316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_8.n_288.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_8.n_288.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_9.n_282.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_9.n_282.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_0.n_16840.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_0.n_16840.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_1.n_139.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_1.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_2.n_118.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_2.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_0.n_15464.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_0.n_15464.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_10.n_116.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_10.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_11.n_107.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_11.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_12.n_103.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_12.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_13.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_14.n_89.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_14.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_15.n_77.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_15.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_16.n_76.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_16.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_17.n_69.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_17.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_18.n_45.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_18.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_1.n_449.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_1.n_449.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_2.n_283.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_2.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_3.n_209.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_3.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_4.n_201.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_4.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_5.n_179.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_5.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_6.n_178.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_6.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_7.n_149.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_7.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_8.n_133.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_8.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_9.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_0.n_13401.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_0.n_13401.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_10.n_144.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_10.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_11.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_12.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_13.n_90.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_13.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_14.n_84.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_14.n_84.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_16.n_82.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_16.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_17.n_80.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_17.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_18.n_62.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_18.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_19.n_31.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_19.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_1.n_746.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_1.n_746.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_20.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_2.n_728.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_2.n_728.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_3.n_676.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_3.n_676.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_4.n_486.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_4.n_486.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_5.n_243.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_5.n_243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_6.n_230.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_6.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_7.n_206.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_7.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_8.n_176.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_8.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_9.n_155.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_9.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_0.n_713.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_0.n_713.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_10.n_40.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_10.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_1.n_127.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_1.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_2.n_104.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_2.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_3.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_4.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_5.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_6.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_7.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_8.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_9.n_40.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_9.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_0.n_11288.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_0.n_11288.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_10.n_72.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_10.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_11.n_45.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_11.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_12.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_13.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_1.n_2299.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_1.n_2299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_2.n_1254.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_2.n_1254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_3.n_325.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_3.n_325.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_4.n_268.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_4.n_268.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_5.n_263.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_5.n_263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_6.n_194.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_6.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_7.n_154.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_7.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_8.n_104.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_8.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_9.n_90.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_9.n_90.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_10.n_120.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_10.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_11.n_104.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_11.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_12.n_78.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_12.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_13.n_64.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_13.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_14.n_57.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_14.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_15.n_33.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_15.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_16.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_1.n_1591.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_1.n_1591.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_2.n_1298.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_2.n_1298.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_3.n_946.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_3.n_946.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_4.n_857.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_4.n_857.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_5.n_311.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_5.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_6.n_255.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_6.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_7.n_228.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_7.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_8.n_200.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_8.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_9.n_127.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_9.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_0.n_1224.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_0.n_1224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_10.n_112.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_10.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_11.n_104.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_11.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_12.n_103.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_12.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_13.n_98.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_13.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_14.n_84.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_14.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_15.n_82.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_15.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_16.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_17.n_48.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_17.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_18.n_22.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_18.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_1.n_332.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_1.n_332.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_2.n_284.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_2.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_3.n_263.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_3.n_263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_4.n_262.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_4.n_262.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_6.n_164.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_6.n_164.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_25.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_2.n_1025.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_2.n_1025.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_3.n_452.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_3.n_452.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_4.n_392.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_4.n_392.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_5.n_366.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_5.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_6.n_355.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_6.n_355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_7.n_354.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_7.n_354.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_8.n_341.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_8.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_9.n_273.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_9.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_0.n_2888.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_0.n_2888.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_10.n_141.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_10.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_11.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_12.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_1.n_1066.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_1.n_1066.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_2.n_1052.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_2.n_1052.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_3.n_489.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_3.n_489.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_4.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_6.n_234.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_6.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_7.n_168.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_7.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_8.n_164.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_8.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_9.n_145.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_9.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_0.n_1248.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_0.n_1248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_10.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_11.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_12.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_13.n_26.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_13.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_1.n_1210.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_1.n_1210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_2.n_867.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_2.n_867.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_3.n_867.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_3.n_867.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_4.n_331.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_4.n_331.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_5.n_317.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_5.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_6.n_317.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_6.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_7.n_212.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_7.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_8.n_195.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_8.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_9.n_182.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_9.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_0.n_991.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_0.n_991.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_10.n_200.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_10.n_200.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_12.n_166.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_12.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_13.n_148.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_13.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_14.n_143.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_14.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_15.n_114.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_15.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_16.n_107.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_16.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_17.n_104.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_17.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_18.n_81.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_18.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_19.n_59.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_19.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_1.n_900.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_1.n_900.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_2.n_458.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_2.n_458.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_3.n_452.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_3.n_452.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_4.n_304.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_4.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_5.n_249.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_5.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_6.n_217.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_6.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_7.n_214.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_7.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_8.n_209.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_8.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_9.n_207.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_9.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_0.n_885.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_0.n_885.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_10.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_11.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_1.n_162.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_1.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_2.n_125.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_2.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_3.n_124.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_3.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_4.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_5.n_93.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_5.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_6.n_81.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_6.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_7.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_8.n_76.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_8.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_9.n_40.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_9.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_0.n_230.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_0.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_1.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_2.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_3.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_4.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_5.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_7.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_10.n_92.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_10.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_12.n_49.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_12.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_13.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_14.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_1.n_1711.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_1.n_1711.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_2.n_1486.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_2.n_1486.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_3.n_985.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_3.n_985.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_4.n_587.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_4.n_587.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_5.n_488.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_5.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_6.n_428.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_6.n_428.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_7.n_409.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_7.n_409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_8.n_287.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_8.n_287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_9.n_255.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_9.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_10.n_92.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_10.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_12.n_49.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_12.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_13.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_14.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_1.n_1711.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_1.n_1711.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_2.n_1486.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_2.n_1486.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_3.n_985.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_3.n_985.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_4.n_587.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_4.n_587.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_5.n_488.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_5.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_6.n_428.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_6.n_428.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_7.n_409.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_7.n_409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_8.n_287.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_8.n_287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_9.n_255.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_9.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_0.n_9044.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_0.n_9044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_10.n_245.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_10.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_11.n_207.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_11.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_12.n_160.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_12.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_13.n_122.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_13.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_14.n_90.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_14.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_15.n_52.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_15.n_52.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_17.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_1.n_4850.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_1.n_4850.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_2.n_4239.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_2.n_4239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_3.n_2634.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_3.n_2634.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_4.n_1384.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_4.n_1384.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_5.n_1221.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_5.n_1221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_6.n_851.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_6.n_851.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_7.n_792.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_7.n_792.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_8.n_530.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_8.n_530.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_9.n_464.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_9.n_464.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_0.n_405.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_0.n_405.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_10.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_11.n_27.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_11.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_12.n_24.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_12.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_1.n_213.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_1.n_213.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_3.n_63.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_3.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_4.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_5.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_6.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_7.n_33.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_7.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_8.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_9.n_32.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_14.n_31.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_14.n_31.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_8.n_310.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_8.n_310.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_9.n_101.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_9.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_0.n_9743.CWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_0.n_9743.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_1.n_9196.CWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_1.n_9196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_2.n_3052.CWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_2.n_3052.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_3.n_198.CWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_3.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_4.n_140.CWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_4.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_5.n_132.CWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_5.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_6.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_7.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_0.n_2250.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_0.n_2250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_10.n_90.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_10.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_11.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_12.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_13.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_13.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_14.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_15.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_1.n_2155.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_1.n_2155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_2.n_1589.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_2.n_1589.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_3.n_1332.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_3.n_1332.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_4.n_766.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_4.n_766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_5.n_724.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_5.n_724.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_6.n_337.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_6.n_337.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_7.n_281.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_7.n_281.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_10.n_492.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_10.n_492.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_11.n_479.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_11.n_479.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_14.n_377.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_14.n_377.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_16.n_146.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_16.n_146.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_18.n_93.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_18.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_19.n_91.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_19.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_1.n_1216.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_1.n_1216.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_2.n_1055.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_2.n_1055.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_3.n_811.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_3.n_811.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_4.n_692.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_4.n_692.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_5.n_592.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_5.n_592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_6.n_569.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_6.n_569.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_7.n_525.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_7.n_525.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_10.n_90.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_10.n_90.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_9.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_0.n_2215.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_0.n_2215.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_12.n_442.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_12.n_442.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_4.n_692.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_4.n_692.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_2.n_165.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_2.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_3.n_156.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_3.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_4.n_98.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_4.n_98.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_0.n_2270.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_0.n_2270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_1.n_246.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_1.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_2.n_165.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_2.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_3.n_156.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_3.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_4.n_98.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_4.n_98.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_6.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_0.n_1618.CWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_0.n_1618.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_4.n_124.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_4.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_5.n_63.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_5.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_6.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_0.n_1284.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_0.n_1284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_10.n_92.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_10.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_11.n_89.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_11.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_12.n_57.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_12.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_13.n_46.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_13.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_1.n_1136.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_1.n_1136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_2.n_1135.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_2.n_1135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_3.n_1112.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_3.n_1112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_4.n_528.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_4.n_528.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_5.n_412.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_5.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_6.n_374.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_6.n_374.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_7.n_288.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_7.n_288.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_8.n_249.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_8.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_0.n_188.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_0.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_10.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_1.n_104.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_1.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_2.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_3.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_4.n_53.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_4.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_5.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_6.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_7.n_35.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_9.n_27.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_12.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_13.n_71.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_13.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_14.n_57.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_14.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_1.n_277.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_1.n_277.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_2.n_276.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_2.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_3.n_256.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_3.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_4.n_194.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_4.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_5.n_182.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_5.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_6.n_174.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_6.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_7.n_127.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_7.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_8.n_125.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_8.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_9.n_121.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_9.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_0.n_883.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_0.n_883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_10.n_39.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_10.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_1.n_679.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_1.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_2.n_323.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_2.n_323.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_3.n_86.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_3.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_4.n_75.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_4.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_5.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_6.n_60.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_6.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_7.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_8.n_44.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_8.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_9.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_0.n_10989.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_0.n_10989.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_10.n_172.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_10.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_11.n_131.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_11.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_12.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_13.n_107.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_13.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_14.n_101.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_14.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_15.n_99.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_15.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_16.n_86.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_16.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_17.n_86.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_17.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_18.n_46.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_18.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_19.n_39.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_19.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_1.n_2669.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_1.n_2669.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_20.n_35.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_20.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_21.n_33.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_21.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_22.n_27.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_22.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_23.n_24.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_23.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_24.n_24.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_24.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_2.n_2542.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_2.n_2542.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_3.n_1121.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_3.n_1121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_4.n_861.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_4.n_861.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_5.n_413.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_5.n_413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_6.n_386.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_6.n_386.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_7.n_369.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_7.n_369.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_8.n_244.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_8.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_9.n_185.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_9.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_0.n_609.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_0.n_609.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_10.n_70.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_10.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_11.n_66.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_11.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_12.n_58.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_12.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_13.n_57.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_13.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_14.n_57.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_14.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_15.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_16.n_39.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_16.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_17.n_34.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_17.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_18.n_26.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_18.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_1.n_216.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_1.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_2.n_150.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_2.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_3.n_147.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_3.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_4.n_147.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_4.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_5.n_112.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_5.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_6.n_108.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_6.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_7.n_91.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_7.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_8.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_9.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_0.n_2040.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_0.n_2040.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_10.n_340.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_10.n_340.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_11.n_265.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_11.n_265.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_12.n_247.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_12.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_13.n_227.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_13.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_14.n_191.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_14.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_15.n_179.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_15.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_16.n_171.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_16.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_17.n_124.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_17.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_18.n_83.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_18.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_19.n_81.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_19.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_1.n_1908.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_1.n_1908.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_20.n_24.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_20.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_21.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_22.n_20.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_22.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_2.n_1656.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_2.n_1656.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_3.n_1504.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_3.n_1504.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_4.n_1443.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_4.n_1443.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_5.n_749.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_5.n_749.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_6.n_608.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_6.n_608.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_7.n_521.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_7.n_521.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_8.n_519.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_8.n_519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_9.n_398.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_9.n_398.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_0.n_12655.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_0.n_12655.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_1.n_372.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_1.n_372.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_2.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_0.n_1181.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_0.n_1181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_10.n_83.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_10.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_11.n_81.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_11.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_12.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_13.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_14.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_15.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_1.n_1115.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_1.n_1115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_2.n_431.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_2.n_431.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_3.n_309.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_3.n_309.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_4.n_228.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_4.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_5.n_194.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_5.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_6.n_183.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_6.n_183.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_8.n_144.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_8.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_9.n_124.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_9.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_0.n_1849.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_0.n_1849.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_1.n_313.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_1.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_2.n_212.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_2.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_3.n_172.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_3.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_5.n_137.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_5.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_0.n_4274.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_0.n_4274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_1.n_1004.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_1.n_1004.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_2.n_729.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_2.n_729.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_3.n_600.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_3.n_600.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_4.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_5.n_20.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_0.n_6402.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_0.n_6402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_10.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_11.n_31.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_11.n_31.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_9.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_0.n_383.CWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_0.n_383.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_1.n_273.CWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_1.n_273.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_4.n_40.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_6.n_32.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_0.n_2543.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_0.n_2543.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_1.n_301.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_1.n_301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_2.n_275.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_2.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_3.n_238.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_3.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_4.n_229.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_4.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_5.n_213.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_5.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_6.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_7.n_72.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_7.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_8.n_54.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_8.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_9.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_10.n_99.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_10.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_11.n_97.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_11.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_12.n_86.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_12.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_13.n_84.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_13.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_14.n_78.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_14.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_15.n_67.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_15.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_16.n_63.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_16.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_17.n_60.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_17.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_18.n_52.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_18.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_19.n_45.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_19.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_1.n_327.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_1.n_327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_20.n_44.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_20.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_21.n_34.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_21.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_22.n_31.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_22.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_24.n_29.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_24.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_2.n_292.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_2.n_292.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_3.n_227.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_3.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_4.n_174.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_4.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_5.n_124.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_5.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_6.n_123.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_6.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_7.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_8.n_101.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_8.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_9.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_10.n_99.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_10.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_11.n_97.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_11.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_12.n_86.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_12.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_13.n_84.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_13.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_14.n_78.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_14.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_15.n_67.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_15.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_16.n_63.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_16.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_17.n_60.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_17.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_18.n_52.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_18.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_19.n_45.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_19.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_1.n_327.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_1.n_327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_20.n_44.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_20.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_21.n_34.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_21.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_22.n_31.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_22.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_24.n_29.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_24.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_2.n_292.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_2.n_292.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_3.n_227.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_3.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_4.n_174.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_4.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_5.n_124.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_5.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_6.n_123.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_6.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_7.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_8.n_101.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_8.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_9.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_0.n_3884.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_0.n_3884.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_10.n_141.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_10.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_11.n_124.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_11.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_12.n_92.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_12.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_13.n_90.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_13.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_14.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_15.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_1.n_532.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_1.n_532.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_2.n_315.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_2.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_3.n_265.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_3.n_265.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_4.n_233.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_4.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_5.n_227.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_5.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_6.n_212.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_6.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_7.n_179.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_7.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_8.n_167.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_8.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_9.n_158.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_9.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_0.n_3068.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_0.n_3068.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_10.n_243.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_10.n_243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_11.n_237.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_11.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_12.n_154.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_12.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_13.n_60.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_13.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_1.n_1796.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_1.n_1796.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_2.n_1485.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_2.n_1485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_3.n_1169.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_3.n_1169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_4.n_1149.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_4.n_1149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_5.n_904.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_5.n_904.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_6.n_756.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_6.n_756.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_7.n_405.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_7.n_405.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_8.n_336.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_8.n_336.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_0.n_3282.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_0.n_3282.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_10.n_102.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_10.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_11.n_93.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_11.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_12.n_80.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_12.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_13.n_79.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_13.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_14.n_69.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_14.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_15.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_16.n_58.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_16.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_17.n_56.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_17.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_18.n_54.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_18.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_19.n_50.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_19.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_1.n_2357.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_1.n_2357.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_20.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_21.n_31.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_21.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_22.n_29.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_22.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_23.n_24.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_23.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_2.n_798.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_2.n_798.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_3.n_384.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_3.n_384.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_4.n_212.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_4.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_5.n_141.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_5.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_6.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_7.n_116.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_7.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_8.n_105.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_8.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_9.n_104.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_9.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_0.n_629.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_0.n_629.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_10.n_55.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_10.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_11.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_12.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_13.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_1.n_311.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_1.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_2.n_306.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_2.n_306.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_4.n_139.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_4.n_139.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_7.n_108.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_7.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_8.n_102.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_8.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_9.n_92.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_9.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_0.n_1004.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_0.n_1004.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_1.n_538.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_1.n_538.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_2.n_191.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_2.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_3.n_182.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_3.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_4.n_168.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_4.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_5.n_154.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_5.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_6.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_7.n_130.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_7.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_8.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_9.n_54.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_9.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_0.n_376.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_0.n_376.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_10.n_67.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_10.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_11.n_66.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_11.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_12.n_65.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_12.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_13.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_14.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_15.n_34.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_15.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_16.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_1.n_154.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_1.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_2.n_141.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_2.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_3.n_141.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_3.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_4.n_124.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_4.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_5.n_112.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_5.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_6.n_95.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_6.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_7.n_95.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_7.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_8.n_73.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_8.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_9.n_67.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_9.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HEK526-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HEK526-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_0.n_1908.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_0.n_1908.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_10.n_256.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_10.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_11.n_247.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_11.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_12.n_240.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_12.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_13.n_188.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_13.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_14.n_177.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_14.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_15.n_149.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_15.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_16.n_137.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_16.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_17.n_130.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_17.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_18.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_19.n_45.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_19.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_1.n_975.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_1.n_975.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_20.n_34.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_20.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_21.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_2.n_634.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_2.n_634.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_3.n_446.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_3.n_446.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_4.n_428.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_4.n_428.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_5.n_368.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_5.n_368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_6.n_359.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_6.n_359.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_7.n_353.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_7.n_353.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_8.n_338.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_8.n_338.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_9.n_309.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_9.n_309.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_0.n_2170.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_0.n_2170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_10.n_190.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_10.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_11.n_104.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_11.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_12.n_73.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_12.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_13.n_69.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_13.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_14.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_15.n_64.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_15.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_16.n_59.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_16.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_17.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_18.n_36.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_18.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_19.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_1.n_2101.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_1.n_2101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_20.n_34.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_20.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_21.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_22.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_2.n_1219.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_2.n_1219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_3.n_773.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_3.n_773.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_4.n_769.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_4.n_769.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_5.n_625.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_5.n_625.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_6.n_412.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_6.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_7.n_384.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_7.n_384.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_8.n_371.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_8.n_371.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_9.n_330.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_9.n_330.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_0.n_2170.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_0.n_2170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_10.n_190.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_10.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_11.n_104.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_11.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_12.n_73.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_12.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_13.n_69.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_13.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_14.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_15.n_64.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_15.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_16.n_59.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_16.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_17.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_18.n_36.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_18.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_19.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_1.n_2101.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_1.n_2101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_20.n_34.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_20.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_21.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_22.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_2.n_1219.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_2.n_1219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_3.n_773.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_3.n_773.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_4.n_769.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_4.n_769.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_5.n_625.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_5.n_625.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_6.n_412.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_6.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_7.n_384.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_7.n_384.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_8.n_371.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_8.n_371.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_9.n_330.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_9.n_330.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_0.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_10.n_56.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_10.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_11.n_52.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_11.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_12.n_52.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_12.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_13.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_14.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_15.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_16.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_1.n_163.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_1.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_2.n_117.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_2.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_3.n_112.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_3.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_4.n_104.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_4.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_5.n_98.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_5.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_6.n_97.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_6.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_7.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_8.n_79.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_8.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_9.n_59.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_9.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_0.n_2508.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_0.n_2508.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_10.n_117.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_10.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_11.n_116.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_11.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_12.n_101.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_12.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_13.n_76.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_13.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_14.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_15.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_1.n_2112.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_1.n_2112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_2.n_1511.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_2.n_1511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_3.n_1429.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_3.n_1429.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_4.n_571.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_4.n_571.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_5.n_507.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_5.n_507.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_6.n_366.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_6.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_7.n_247.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_7.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_8.n_162.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_8.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_9.n_155.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_9.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_0.n_224.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_0.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_10.n_67.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_10.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_11.n_65.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_11.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_12.n_62.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_12.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_13.n_56.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_13.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_14.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_15.n_36.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_15.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_16.n_31.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_16.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_17.n_31.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_17.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_18.n_28.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_18.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_19.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_1.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_20.n_25.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_20.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_21.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_22.n_20.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_22.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_2.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_3.n_100.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_3.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_4.n_95.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_4.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_5.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_6.n_75.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_6.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_7.n_74.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_7.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_8.n_72.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_8.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_9.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_0.n_2825.CWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_0.n_2825.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_1.n_334.CWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_1.n_334.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_2.n_106.CWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_2.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_3.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_0.n_2616.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_0.n_2616.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_10.n_60.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_10.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_11.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_12.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_13.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_1.n_224.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_1.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_2.n_189.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_2.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_3.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_4.n_167.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_4.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_5.n_125.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_5.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_6.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_7.n_94.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_7.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_8.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_9.n_70.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_9.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_0.n_590.CWM.meme motif-alignments-all-vs-all/ZNF214/ZNF214-201-vs-ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_0.n_590.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_1.n_271.CWM.meme motif-alignments-all-vs-all/ZNF214/ZNF214-201-vs-ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_1.n_271.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_2.n_258.CWM.meme motif-alignments-all-vs-all/ZNF214/ZNF214-201-vs-ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_2.n_258.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_0.n_4115.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_0.n_4115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_10.n_174.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_10.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_11.n_171.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_11.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_12.n_167.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_12.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_13.n_156.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_13.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_14.n_152.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_14.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_15.n_92.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_15.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_16.n_81.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_16.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_17.n_77.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_17.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_18.n_69.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_18.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_19.n_67.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_19.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_1.n_2167.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_1.n_2167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_20.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_21.n_49.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_21.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_22.n_42.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_22.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_23.n_42.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_23.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_24.n_37.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_24.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_25.n_33.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_25.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_26.n_31.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_26.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_27.n_31.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_27.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_28.n_28.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_28.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_29.n_27.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_29.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_2.n_2125.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_2.n_2125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_3.n_1648.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_3.n_1648.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_4.n_1388.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_4.n_1388.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_5.n_1022.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_5.n_1022.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_6.n_1011.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_6.n_1011.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_7.n_563.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_7.n_563.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_8.n_351.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_8.n_351.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_9.n_265.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_9.n_265.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_0.n_8301.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_0.n_8301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_10.n_408.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_10.n_408.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_11.n_388.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_11.n_388.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_12.n_382.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_12.n_382.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_13.n_299.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_13.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_14.n_282.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_14.n_282.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_15.n_212.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_15.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_16.n_196.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_16.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_17.n_158.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_17.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_18.n_134.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_18.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_19.n_115.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_19.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_1.n_3255.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_1.n_3255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_20.n_97.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_20.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_21.n_38.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_21.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_22.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_23.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_24.n_24.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_24.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_2.n_2573.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_2.n_2573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_3.n_1857.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_3.n_1857.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_4.n_1747.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_4.n_1747.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_5.n_1643.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_5.n_1643.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_6.n_1040.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_6.n_1040.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_7.n_978.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_7.n_978.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_8.n_716.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_8.n_716.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_9.n_686.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_9.n_686.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_0.n_118.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_0.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_10.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_1.n_36.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_1.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_3.n_29.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_3.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_5.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_6.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_7.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_8.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_0.n_3894.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_0.n_3894.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_10.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_11.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_12.n_38.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_12.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_13.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_14.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_15.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_1.n_1947.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_1.n_1947.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_2.n_1897.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_2.n_1897.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_3.n_1449.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_3.n_1449.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_4.n_1072.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_4.n_1072.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_5.n_1034.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_5.n_1034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_6.n_838.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_6.n_838.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_7.n_611.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_7.n_611.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_8.n_394.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_8.n_394.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_9.n_273.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_9.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_0.n_5455.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_0.n_5455.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_10.n_499.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_10.n_499.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_11.n_474.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_11.n_474.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_12.n_386.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_12.n_386.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_13.n_372.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_13.n_372.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_14.n_367.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_14.n_367.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_15.n_339.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_15.n_339.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_16.n_328.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_16.n_328.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_17.n_252.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_17.n_252.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_18.n_249.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_18.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_19.n_235.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_19.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_1.n_4007.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_1.n_4007.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_20.n_171.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_20.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_21.n_116.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_21.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_22.n_45.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_22.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_23.n_43.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_23.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_2.n_1979.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_2.n_1979.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_3.n_1801.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_3.n_1801.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_4.n_1755.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_4.n_1755.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_5.n_1592.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_5.n_1592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_6.n_1078.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_6.n_1078.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_7.n_836.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_7.n_836.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_8.n_775.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_8.n_775.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_9.n_718.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_9.n_718.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_0.n_1278.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_0.n_1278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_1.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_3.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_4.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_0.n_7781.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_0.n_7781.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_10.n_173.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_10.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_11.n_140.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_11.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_12.n_132.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_12.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_13.n_102.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_13.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_14.n_81.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_14.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_15.n_71.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_15.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_16.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_17.n_34.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_17.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_1.n_3489.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_1.n_3489.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_2.n_3119.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_2.n_3119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_3.n_2940.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_3.n_2940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_4.n_2442.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_4.n_2442.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_5.n_1828.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_5.n_1828.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_6.n_931.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_6.n_931.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_7.n_596.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_7.n_596.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_8.n_296.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_8.n_296.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_9.n_274.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_9.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_0.n_7781.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_0.n_7781.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_10.n_173.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_10.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_11.n_140.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_11.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_12.n_132.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_12.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_13.n_102.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_13.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_14.n_81.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_14.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_15.n_71.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_15.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_16.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_17.n_34.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_17.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_1.n_3489.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_1.n_3489.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_2.n_3119.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_2.n_3119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_3.n_2940.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_3.n_2940.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_4.n_2442.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_4.n_2442.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_5.n_1828.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_5.n_1828.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_6.n_931.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_6.n_931.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_7.n_596.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_7.n_596.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_8.n_296.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_8.n_296.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_9.n_274.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_9.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_0.n_1021.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_0.n_1021.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_1.n_121.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_1.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_2.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_3.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_4.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_5.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_6.n_56.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_6.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_7.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_8.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_0.n_515.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_0.n_515.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_1.n_333.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_1.n_333.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_2.n_272.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_2.n_272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_3.n_194.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_3.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_4.n_180.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_4.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_5.n_156.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_5.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_6.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_7.n_80.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_7.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_8.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_0.n_98.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_0.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_10.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_11.n_67.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_11.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_12.n_65.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_12.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_13.n_59.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_13.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_14.n_57.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_14.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_15.n_56.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_15.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_16.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_17.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_18.n_53.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_18.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_19.n_52.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_19.n_52.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_23.n_152.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_23.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_24.n_122.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_24.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_25.n_50.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_25.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_26.n_37.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_26.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_27.n_35.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_27.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_28.n_31.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_28.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_29.n_24.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_29.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_2.n_4018.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_2.n_4018.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_30.n_21.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_30.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_3.n_3142.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_3.n_3142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_4.n_2864.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_4.n_2864.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_5.n_2623.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_5.n_2623.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_6.n_2125.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_6.n_2125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_7.n_2024.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_7.n_2024.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_8.n_1203.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_8.n_1203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_9.n_1084.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_9.n_1084.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_0.n_1777.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_0.n_1777.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_10.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_1.n_1514.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_1.n_1514.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_2.n_1498.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_2.n_1498.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_3.n_636.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_3.n_636.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_4.n_293.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_4.n_293.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_5.n_284.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_5.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_6.n_257.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_6.n_257.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_7.n_254.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_7.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_8.n_73.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_8.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_9.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_9.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585B-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_0.n_5269.CWM.meme motif-alignments-all-vs-all/ZNF585B/ZNF585B-205-vs-ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_0.n_5269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585B-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_1.n_1141.CWM.meme motif-alignments-all-vs-all/ZNF585B/ZNF585B-205-vs-ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_1.n_1141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585B-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all/ZNF585B/ZNF585B-205-vs-ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_2.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_0.n_229.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_0.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_1.n_189.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_1.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_2.n_177.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_2.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_3.n_164.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_3.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_4.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_5.n_68.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_5.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_6.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_7.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_0.n_620.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_0.n_620.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_10.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_11.n_84.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_11.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_12.n_83.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_12.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_13.n_75.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_13.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_14.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_15.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_16.n_31.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_16.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_17.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_18.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_1.n_303.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_1.n_303.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_2.n_136.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_2.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_3.n_121.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_3.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_4.n_115.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_4.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_5.n_112.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_5.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_6.n_111.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_6.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_8.n_105.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_8.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_9.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_0.n_4281.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_0.n_4281.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_1.n_2044.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_1.n_2044.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_2.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_3.n_643.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_3.n_643.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_4.n_133.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_4.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_5.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_6.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_7.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_8.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_0.n_2425.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_0.n_2425.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_10.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_10.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_11.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_11.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_12.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_12.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_13.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_14.n_33.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_14.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_15.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_16.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_16.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_1.n_1374.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_1.n_1374.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_2.n_1271.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_2.n_1271.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_3.n_846.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_3.n_846.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_4.n_429.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_4.n_429.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_5.n_178.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_5.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_6.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_7.n_126.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_7.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_8.n_122.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_8.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_9.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_0.n_7514.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_0.n_7514.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_10.n_189.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_10.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_11.n_178.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_11.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_12.n_169.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_12.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_13.n_158.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_13.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_14.n_158.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_14.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_15.n_139.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_15.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_16.n_67.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_16.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_17.n_62.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_17.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_18.n_32.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_18.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_19.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_1.n_3375.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_1.n_3375.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_2.n_2165.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_2.n_2165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_3.n_1425.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_3.n_1425.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_4.n_1240.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_4.n_1240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_5.n_922.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_5.n_922.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_6.n_507.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_6.n_507.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_7.n_376.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_7.n_376.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_8.n_238.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_8.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_9.n_219.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_9.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_0.n_9396.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_0.n_9396.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_10.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_11.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_12.n_60.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_12.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_13.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_14.n_53.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_14.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_15.n_51.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_15.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_16.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_17.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_18.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_1.n_7071.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_1.n_7071.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_20.n_30.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_20.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_21.n_29.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_21.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_22.n_29.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_22.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_23.n_27.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_23.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_24.n_22.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_24.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_25.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_2.n_2454.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_2.n_2454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_3.n_1390.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_3.n_1390.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_4.n_1142.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_4.n_1142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_5.n_397.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_5.n_397.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_6.n_388.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_6.n_388.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_7.n_200.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_7.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_8.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_9.n_96.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_9.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_0.n_1810.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_1.n_698.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_1.n_698.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_2.n_399.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_2.n_399.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_3.n_389.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_3.n_389.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_4.n_378.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_4.n_378.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_5.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_6.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_7.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_8.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_9.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_0.n_3667.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_0.n_3667.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_10.n_378.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_10.n_378.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_11.n_362.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_11.n_362.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_12.n_332.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_12.n_332.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_13.n_312.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_13.n_312.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_14.n_255.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_14.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_15.n_242.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_15.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_16.n_210.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_16.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_17.n_183.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_17.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_18.n_139.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_18.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_19.n_102.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_19.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_1.n_3546.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_1.n_3546.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_20.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_21.n_40.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_21.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_22.n_25.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_22.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_23.n_20.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_23.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_2.n_3426.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_2.n_3426.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_3.n_1769.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_3.n_1769.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_4.n_1289.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_4.n_1289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_5.n_824.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_5.n_824.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_6.n_803.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_6.n_803.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_7.n_734.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_7.n_734.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_8.n_622.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_8.n_622.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_9.n_497.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_9.n_497.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_0.n_1615.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_0.n_1615.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_10.n_86.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_10.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_11.n_66.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_11.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_12.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_1.n_1129.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_1.n_1129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_2.n_455.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_2.n_455.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_3.n_349.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_3.n_349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_4.n_329.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_4.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_5.n_312.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_5.n_312.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_6.n_284.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_6.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_7.n_269.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_7.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_8.n_264.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_8.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_9.n_161.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_9.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_17.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_1.n_1470.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_1.n_1470.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_2.n_1101.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_2.n_1101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_3.n_666.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_3.n_666.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_4.n_480.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_4.n_480.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_5.n_380.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_5.n_380.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_6.n_356.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_6.n_356.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_7.n_338.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_7.n_338.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_8.n_328.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_8.n_328.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_9.n_179.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_9.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_0.n_1618.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_0.n_1618.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_10.n_198.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_10.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_11.n_190.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_11.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_12.n_132.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_12.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_13.n_114.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_13.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_14.n_102.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_14.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_15.n_91.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_15.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_16.n_66.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_16.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_17.n_33.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_17.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_18.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_1.n_1370.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_1.n_1370.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_2.n_1016.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_2.n_1016.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_3.n_727.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_3.n_727.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_4.n_399.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_4.n_399.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_5.n_399.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_5.n_399.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_6.n_297.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_6.n_297.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_7.n_247.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_7.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_8.n_242.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_8.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_9.n_201.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_9.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_0.n_8412.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_0.n_8412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_10.n_235.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_10.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_11.n_104.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_11.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_12.n_77.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_12.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_1.n_5833.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_1.n_5833.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_2.n_4596.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_2.n_4596.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_3.n_2223.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_3.n_2223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_4.n_784.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_4.n_784.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_5.n_757.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_5.n_757.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_6.n_546.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_6.n_546.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_7.n_466.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_7.n_466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_8.n_351.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_8.n_351.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_9.n_315.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_9.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_0.n_15291.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_0.n_15291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_10.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_11.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_12.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_1.n_2944.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_1.n_2944.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_2.n_1738.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_2.n_1738.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_3.n_703.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_3.n_703.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_4.n_505.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_4.n_505.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_5.n_341.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_5.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_6.n_305.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_6.n_305.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_7.n_161.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_7.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_8.n_156.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_8.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_9.n_114.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_9.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_0.n_2890.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_0.n_2890.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_10.n_160.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_10.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_11.n_28.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_11.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_1.n_1233.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_1.n_1233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_2.n_254.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_2.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_3.n_253.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_3.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_4.n_238.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_4.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_5.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_6.n_196.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_6.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_7.n_182.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_7.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_8.n_174.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_8.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_9.n_171.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_9.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_0.n_3154.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_0.n_3154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_1.n_1083.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_1.n_1083.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_2.n_936.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_2.n_936.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_3.n_249.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_3.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_4.n_183.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_4.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_5.n_141.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_5.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_6.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_7.n_124.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_7.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_8.n_90.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_8.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_9.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_0.n_2115.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_0.n_2115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_10.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_11.n_59.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_11.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_12.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_13.n_57.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_13.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_14.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_1.n_334.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_1.n_334.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_2.n_244.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_2.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_3.n_234.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_3.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_4.n_195.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_4.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_5.n_184.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_5.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_6.n_130.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_6.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_7.n_129.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_7.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_8.n_92.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_8.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_9.n_82.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_9.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_0.n_3156.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_0.n_3156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_1.n_208.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_1.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_2.n_149.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_2.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_3.n_141.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_3.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_4.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_5.n_91.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_5.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_6.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_7.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_0.n_972.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_0.n_972.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_10.n_84.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_10.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_11.n_62.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_11.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_12.n_57.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_12.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_13.n_50.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_13.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_14.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_15.n_36.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_15.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_16.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_1.n_554.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_1.n_554.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_2.n_346.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_2.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_3.n_322.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_3.n_322.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_4.n_236.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_4.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_5.n_168.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_5.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_6.n_148.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_6.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_7.n_143.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_7.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_8.n_124.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_8.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_9.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_0.n_310.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_0.n_310.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_1.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_2.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_3.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_4.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_5.n_33.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_5.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_6.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_7.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_0.n_319.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_0.n_319.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_10.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_11.n_31.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_11.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_12.n_28.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_12.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_13.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_14.n_24.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_14.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_16.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_17.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_18.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_1.n_184.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_1.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_2.n_143.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_2.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_3.n_105.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_3.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_4.n_80.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_4.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_5.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_6.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_7.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_8.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_9.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_0.n_276.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_0.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_1.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_2.n_81.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_2.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_3.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_4.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_5.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_6.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_7.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_0.n_1270.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_0.n_1270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_10.n_244.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_10.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_11.n_237.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_11.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_12.n_171.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_12.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_13.n_163.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_13.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_14.n_140.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_14.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_15.n_121.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_15.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_16.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_17.n_111.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_17.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_18.n_102.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_18.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_19.n_96.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_19.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_1.n_550.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_1.n_550.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_20.n_95.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_20.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_21.n_85.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_21.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_22.n_68.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_22.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_23.n_58.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_23.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_24.n_54.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_24.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_25.n_48.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_25.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_26.n_31.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_26.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_2.n_545.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_2.n_545.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_3.n_436.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_3.n_436.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_4.n_414.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_4.n_414.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_5.n_399.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_5.n_399.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_6.n_378.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_6.n_378.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_7.n_319.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_7.n_319.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_8.n_282.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_8.n_282.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_9.n_280.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_9.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_0.n_6133.CWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_0.n_6133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_1.n_5926.CWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_1.n_5926.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_2.n_246.CWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_2.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_3.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_4.n_94.CWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_4.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_5.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_6.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_0.n_133.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_0.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_1.n_126.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_1.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_2.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_3.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_4.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_5.n_50.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_5.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_6.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_7.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_8.n_40.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_8.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_9.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_0.n_6522.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_0.n_6522.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_1.n_4915.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_1.n_4915.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_2.n_2085.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_2.n_2085.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_3.n_1244.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_3.n_1244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_4.n_272.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_4.n_272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_5.n_172.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_5.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_6.n_171.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_6.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_7.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_8.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_9.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_0.n_953.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_0.n_953.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_10.n_71.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_10.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_11.n_67.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_11.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_12.n_65.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_12.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_13.n_63.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_13.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_14.n_58.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_14.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_15.n_53.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_15.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_16.n_51.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_16.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_17.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_18.n_24.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_18.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_19.n_20.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_19.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_1.n_392.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_1.n_392.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_2.n_158.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_2.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_3.n_121.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_3.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_4.n_117.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_4.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_5.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_6.n_96.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_6.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_7.n_87.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_7.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_8.n_86.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_8.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_9.n_71.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_9.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_1.n_169.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_1.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_2.n_101.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_2.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_3.n_85.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_3.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_4.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_1.n_169.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_1.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_2.n_101.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_2.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_3.n_85.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_3.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_4.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_0.n_1595.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_0.n_1595.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_10.n_164.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_10.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_11.n_162.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_11.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_12.n_143.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_12.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_13.n_127.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_13.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_14.n_97.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_14.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_15.n_87.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_15.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_16.n_85.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_16.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_17.n_75.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_17.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_18.n_71.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_18.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_19.n_60.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_19.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_1.n_1084.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_1.n_1084.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_20.n_34.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_20.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_21.n_28.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_21.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_2.n_647.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_2.n_647.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_3.n_380.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_3.n_380.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_4.n_233.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_4.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_5.n_224.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_5.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_6.n_205.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_6.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_7.n_188.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_7.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_8.n_169.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_8.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_9.n_167.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_9.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_0.n_1103.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_0.n_1103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_1.n_989.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_1.n_989.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_2.n_875.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_2.n_875.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_3.n_861.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_3.n_861.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_4.n_304.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_4.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_5.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_6.n_150.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_6.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_8.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_0.n_1165.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_0.n_1165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_10.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_11.n_61.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_11.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_12.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_13.n_57.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_13.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_14.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_15.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_16.n_43.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_16.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_17.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_18.n_28.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_18.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_19.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_1.n_606.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_1.n_606.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_20.n_26.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_20.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_2.n_590.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_2.n_590.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_3.n_214.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_3.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_4.n_205.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_4.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_5.n_203.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_5.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_6.n_194.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_6.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_7.n_179.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_7.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_8.n_118.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_8.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_9.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_0.n_2464.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_0.n_2464.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_10.n_289.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_10.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_11.n_277.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_11.n_277.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_12.n_262.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_12.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_13.n_162.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_13.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_14.n_132.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_14.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_15.n_110.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_15.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_16.n_99.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_16.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_17.n_80.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_17.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_18.n_75.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_18.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_19.n_63.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_19.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_1.n_1625.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_1.n_1625.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_20.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_2.n_1428.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_2.n_1428.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_3.n_1382.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_3.n_1382.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_4.n_806.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_4.n_806.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_5.n_607.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_5.n_607.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_6.n_513.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_6.n_513.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_8.n_423.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_8.n_423.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_9.n_303.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_9.n_303.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_0.n_213.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_0.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_10.n_68.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_10.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_11.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_1.n_183.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_1.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_2.n_167.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_2.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_3.n_149.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_3.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_4.n_146.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_4.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_5.n_132.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_5.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_6.n_125.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_6.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_7.n_85.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_7.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_8.n_79.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_8.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_9.n_71.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_9.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_0.n_1203.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_0.n_1203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_10.n_50.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_10.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_11.n_46.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_11.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_1.n_1193.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_1.n_1193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_2.n_910.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_2.n_910.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_3.n_479.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_3.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_4.n_303.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_4.n_303.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_5.n_233.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_5.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_6.n_218.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_6.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_7.n_170.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_7.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_8.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_9.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_0.n_1250.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_0.n_1250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_1.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_0.n_611.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_0.n_611.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_10.n_217.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_10.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_11.n_215.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_11.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_12.n_210.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_12.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_13.n_173.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_13.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_14.n_150.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_14.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_15.n_142.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_15.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_16.n_124.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_16.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_17.n_121.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_17.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_18.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_19.n_75.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_19.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_1.n_388.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_1.n_388.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_20.n_73.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_20.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_21.n_60.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_21.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_22.n_52.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_22.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_23.n_48.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_23.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_2.n_387.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_2.n_387.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_3.n_381.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_3.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_4.n_319.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_4.n_319.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_5.n_305.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_5.n_305.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_6.n_275.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_6.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_7.n_267.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_7.n_267.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_8.n_256.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_8.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_9.n_246.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_9.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_0.n_621.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_0.n_621.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_10.n_92.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_10.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_11.n_87.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_11.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_12.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_13.n_83.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_13.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_14.n_73.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_14.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_15.n_64.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_15.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_16.n_61.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_16.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_17.n_59.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_17.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_18.n_55.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_18.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_19.n_45.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_19.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_1.n_407.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_1.n_407.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_20.n_25.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_20.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_21.n_24.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_21.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_22.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_2.n_294.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_2.n_294.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_3.n_206.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_3.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_4.n_172.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_4.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_5.n_135.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_5.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_6.n_122.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_6.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_7.n_107.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_7.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_8.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_9.n_94.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_9.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_0.n_46.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_0.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_1.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_0.n_3012.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_0.n_3012.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_10.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_11.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_12.n_30.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_12.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_13.n_30.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_13.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_1.n_1578.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_1.n_1578.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_2.n_1271.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_2.n_1271.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_3.n_708.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_3.n_708.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_4.n_419.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_4.n_419.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_5.n_182.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_5.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_6.n_173.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_6.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_7.n_135.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_7.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_8.n_129.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_8.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_9.n_94.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_9.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_0.n_475.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_0.n_475.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_11.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_1.n_157.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_1.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_2.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_3.n_107.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_3.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_4.n_72.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_4.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_5.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_6.n_62.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_6.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_7.n_47.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_7.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_8.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_9.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_0.n_1820.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_0.n_1820.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_10.n_47.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_10.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_11.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_12.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_13.n_27.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_13.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_14.n_24.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_14.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_1.n_1732.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_1.n_1732.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_5.n_103.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_5.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_6.n_101.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_6.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_7.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_8.n_90.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_8.n_90.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_0.n_270.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_0.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_1.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_2.n_101.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_2.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_3.n_86.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_3.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_4.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_5.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_0.n_2506.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_0.n_2506.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_10.n_97.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_10.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_11.n_97.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_11.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_12.n_83.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_12.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_13.n_82.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_13.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_14.n_71.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_14.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_15.n_60.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_15.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_16.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_17.n_36.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_17.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_18.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_1.n_1573.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_1.n_1573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_2.n_285.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_2.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_3.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_4.n_262.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_4.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_5.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_6.n_176.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_6.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_7.n_142.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_7.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_8.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_9.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_0.n_12336.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_0.n_12336.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_10.n_91.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_10.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_11.n_80.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_11.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_12.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_14.n_24.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_14.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_15.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_1.n_4754.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_1.n_4754.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_2.n_2079.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_2.n_2079.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_3.n_602.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_3.n_602.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_4.n_516.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_4.n_516.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_5.n_492.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_5.n_492.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_6.n_288.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_6.n_288.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_7.n_214.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_7.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_8.n_151.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_8.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_9.n_101.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_9.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_0.n_14799.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_0.n_14799.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_10.n_143.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_10.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_11.n_139.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_11.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_12.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_13.n_112.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_13.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_14.n_109.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_14.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_15.n_107.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_15.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_16.n_64.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_16.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_17.n_43.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_17.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_18.n_37.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_18.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_19.n_33.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_19.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_1.n_1035.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_1.n_1035.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_20.n_31.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_20.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_21.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_22.n_27.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_22.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_23.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_2.n_748.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_2.n_748.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_3.n_438.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_3.n_438.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_4.n_419.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_4.n_419.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_5.n_260.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_5.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_6.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_7.n_223.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_7.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_8.n_195.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_8.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_9.n_160.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_9.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_12.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_13.n_78.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_13.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_14.n_58.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_14.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_15.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_16.n_41.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_16.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_17.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_1.n_2763.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_1.n_2763.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_2.n_2172.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_2.n_2172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_3.n_1811.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_3.n_1811.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_4.n_939.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_4.n_939.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_5.n_415.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_5.n_415.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_6.n_358.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_6.n_358.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_7.n_310.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_7.n_310.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_8.n_296.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_8.n_296.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_9.n_266.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_9.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_0.n_4509.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_0.n_4509.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_10.n_134.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_10.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_11.n_84.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_11.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_12.n_74.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_12.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_13.n_61.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_13.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_14.n_59.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_14.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_15.n_52.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_15.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_16.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_17.n_34.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_17.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_18.n_31.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_18.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_19.n_31.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_19.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_1.n_1908.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_1.n_1908.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_2.n_640.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_2.n_640.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_3.n_416.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_3.n_416.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_4.n_416.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_4.n_416.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_5.n_284.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_5.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_6.n_220.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_6.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_7.n_215.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_7.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_8.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_9.n_164.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_9.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_0.n_3526.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_0.n_3526.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_10.n_92.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_10.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_11.n_49.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_11.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_12.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_13.n_43.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_13.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_14.n_36.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_14.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_15.n_34.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_15.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_16.n_29.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_16.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_17.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_1.n_1439.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_1.n_1439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_2.n_1100.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_2.n_1100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_3.n_229.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_3.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_4.n_200.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_4.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_5.n_193.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_5.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_6.n_184.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_6.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_7.n_178.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_7.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_8.n_177.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_8.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_9.n_117.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_9.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_0.n_657.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_0.n_657.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_10.n_95.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_10.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_11.n_76.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_11.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_12.n_65.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_12.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_13.n_64.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_13.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_14.n_48.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_14.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_16.n_29.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_16.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_1.n_254.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_1.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_2.n_187.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_2.n_187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_3.n_165.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_3.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_4.n_150.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_4.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_5.n_150.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_5.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_6.n_141.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_6.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_7.n_109.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_7.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_8.n_108.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_8.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_9.n_99.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_9.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_0.n_6347.CWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_0.n_6347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_1.n_251.CWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_1.n_251.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_2.n_167.CWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_2.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_3.n_156.CWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_3.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_4.n_96.CWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_4.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_5.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_6.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_0.n_881.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_0.n_881.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_10.n_134.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_10.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_11.n_132.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_11.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_12.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_13.n_118.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_13.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_14.n_102.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_14.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_15.n_88.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_15.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_16.n_88.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_16.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_17.n_79.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_17.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_18.n_68.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_18.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_19.n_56.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_19.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_1.n_388.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_1.n_388.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_20.n_55.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_20.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_2.n_276.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_2.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_3.n_226.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_3.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_4.n_222.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_4.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_5.n_218.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_5.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_6.n_207.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_6.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_7.n_179.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_7.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_8.n_163.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_8.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_9.n_153.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_9.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_1.n_160.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_1.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_5.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_0.n_881.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_0.n_881.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_10.n_134.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_10.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_11.n_132.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_11.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_12.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_13.n_118.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_13.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_14.n_102.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_14.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_15.n_88.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_15.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_16.n_88.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_16.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_17.n_79.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_17.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_18.n_68.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_18.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_19.n_56.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_19.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_1.n_388.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_1.n_388.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_20.n_55.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_20.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_2.n_276.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_2.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_3.n_226.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_3.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_4.n_222.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_4.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_5.n_218.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_5.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_6.n_207.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_6.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_7.n_179.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_7.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_8.n_163.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_8.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_9.n_153.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_9.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_1.n_160.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_1.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_5.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_0.n_1606.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_0.n_1606.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_10.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_11.n_79.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_11.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_12.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_13.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_14.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_15.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_16.n_38.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_16.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_17.n_37.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_17.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_18.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_1.n_1039.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_1.n_1039.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_2.n_436.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_2.n_436.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_3.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_4.n_127.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_4.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_5.n_119.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_5.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_6.n_92.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_6.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_7.n_91.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_7.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_8.n_90.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_8.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_9.n_87.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_9.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_0.n_510.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_0.n_510.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_10.n_124.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_10.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_11.n_110.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_11.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_12.n_86.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_12.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_13.n_57.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_13.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_14.n_49.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_14.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_15.n_43.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_15.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_16.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_17.n_31.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_17.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_18.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_1.n_441.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_1.n_441.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_2.n_436.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_2.n_436.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_3.n_297.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_3.n_297.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_4.n_296.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_4.n_296.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_5.n_294.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_5.n_294.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_6.n_235.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_6.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_7.n_218.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_7.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_8.n_204.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_8.n_204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_9.n_203.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_9.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_0.n_461.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_0.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_10.n_105.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_10.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_11.n_85.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_11.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_12.n_33.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_12.n_33.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_2.n_316.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_2.n_316.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_5.n_153.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_5.n_153.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_7.n_133.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_7.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_8.n_127.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_8.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_9.n_127.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_9.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_2.n_1757.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_2.n_1757.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_3.n_1018.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_3.n_1018.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_4.n_991.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_4.n_991.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_5.n_568.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_5.n_568.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_6.n_556.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_6.n_556.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_7.n_464.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_7.n_464.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_8.n_311.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_8.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_9.n_218.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_9.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_0.n_760.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_0.n_760.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_10.n_272.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_10.n_272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_11.n_260.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_11.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_12.n_254.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_12.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_13.n_161.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_13.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_14.n_123.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_14.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_15.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_1.n_752.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_1.n_752.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_2.n_457.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_2.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_3.n_355.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_3.n_355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_4.n_339.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_4.n_339.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_5.n_322.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_5.n_322.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_6.n_316.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_6.n_316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_7.n_312.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_7.n_312.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_8.n_299.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_8.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_9.n_290.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_9.n_290.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_0.n_6289.CWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_0.n_6289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_1.n_178.CWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_1.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_2.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_3.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_4.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_0.n_1045.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_0.n_1045.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_10.n_153.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_10.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_11.n_146.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_11.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_12.n_142.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_12.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_13.n_132.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_13.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_14.n_126.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_14.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_15.n_114.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_15.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_16.n_109.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_16.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_17.n_86.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_17.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_18.n_83.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_18.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_19.n_78.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_19.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_1.n_925.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_1.n_925.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_20.n_68.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_20.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_21.n_68.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_21.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_22.n_66.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_22.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_23.n_23.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_4.n_280.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_4.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_5.n_233.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_5.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_6.n_229.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_6.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_7.n_210.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_7.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_8.n_182.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_8.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_9.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.CWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_0.n_333.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_0.n_333.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_1.n_262.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_1.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_2.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_3.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_0.n_560.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_0.n_560.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_10.n_61.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_10.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_11.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_12.n_55.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_12.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_13.n_49.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_13.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_14.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_15.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_1.n_425.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_1.n_425.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_2.n_287.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_2.n_287.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_5.n_96.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_5.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_6.n_95.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_6.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_8.n_81.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_8.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_9.n_63.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_9.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_0.n_3450.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_0.n_3450.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_10.n_114.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_10.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_12.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_13.n_86.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_13.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_14.n_82.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_14.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_15.n_38.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_15.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_1.n_2036.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_1.n_2036.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_2.n_1210.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_2.n_1210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_3.n_598.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_3.n_598.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_4.n_507.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_4.n_507.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_5.n_425.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_5.n_425.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_6.n_407.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_6.n_407.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_8.n_240.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_8.n_240.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_0.n_3450.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_0.n_3450.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_10.n_114.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_10.n_114.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_5.n_425.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_5.n_425.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_6.n_407.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_6.n_407.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_7.n_370.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_7.n_370.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_8.n_240.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_8.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_9.n_162.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_9.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_0.n_2891.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_0.n_2891.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_10.n_106.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_10.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_11.n_72.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_11.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_12.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_13.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_14.n_31.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_14.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_1.n_2085.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_1.n_2085.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_2.n_1808.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_2.n_1808.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_3.n_1493.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_3.n_1493.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_4.n_490.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_4.n_490.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_5.n_465.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_5.n_465.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_6.n_437.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_6.n_437.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_7.n_312.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_7.n_312.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_8.n_273.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_8.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_9.n_118.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_9.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_0.n_1020.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_0.n_1020.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_10.n_324.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_10.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_11.n_290.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_11.n_290.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_13.n_124.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_13.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_14.n_95.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_14.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_15.n_82.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_15.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_16.n_67.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_16.n_67.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_9.n_332.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_9.n_332.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_0.n_862.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_0.n_862.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_10.n_99.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_10.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_11.n_75.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_11.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_12.n_65.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_12.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_13.n_61.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_13.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_14.n_58.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_14.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_16.n_29.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_16.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_17.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_18.n_28.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_18.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_19.n_23.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_19.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_1.n_618.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_1.n_618.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_2.n_533.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_2.n_533.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_3.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_4.n_232.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_4.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_5.n_209.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_5.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_6.n_199.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_6.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_7.n_147.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_7.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_8.n_132.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_8.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_9.n_123.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_9.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_0.n_474.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_0.n_474.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_10.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_1.n_343.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_1.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_2.n_152.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_2.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_3.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_4.n_121.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_4.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_5.n_115.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_5.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_6.n_83.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_6.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_7.n_73.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_7.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_8.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_9.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_10.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_11.n_27.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_11.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_12.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_13.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_1.n_122.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_1.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_2.n_121.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_2.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_3.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_4.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_5.n_68.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_5.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_6.n_67.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_6.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_7.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_8.n_43.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_8.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_9.n_41.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_9.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_0.n_8797.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_0.n_8797.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_10.n_244.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_10.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_11.n_204.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_11.n_204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_12.n_201.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_12.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_13.n_162.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_13.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_14.n_126.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_14.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_15.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_15.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_16.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_16.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_17.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_18.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_18.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_19.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_1.n_4550.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_1.n_4550.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_2.n_504.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_2.n_504.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_3.n_417.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_3.n_417.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_4.n_377.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_4.n_377.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_5.n_367.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_5.n_367.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_6.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_6.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_7.n_292.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_7.n_292.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_8.n_283.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_8.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_9.n_254.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_9.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_0.n_1457.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_0.n_1457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_10.n_429.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_10.n_429.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_11.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_11.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_12.n_325.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_12.n_325.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_13.n_292.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_13.n_292.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_14.n_282.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_14.n_282.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_15.n_224.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_15.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_16.n_221.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_16.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_17.n_216.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_17.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_18.n_206.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_18.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_19.n_201.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_19.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_1.n_1417.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_1.n_1417.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_20.n_176.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_20.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_21.n_168.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_21.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_22.n_144.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_22.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_23.n_134.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_23.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_24.n_123.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_24.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_25.n_111.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_25.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_26.n_104.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_26.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_27.n_75.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_27.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_28.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_28.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_29.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_2.n_1390.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_2.n_1390.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_30.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_30.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_3.n_1084.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_3.n_1084.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_4.n_674.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_4.n_674.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_5.n_664.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_5.n_664.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_6.n_649.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_6.n_649.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_7.n_594.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_7.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_8.n_579.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_8.n_579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_9.n_466.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_9.n_466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_0.n_2902.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_0.n_2902.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_10.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_1.n_1520.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_1.n_1520.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_2.n_1160.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_2.n_1160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_3.n_647.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_3.n_647.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_4.n_449.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_4.n_449.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_5.n_171.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_5.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_6.n_113.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_6.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_7.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_8.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_8.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_9.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_0.n_4497.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_0.n_4497.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_10.n_531.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_10.n_531.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_11.n_470.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_11.n_470.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_12.n_230.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_12.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_13.n_142.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_13.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_14.n_114.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_14.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_15.n_89.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_15.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_16.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_16.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_17.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_17.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_18.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_18.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_19.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_19.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_1.n_3820.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_1.n_3820.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_20.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_20.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_21.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_21.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_22.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_22.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_23.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_24.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_24.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_2.n_1368.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_2.n_1368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_3.n_1254.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_3.n_1254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_4.n_1093.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_4.n_1093.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_5.n_874.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_5.n_874.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_6.n_860.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_6.n_860.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_7.n_814.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_7.n_814.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_8.n_680.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_8.n_680.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_9.n_671.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_9.n_671.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_0.n_9955.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_0.n_9955.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_10.n_118.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_10.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_11.n_99.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_11.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_12.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_12.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_13.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_13.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_14.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_15.n_62.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_15.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_16.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_16.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_17.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_18.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_18.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_19.n_44.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_19.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_1.n_7014.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_1.n_7014.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_20.n_44.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_20.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_21.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_21.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_22.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_2.n_1067.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_2.n_1067.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_3.n_554.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_3.n_554.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_4.n_439.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_4.n_439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_5.n_398.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_5.n_398.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_6.n_366.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_6.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_7.n_360.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_7.n_360.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_8.n_144.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_8.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_9.n_121.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_9.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_0.n_2595.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_0.n_2595.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_10.n_108.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_10.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_11.n_99.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_11.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_12.n_98.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_12.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_13.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_14.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_14.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_15.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_15.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_16.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_1.n_980.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_1.n_980.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_2.n_484.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_2.n_484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_3.n_482.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_3.n_482.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_4.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_4.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_5.n_226.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_5.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_6.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_7.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_7.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_8.n_117.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_8.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_9.n_111.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_9.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_0.n_6485.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_0.n_6485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_10.n_232.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_10.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_11.n_163.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_11.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_12.n_115.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_12.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_13.n_43.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_13.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_14.n_43.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_2.n_844.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_2.n_844.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_3.n_842.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_3.n_842.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_4.n_604.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_4.n_604.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_5.n_415.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_5.n_415.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_6.n_325.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_6.n_325.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_7.n_298.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_7.n_298.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_8.n_269.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_8.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_9.n_235.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_9.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_0.n_927.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_0.n_927.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_10.n_215.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_10.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_11.n_213.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_11.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_12.n_203.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_12.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_13.n_201.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_13.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_14.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_14.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_15.n_101.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_15.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_16.n_71.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_16.n_71.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_19.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_19.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_1.n_306.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_1.n_306.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_20.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_20.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_21.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_22.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_22.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_23.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_23.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_2.n_294.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_2.n_294.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_3.n_291.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_3.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_4.n_287.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_4.n_287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_5.n_284.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_5.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_6.n_266.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_6.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_7.n_254.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_7.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_8.n_247.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_8.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_9.n_232.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_9.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_0.n_2595.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_0.n_2595.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_10.n_336.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_10.n_336.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_11.n_323.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_11.n_323.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_12.n_315.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_12.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_13.n_191.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_13.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_14.n_181.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_14.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_15.n_158.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_15.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_16.n_133.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_16.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_17.n_90.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_17.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_18.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_18.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_19.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_1.n_1900.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_1.n_1900.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_20.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_20.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_21.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_2.n_1673.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_2.n_1673.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_3.n_1124.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_3.n_1124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_4.n_890.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_4.n_890.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_5.n_677.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_5.n_677.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_6.n_649.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_6.n_649.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_7.n_588.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_7.n_588.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_8.n_451.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_8.n_451.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_9.n_337.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_9.n_337.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_0.n_946.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_0.n_946.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_10.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_1.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_1.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_2.n_208.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_2.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_3.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_3.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_4.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_5.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_6.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_7.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_8.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_9.n_44.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_9.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_0.n_906.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_0.n_906.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_10.n_226.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_10.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_11.n_224.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_11.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_12.n_210.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_12.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_13.n_190.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_13.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_14.n_108.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_14.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_15.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_1.n_893.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_1.n_893.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_2.n_579.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_2.n_579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_3.n_476.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_3.n_476.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_4.n_413.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_4.n_413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_5.n_347.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_5.n_347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_6.n_255.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_6.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_7.n_245.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_7.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_8.n_236.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_8.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_9.n_228.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_9.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_0.n_817.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_0.n_817.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_10.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_11.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_12.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_12.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_13.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_13.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_1.n_706.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_1.n_706.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_2.n_504.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_2.n_504.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_3.n_321.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_3.n_321.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_4.n_221.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_4.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_5.n_115.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_5.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_6.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_7.n_86.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_7.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_8.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_9.n_69.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_9.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_2.n_347.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_2.n_347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_0.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_0.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_10.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_1.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_2.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_3.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_4.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_5.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_6.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_7.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_9.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_1.n_269.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_1.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_2.n_217.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_2.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_3.n_146.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_3.n_146.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_7.n_73.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_7.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_8.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_9.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_9.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_0.n_269.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_0.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_10.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_10.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_11.n_71.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_11.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_12.n_67.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_12.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_13.n_64.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_13.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_14.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_14.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_15.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_15.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_16.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_16.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_17.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_18.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_18.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_19.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_19.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_1.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_20.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_20.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_22.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_23.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_24.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_2.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_2.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_3.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_3.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_4.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_5.n_95.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_5.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_6.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_7.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_7.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_8.n_86.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_8.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_9.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_9.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_0.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_0.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_10.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_1.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_2.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_3.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_4.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_5.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_6.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_7.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_9.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_1.n_269.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_1.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_2.n_217.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_2.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_3.n_146.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_3.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_4.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_5.n_112.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_5.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_6.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_7.n_73.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_7.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_8.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_9.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_9.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_0.n_269.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_0.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_10.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_10.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_11.n_71.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_11.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_12.n_67.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_12.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_13.n_64.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_13.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_14.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_14.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_15.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_15.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_16.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_16.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_17.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_18.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_18.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_19.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_19.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_1.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_20.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_20.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_22.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_23.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_24.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_2.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_2.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_3.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_3.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_4.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_5.n_95.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_5.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_6.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_7.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_7.n_87.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_9.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_9.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_0.n_4956.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_0.n_4956.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_10.n_241.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_10.n_241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_11.n_222.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_11.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_12.n_171.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_12.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_13.n_154.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_13.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_1.n_3078.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_1.n_3078.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_2.n_989.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_2.n_989.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_3.n_892.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_3.n_892.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_4.n_755.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_4.n_755.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_5.n_688.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_5.n_688.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_6.n_645.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_6.n_645.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_7.n_451.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_7.n_451.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_8.n_427.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_8.n_427.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_9.n_347.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_9.n_347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_0.n_525.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_0.n_525.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_10.n_142.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_10.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_11.n_141.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_11.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_12.n_141.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_12.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_13.n_126.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_13.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_14.n_121.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_14.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_15.n_113.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_15.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_16.n_105.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_18.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_19.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_1.n_319.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_1.n_319.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_2.n_318.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_2.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_3.n_222.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_3.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_4.n_211.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_4.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_5.n_202.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_5.n_202.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_11.n_222.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_11.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_12.n_171.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_12.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_13.n_154.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_13.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_1.n_3078.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_1.n_3078.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_2.n_989.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_2.n_989.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_3.n_892.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_3.n_892.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_4.n_755.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_4.n_755.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_5.n_688.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_5.n_688.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_6.n_645.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_6.n_645.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_7.n_451.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_7.n_451.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_8.n_427.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_8.n_427.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_9.n_347.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_9.n_347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_0.n_525.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_0.n_525.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_10.n_142.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_10.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_11.n_141.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_11.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_12.n_141.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_12.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_13.n_126.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_13.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_14.n_121.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_14.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_15.n_113.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_15.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_16.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_17.n_62.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_17.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_18.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_19.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_1.n_319.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_1.n_319.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_2.n_318.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_2.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_3.n_222.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_3.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_4.n_211.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_4.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_5.n_202.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_5.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_6.n_194.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_6.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_7.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_8.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_9.n_148.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_9.n_148.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_13.n_152.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_13.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_14.n_110.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_14.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_15.n_83.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_15.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_16.n_47.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_16.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_17.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_18.n_23.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_18.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_19.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_1.n_4580.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_1.n_4580.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_2.n_4045.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_2.n_4045.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_3.n_2471.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_3.n_2471.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_4.n_2363.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_4.n_2363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_5.n_2295.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_5.n_2295.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_6.n_1541.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_6.n_1541.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_7.n_1531.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_7.n_1531.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_8.n_1067.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_8.n_1067.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_9.n_575.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_9.n_575.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_0.n_1539.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_0.n_1539.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_10.n_95.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_10.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_11.n_77.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_11.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_12.n_67.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_12.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_13.n_65.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_13.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_14.n_56.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_14.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_15.n_43.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_15.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_16.n_39.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_16.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_17.n_34.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_17.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_1.n_351.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_1.n_351.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_2.n_297.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_2.n_297.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_3.n_207.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_3.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_4.n_152.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_4.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_5.n_145.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_5.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_6.n_139.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_6.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_7.n_137.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_7.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_8.n_135.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_8.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_9.n_104.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_9.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_0.n_1423.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_0.n_1423.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_10.n_376.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_10.n_376.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_11.n_319.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_11.n_319.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_12.n_305.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_12.n_305.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_13.n_112.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_13.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_14.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_15.n_34.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_15.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_16.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_1.n_1306.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_1.n_1306.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_2.n_1163.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_2.n_1163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_3.n_781.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_3.n_781.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_4.n_724.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_4.n_724.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_5.n_607.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_5.n_607.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_6.n_482.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_6.n_482.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_7.n_476.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_7.n_476.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_8.n_402.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_8.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_9.n_384.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_9.n_384.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_0.n_984.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_0.n_984.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_10.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_11.n_52.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_11.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_12.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_13.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_1.n_576.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_1.n_576.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_2.n_333.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_2.n_333.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_3.n_329.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_3.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_4.n_328.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_4.n_328.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_5.n_283.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_5.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_7.n_172.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_7.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_8.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_9.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_0.n_984.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_0.n_984.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_10.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_11.n_52.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_11.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_12.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_13.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_1.n_576.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_1.n_576.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_2.n_333.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_2.n_333.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_3.n_329.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_3.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_4.n_328.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_4.n_328.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_5.n_283.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_5.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_7.n_172.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_7.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_8.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_9.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_0.n_2004.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_0.n_2004.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_10.n_272.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_10.n_272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_11.n_261.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_11.n_261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_12.n_216.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_12.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_13.n_184.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_13.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_14.n_136.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_14.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_15.n_129.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_15.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_16.n_126.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_16.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_17.n_125.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_17.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_18.n_124.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_18.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_19.n_94.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_19.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_1.n_1835.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_1.n_1835.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_20.n_94.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_20.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_21.n_84.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_21.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_2.n_1185.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_2.n_1185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_3.n_751.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_3.n_751.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_4.n_653.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_4.n_653.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_5.n_386.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_5.n_386.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_6.n_358.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_6.n_358.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_7.n_323.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_7.n_323.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_8.n_312.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_8.n_312.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_9.n_293.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_9.n_293.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_0.n_1174.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_0.n_1174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_10.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_11.n_71.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_11.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_12.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_13.n_43.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_13.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_14.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_15.n_38.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_15.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_16.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_17.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_1.n_813.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_1.n_813.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_2.n_395.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_2.n_395.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_3.n_295.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_3.n_295.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_4.n_271.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_4.n_271.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_5.n_222.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_5.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_6.n_170.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_6.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_7.n_131.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_7.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_8.n_122.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_8.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_9.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_0.n_322.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_0.n_322.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_10.n_63.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_10.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_11.n_60.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_11.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_12.n_58.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_12.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_13.n_56.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_13.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_14.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_16.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_17.n_43.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_17.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_19.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_1.n_274.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_1.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_20.n_25.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_20.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_21.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_2.n_138.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_2.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_3.n_98.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_3.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_4.n_95.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_4.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_5.n_94.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_5.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_6.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_7.n_86.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_7.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_8.n_76.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_8.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_9.n_63.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_9.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_0.n_1422.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_0.n_1422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_1.n_409.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_1.n_409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_2.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_3.n_98.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_3.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_4.n_84.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_4.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_5.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_0.n_1107.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_0.n_1107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_10.n_46.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_10.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_11.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_1.n_569.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_1.n_569.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_2.n_224.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_2.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_3.n_184.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_3.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_4.n_178.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_4.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_5.n_156.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_5.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_6.n_107.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_6.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_7.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_8.n_64.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_8.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_0.n_1098.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_0.n_1098.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_10.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_11.n_52.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_11.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_12.n_30.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_12.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_13.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_1.n_737.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_1.n_737.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_2.n_446.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_2.n_446.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_3.n_285.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_3.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_4.n_97.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_4.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_5.n_95.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_5.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_6.n_88.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_6.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_7.n_88.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_7.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_8.n_74.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_8.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_9.n_61.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_9.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_0.n_491.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_0.n_491.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_1.n_349.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_1.n_349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_2.n_243.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_2.n_243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_3.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_0.n_1582.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_0.n_1582.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_10.n_78.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_10.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_1.n_1366.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_1.n_1366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_2.n_1178.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_2.n_1178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_3.n_658.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_3.n_658.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_4.n_423.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_4.n_423.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_5.n_393.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_5.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_6.n_325.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_6.n_325.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_7.n_193.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_7.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_8.n_177.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_8.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_9.n_168.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_9.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_0.n_4043.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_0.n_4043.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_10.n_363.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_10.n_363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_11.n_296.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_11.n_296.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_12.n_252.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_12.n_252.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_13.n_250.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_13.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_14.n_228.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_14.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_15.n_157.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_15.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_16.n_127.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_16.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_17.n_120.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_17.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_18.n_113.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_18.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_19.n_105.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_19.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_1.n_2491.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_1.n_2491.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_20.n_87.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_20.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_21.n_40.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_21.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_22.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_23.n_20.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_23.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_2.n_652.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_2.n_652.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_3.n_555.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_3.n_555.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_4.n_532.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_4.n_532.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_5.n_468.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_5.n_468.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_6.n_457.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_6.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_7.n_440.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_7.n_440.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_8.n_428.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_8.n_428.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_9.n_375.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_9.n_375.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK480-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK480-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK480-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK480-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_0.n_1807.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_0.n_1807.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_10.n_51.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_10.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_11.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_12.n_30.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_12.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_1.n_1370.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_1.n_1370.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_2.n_1076.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_2.n_1076.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_3.n_442.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_3.n_442.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_4.n_326.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_4.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_5.n_211.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_5.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_6.n_204.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_6.n_204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_7.n_157.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_7.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_8.n_126.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_8.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_0.n_1310.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_0.n_1310.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_10.n_163.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_10.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_11.n_84.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_11.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_12.n_81.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_12.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_13.n_72.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_13.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_14.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_15.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_16.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_17.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_1.n_512.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_1.n_512.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_2.n_231.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_2.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_3.n_210.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_3.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_4.n_207.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_4.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_5.n_201.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_5.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_6.n_195.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_6.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_7.n_188.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_7.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_8.n_184.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_8.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_9.n_183.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_9.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_0.n_10966.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_0.n_10966.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_10.n_482.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_10.n_482.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_11.n_409.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_11.n_409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_12.n_396.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_12.n_396.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_13.n_287.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_13.n_287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_14.n_273.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_14.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_15.n_264.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_15.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_16.n_264.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_16.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_17.n_236.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_17.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_18.n_229.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_18.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_19.n_130.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_19.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_1.n_3205.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_1.n_3205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_20.n_109.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_20.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_21.n_70.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_21.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_22.n_40.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_22.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_23.n_34.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_23.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_24.n_28.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_24.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_25.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_26.n_22.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_26.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_27.n_22.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_27.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_2.n_3028.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_2.n_3028.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_3.n_3007.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_3.n_3007.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_4.n_2743.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_4.n_2743.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_5.n_2705.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_5.n_2705.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_6.n_2266.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_6.n_2266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_7.n_724.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_7.n_724.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_8.n_566.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_8.n_566.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_9.n_538.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_9.n_538.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_0.n_3935.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_0.n_3935.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_10.n_80.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_10.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_11.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_12.n_63.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_12.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_13.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_1.n_1206.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_1.n_1206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_2.n_1045.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_2.n_1045.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_3.n_754.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_3.n_754.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_4.n_693.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_4.n_693.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_5.n_653.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_5.n_653.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_6.n_528.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_6.n_528.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_7.n_471.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_7.n_471.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_8.n_137.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_8.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_9.n_104.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_9.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_0.n_5288.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_0.n_5288.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_10.n_378.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_10.n_378.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_11.n_318.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_11.n_318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_12.n_300.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_12.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_13.n_283.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_13.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_14.n_211.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_14.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_15.n_159.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_15.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_16.n_117.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_16.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_17.n_86.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_17.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_18.n_60.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_18.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_19.n_46.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_19.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_1.n_1811.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_1.n_1811.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_20.n_23.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_20.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_2.n_1806.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_2.n_1806.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_3.n_1302.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_3.n_1302.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_4.n_1176.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_4.n_1176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_5.n_1085.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_5.n_1085.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_6.n_764.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_6.n_764.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_7.n_597.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_7.n_597.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_8.n_414.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_8.n_414.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_9.n_413.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_9.n_413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_0.n_14853.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_0.n_14853.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_10.n_268.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_10.n_268.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_11.n_222.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_11.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_12.n_130.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_12.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_13.n_103.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_13.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_14.n_80.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_14.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_15.n_80.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_15.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_16.n_70.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_16.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_17.n_58.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_17.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_18.n_43.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_18.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_19.n_40.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_19.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_1.n_3341.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_1.n_3341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_20.n_27.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_20.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_2.n_1675.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_2.n_1675.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_3.n_1056.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_3.n_1056.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_4.n_1042.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_4.n_1042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_5.n_985.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_5.n_985.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_6.n_678.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_6.n_678.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_7.n_589.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_7.n_589.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_8.n_573.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_8.n_573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_9.n_377.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_9.n_377.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_0.n_110.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_0.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_1.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_2.n_72.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_2.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_3.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_4.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_5.n_54.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_5.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_6.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_7.n_34.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_0.n_9566.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_0.n_9566.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_10.n_141.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_10.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_11.n_77.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_11.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_12.n_49.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_12.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_13.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_14.n_36.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_14.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_15.n_35.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_15.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_16.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_1.n_3402.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_1.n_3402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_2.n_2761.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_2.n_2761.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_3.n_2600.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_3.n_2600.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_4.n_2471.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_4.n_2471.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_5.n_1576.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_5.n_1576.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_6.n_1267.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_6.n_1267.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_7.n_1096.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_7.n_1096.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_8.n_809.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_8.n_809.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_10.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_1.n_101.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_1.n_101.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_10.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_11.n_31.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_11.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_1.n_1621.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_1.n_1621.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_2.n_963.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_2.n_963.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_3.n_694.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_3.n_694.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_4.n_164.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_4.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_5.n_114.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_5.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_6.n_107.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_6.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_7.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_8.n_80.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_8.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_9.n_78.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_9.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_0.n_4372.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_0.n_4372.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_1.n_1459.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_1.n_1459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_2.n_493.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_2.n_493.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_3.n_230.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_3.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_4.n_208.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_4.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_7.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_0.n_5595.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_0.n_5595.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_10.n_171.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_10.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_11.n_165.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_11.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_12.n_144.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_12.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_13.n_61.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_13.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_14.n_58.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_14.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_15.n_54.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_15.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_16.n_47.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_16.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_17.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_18.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_19.n_20.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_19.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_1.n_2444.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_1.n_2444.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_2.n_789.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_2.n_789.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_3.n_580.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_3.n_580.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_4.n_457.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_4.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_5.n_381.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_5.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_6.n_363.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_6.n_363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_7.n_333.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_7.n_333.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_8.n_304.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_8.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_9.n_200.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_9.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_0.n_13824.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_0.n_13824.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_10.n_492.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_10.n_492.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_11.n_276.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_11.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_12.n_260.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_12.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_13.n_143.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_13.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_14.n_108.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_14.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_15.n_58.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_15.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_17.n_39.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_17.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_1.n_9758.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_1.n_9758.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_2.n_3244.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_2.n_3244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_3.n_2916.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_3.n_2916.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_4.n_2866.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_4.n_2866.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_5.n_1536.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_5.n_1536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_6.n_1117.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_6.n_1117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_7.n_845.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_7.n_845.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_8.n_614.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_8.n_614.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_9.n_566.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_9.n_566.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_0.n_13753.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_0.n_13753.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_10.n_693.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_10.n_693.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_11.n_336.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_11.n_336.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_12.n_232.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_12.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_13.n_126.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_13.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_14.n_68.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_14.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_15.n_48.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_15.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_16.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_17.n_33.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_17.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_18.n_32.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_18.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_19.n_31.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_19.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_1.n_6071.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_1.n_6071.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_20.n_30.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_20.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_2.n_4373.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_2.n_4373.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_3.n_3543.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_3.n_3543.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_4.n_2442.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_4.n_2442.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_5.n_1772.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_5.n_1772.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_6.n_1269.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_6.n_1269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_7.n_1222.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_7.n_1222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_8.n_1198.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_8.n_1198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_9.n_702.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_9.n_702.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_0.n_490.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_0.n_490.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_10.n_83.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_10.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_11.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_12.n_63.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_12.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_13.n_49.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_13.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_14.n_33.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_14.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_15.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_1.n_372.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_1.n_372.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_2.n_148.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_2.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_3.n_138.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_3.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_4.n_102.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_4.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_5.n_96.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_5.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_6.n_90.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_6.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_7.n_88.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_7.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_8.n_85.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_8.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_9.n_83.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_9.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_0.n_5790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_10.n_203.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_10.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_11.n_172.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_11.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_12.n_161.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_12.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_13.n_136.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_13.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_14.n_130.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_14.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_15.n_124.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_15.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_16.n_111.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_16.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_17.n_91.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_17.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_18.n_69.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_18.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_19.n_62.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_19.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_1.n_2080.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_1.n_2080.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_20.n_55.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_20.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_21.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_2.n_1204.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_2.n_1204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_3.n_827.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_3.n_827.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_4.n_717.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_4.n_717.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_5.n_531.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_5.n_531.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_6.n_429.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_6.n_429.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_7.n_327.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_7.n_327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_8.n_252.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_8.n_252.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-H1-ENCSR000BQG.bestfold.profile.pattern_0.n_1592.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-H1-ENCSR000BQG.bestfold.profile.pattern_0.n_1592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-H1-ENCSR000BQG.bestfold.profile.pattern_1.n_321.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-H1-ENCSR000BQG.bestfold.profile.pattern_1.n_321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-H1-ENCSR000BQG.bestfold.profile.pattern_2.n_159.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-H1-ENCSR000BQG.bestfold.profile.pattern_2.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-H1-ENCSR000BQG.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-H1-ENCSR000BQG.bestfold.profile.pattern_3.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_0.n_11756.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_0.n_11756.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_10.n_43.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_10.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_11.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_12.n_38.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_12.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_13.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_14.n_32.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_14.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_15.n_29.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_15.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_16.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_17.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_1.n_6151.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_1.n_6151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_2.n_3050.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_2.n_3050.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_3.n_2190.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_3.n_2190.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_7.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_8.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_9.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_0.n_2515.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_0.n_2515.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_1.n_440.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_1.n_440.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_2.n_356.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_2.n_356.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_3.n_249.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_3.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_4.n_176.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_4.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_5.n_149.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_5.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_6.n_125.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_6.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_7.n_95.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_7.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_0.n_1734.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_0.n_1734.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_1.n_829.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_1.n_829.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_2.n_613.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_2.n_613.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_3.n_599.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_3.n_599.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_4.n_168.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_4.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_5.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_6.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_7.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_8.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_0.n_6340.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_0.n_6340.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_10.n_59.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_10.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_11.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_12.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_13.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_1.n_3790.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_1.n_3790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_2.n_1751.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_2.n_1751.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_3.n_928.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_3.n_928.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_4.n_362.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_4.n_362.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_5.n_265.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_5.n_265.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_6.n_245.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_6.n_245.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_8.n_83.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_8.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_9.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_0.n_31.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_0.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_2.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_0.n_5848.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_0.n_5848.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_10.n_273.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_10.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_11.n_190.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_11.n_190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_12.n_133.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_12.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_13.n_57.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_13.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_14.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_15.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_16.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_17.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_18.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_1.n_4508.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_1.n_4508.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_2.n_2395.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_2.n_2395.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_3.n_1928.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_3.n_1928.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_4.n_796.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_4.n_796.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_5.n_582.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_5.n_582.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_6.n_530.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_6.n_530.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_7.n_458.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_7.n_458.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_8.n_368.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_8.n_368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_9.n_278.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_9.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_0.n_2361.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_0.n_2361.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_10.n_118.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_10.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_11.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_11.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_12.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_12.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_13.n_37.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_13.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_14.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_1.n_1573.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_1.n_1573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_2.n_1289.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_2.n_1289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_3.n_855.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_3.n_855.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_4.n_344.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_4.n_344.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_5.n_312.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_5.n_312.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_6.n_289.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_6.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_7.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_8.n_206.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_8.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_9.n_135.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_9.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_0.n_1249.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_0.n_1249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_1.n_236.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_1.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_2.n_162.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_2.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_3.n_155.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_3.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_5.n_101.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_5.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_6.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_7.n_64.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_7.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_8.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_9.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_0.n_4974.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_0.n_4974.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_10.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_10.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_12.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_13.n_29.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_13.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_1.n_774.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_1.n_774.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_2.n_328.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_2.n_328.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_3.n_195.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_3.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_4.n_187.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_4.n_187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_5.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_5.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_6.n_142.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_6.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_7.n_111.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_7.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_8.n_97.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_8.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_9.n_95.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_9.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_0.n_1567.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_0.n_1567.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_1.n_1268.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_1.n_1268.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_2.n_785.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_2.n_785.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_3.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_3.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_4.n_241.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_4.n_241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_5.n_42.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_5.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_6.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_0.n_1151.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_0.n_1151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_1.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_2.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_2.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_3.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_4.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_5.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_5.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_6.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_7.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_8.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_0.n_1409.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_0.n_1409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_1.n_155.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_1.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_2.n_108.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_2.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_3.n_107.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_3.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_4.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_4.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_5.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_6.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_0.n_15649.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_0.n_15649.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_10.n_274.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_10.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_11.n_270.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_11.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_12.n_258.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_12.n_258.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_13.n_229.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_13.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_14.n_195.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_14.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_15.n_188.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_15.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_16.n_185.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_16.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_17.n_177.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_17.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_18.n_148.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_18.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_19.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_19.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_1.n_4136.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_1.n_4136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_20.n_85.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_20.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_21.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_21.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_22.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_22.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_23.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_23.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_24.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_24.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_25.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_25.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_26.n_36.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_26.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_27.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_27.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_28.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_28.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_2.n_1987.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_2.n_1987.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_3.n_1150.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_3.n_1150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_4.n_835.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_4.n_835.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_5.n_652.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_5.n_652.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_6.n_577.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_6.n_577.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_7.n_468.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_7.n_468.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_8.n_334.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_8.n_334.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_9.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_9.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_0.n_2445.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_0.n_2445.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_1.n_493.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_1.n_493.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_2.n_365.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_2.n_365.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_3.n_181.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_3.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_4.n_97.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_4.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_5.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_7.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_0.n_20892.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_0.n_20892.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_10.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_10.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_11.n_123.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_11.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_12.n_112.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_12.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_13.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_14.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_14.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_15.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_15.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_16.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_16.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_17.n_60.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_17.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_18.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_18.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_19.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_1.n_2377.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_1.n_2377.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_2.n_917.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_2.n_917.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_3.n_859.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_3.n_859.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_4.n_690.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_4.n_690.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_5.n_583.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_5.n_583.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_6.n_359.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_6.n_359.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_7.n_355.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_7.n_355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_8.n_235.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_8.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_9.n_195.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_9.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_0.n_20420.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_0.n_20420.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_10.n_214.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_10.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_11.n_208.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_11.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_12.n_168.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_12.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_13.n_163.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_13.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_14.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_14.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_15.n_100.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_15.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_16.n_98.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_16.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_17.n_96.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_17.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_18.n_85.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_18.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_19.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_1.n_1359.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_1.n_1359.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_20.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_20.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_21.n_69.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_21.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_22.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_22.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_23.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_23.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_24.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_24.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_25.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_25.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_26.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_26.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_2.n_1238.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_2.n_1238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_3.n_892.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_3.n_892.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_4.n_693.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_4.n_693.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_5.n_390.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_5.n_390.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_6.n_345.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_6.n_345.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_7.n_315.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_7.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_8.n_306.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_8.n_306.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_9.n_230.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_9.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR345YWJ.bestfold.profile.pattern_0.n_2133.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR345YWJ.bestfold.profile.pattern_0.n_2133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR345YWJ.bestfold.profile.pattern_1.n_481.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR345YWJ.bestfold.profile.pattern_1.n_481.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_0.n_6564.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_0.n_6564.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_10.n_361.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_10.n_361.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_11.n_274.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_11.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_12.n_99.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_12.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_13.n_59.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_13.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_14.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_15.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_1.n_5609.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_1.n_5609.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_2.n_1540.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_2.n_1540.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_3.n_959.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_3.n_959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_4.n_954.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_4.n_954.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_5.n_789.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_5.n_789.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_6.n_684.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_6.n_684.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_7.n_589.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_7.n_589.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_8.n_522.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_8.n_522.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_9.n_484.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_9.n_484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_0.n_6344.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_0.n_6344.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_10.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_10.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_11.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_11.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_1.n_892.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_1.n_892.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_2.n_429.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_2.n_429.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_3.n_244.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_3.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_4.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_4.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_5.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_5.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_6.n_120.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_6.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_7.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_7.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_8.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_9.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_9.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_0.n_4542.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_0.n_4542.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_1.n_1896.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_1.n_1896.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_2.n_367.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_2.n_367.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_3.n_203.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_3.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_4.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_6.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_0.n_856.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_0.n_856.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_10.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_11.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_11.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_1.n_535.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_1.n_535.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_2.n_301.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_2.n_301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_3.n_285.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_3.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_4.n_199.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_4.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_5.n_162.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_5.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_6.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_6.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_7.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_7.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_8.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_9.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_0.n_2820.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_0.n_2820.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_1.n_580.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_1.n_580.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_2.n_332.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_2.n_332.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_3.n_331.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_3.n_331.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_4.n_181.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_4.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_5.n_90.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_5.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_6.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_7.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_8.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_0.n_400.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_0.n_400.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_10.n_131.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_10.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_11.n_119.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_11.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_12.n_108.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_12.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_13.n_104.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_13.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_14.n_84.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_14.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_15.n_61.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_15.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_16.n_51.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_16.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_17.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_1.n_389.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_1.n_389.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_2.n_344.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_2.n_344.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_3.n_284.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_3.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_4.n_276.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_4.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_5.n_273.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_5.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_6.n_268.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_6.n_268.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_7.n_182.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_7.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_8.n_151.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_8.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_9.n_148.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_9.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_0.n_600.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_0.n_600.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_10.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_11.n_63.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_11.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_12.n_61.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_12.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_13.n_57.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_13.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_14.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_15.n_51.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_15.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_16.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_17.n_47.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_17.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_18.n_45.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_18.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_19.n_37.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_19.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_1.n_288.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_1.n_288.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_20.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_21.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_22.n_31.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_22.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_23.n_20.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_23.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_2.n_159.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_2.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_3.n_150.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_3.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_4.n_131.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_4.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_5.n_102.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_5.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_6.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_7.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_8.n_79.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_8.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_0.n_176.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_0.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_10.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_11.n_64.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_11.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_12.n_58.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_12.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_13.n_58.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_13.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_14.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_15.n_54.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_15.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_16.n_51.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_16.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_17.n_49.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_17.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_18.n_43.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_18.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_19.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_1.n_169.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_1.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_20.n_24.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_20.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_2.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_3.n_144.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_3.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_4.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_5.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_6.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_7.n_86.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_7.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_8.n_72.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_8.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_9.n_68.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_9.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_0.n_212.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_0.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_1.n_66.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_1.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_2.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_3.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_4.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_5.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_0.n_5535.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_0.n_5535.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_10.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_1.n_1402.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_1.n_1402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_2.n_765.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_2.n_765.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_3.n_443.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_3.n_443.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_4.n_412.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_4.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_5.n_401.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_5.n_401.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_6.n_365.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_6.n_365.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_7.n_302.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_7.n_302.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_8.n_250.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_8.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_9.n_99.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_9.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_0.n_226.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_0.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_1.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_2.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_6.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_0.n_289.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_0.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_1.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_2.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_5.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_6.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_0.n_138.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_0.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_1.n_36.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_1.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_2.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_0.n_5220.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_0.n_5220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_10.n_262.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_10.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_11.n_225.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_11.n_225.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_12.n_185.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_12.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_13.n_171.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_13.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_14.n_162.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_14.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_15.n_150.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_15.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_16.n_147.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_16.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_17.n_140.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_17.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_18.n_101.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_18.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_19.n_93.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_19.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_1.n_1451.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_1.n_1451.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_20.n_78.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_20.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_21.n_75.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_21.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_22.n_69.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_22.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_23.n_67.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_23.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_24.n_65.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_24.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_25.n_60.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_25.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_26.n_53.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_26.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_27.n_48.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_27.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_28.n_42.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_28.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_29.n_33.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_29.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_2.n_1322.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_2.n_1322.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_30.n_24.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_30.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_3.n_1243.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_3.n_1243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_4.n_791.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_4.n_791.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_5.n_630.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_5.n_630.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_6.n_594.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_6.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_7.n_498.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_7.n_498.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_8.n_385.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_8.n_385.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_9.n_344.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_9.n_344.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_0.n_2719.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_0.n_2719.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_10.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_11.n_72.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_11.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_12.n_60.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_12.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_13.n_53.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_13.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_14.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_16.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_17.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_1.n_394.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_1.n_394.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_2.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_3.n_225.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_3.n_225.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_4.n_200.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_4.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_5.n_155.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_5.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_6.n_132.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_6.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_7.n_129.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_7.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_8.n_102.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_8.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_9.n_93.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_9.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_0.n_679.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_0.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_1.n_189.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_1.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_2.n_181.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_2.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_3.n_77.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_3.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_4.n_66.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_4.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_5.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_6.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_6.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_7.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_0.n_346.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_0.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_1.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_2.n_114.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_2.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_3.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_4.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_5.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_6.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_7.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_0.n_679.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_0.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_1.n_189.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_1.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_2.n_181.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_2.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_3.n_77.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_3.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_4.n_66.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_4.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_5.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_6.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_6.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_7.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_0.n_346.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_0.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_1.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_2.n_114.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_2.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_3.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_4.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_5.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_6.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_7.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_0.n_259.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_0.n_259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_10.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_12.n_28.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_12.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_13.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_1.n_238.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_1.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_2.n_203.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_2.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_3.n_175.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_3.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_4.n_153.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_4.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_5.n_147.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_5.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_6.n_138.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_6.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_7.n_102.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_7.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_8.n_100.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_8.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_9.n_73.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_9.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_0.n_39.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_0.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_1.n_37.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_1.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_0.n_405.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_0.n_405.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_10.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_1.n_246.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_1.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_2.n_100.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_2.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_3.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_4.n_69.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_4.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_5.n_62.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_5.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_6.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_7.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_8.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK599-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK599-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK599-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK599-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_0.n_2032.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_0.n_2032.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_10.n_156.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_10.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_11.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_12.n_129.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_12.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_13.n_89.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_13.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_14.n_71.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_14.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_15.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_1.n_1838.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_1.n_1838.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_2.n_1243.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_2.n_1243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_3.n_868.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_3.n_868.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_4.n_570.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_4.n_570.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_5.n_376.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_5.n_376.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_6.n_367.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_6.n_367.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_7.n_341.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_7.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_8.n_276.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_8.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_9.n_227.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_9.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_0.n_2034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_1.n_518.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_1.n_518.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_2.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_3.n_251.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_3.n_251.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_4.n_127.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_4.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_5.n_92.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_5.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_6.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_7.n_33.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_7.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_8.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_9.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_0.n_8064.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_0.n_8064.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_1.n_1667.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_1.n_1667.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_2.n_1138.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_2.n_1138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_3.n_441.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_3.n_441.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_4.n_399.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_4.n_399.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_5.n_333.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_5.n_333.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_6.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_7.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_0.n_1316.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_0.n_1316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_10.n_104.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_10.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_11.n_100.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_11.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_12.n_92.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_12.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_13.n_76.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_13.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_14.n_64.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_14.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_15.n_44.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_15.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_16.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_17.n_31.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_17.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_18.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_19.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_1.n_981.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_1.n_981.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_2.n_263.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_2.n_263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_3.n_234.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_3.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_4.n_219.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_4.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_5.n_178.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_5.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_6.n_157.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_6.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_7.n_121.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_7.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_8.n_115.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_8.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_9.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_0.n_2424.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_0.n_2424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_10.n_396.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_10.n_396.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_11.n_396.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_11.n_396.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_12.n_388.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_12.n_388.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_13.n_299.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_13.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_14.n_274.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_14.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_15.n_213.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_15.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_16.n_163.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_16.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_17.n_55.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_17.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_18.n_50.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_18.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_1.n_1840.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_1.n_1840.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_2.n_1421.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_2.n_1421.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_3.n_950.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_3.n_950.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_4.n_842.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_4.n_842.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_5.n_758.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_5.n_758.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_6.n_653.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_6.n_653.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_7.n_519.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_7.n_519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_8.n_492.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_8.n_492.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_9.n_460.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_9.n_460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_0.n_610.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_0.n_610.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_10.n_133.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_10.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_11.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_12.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_13.n_30.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_13.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_1.n_540.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_1.n_540.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_2.n_404.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_2.n_404.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_3.n_376.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_3.n_376.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_4.n_280.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_4.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_5.n_244.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_5.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_6.n_244.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_6.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_7.n_228.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_7.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_8.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_9.n_138.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_9.n_138.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_14.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_15.n_52.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_15.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_16.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_17.n_38.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_17.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_18.n_36.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_18.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_19.n_20.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_19.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_1.n_1019.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_1.n_1019.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_2.n_832.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_2.n_832.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_3.n_709.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_3.n_709.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_4.n_693.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_4.n_693.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_5.n_413.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_5.n_413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_6.n_393.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_6.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_7.n_380.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_7.n_380.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_8.n_298.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_8.n_298.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_9.n_235.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_9.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HEK517-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HEK517-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HEK517-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HEK517-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_0.n_1061.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_0.n_1061.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_10.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_1.n_749.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_1.n_749.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_2.n_371.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_2.n_371.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_3.n_221.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_3.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_4.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_5.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_6.n_103.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_6.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_7.n_75.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_7.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_8.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_9.n_31.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_9.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_0.n_28879.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_0.n_28879.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_10.n_47.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_10.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_11.n_22.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_2.n_466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_3.n_236.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_3.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_4.n_205.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_4.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_5.n_202.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_5.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_6.n_136.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_6.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_7.n_130.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_7.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_8.n_76.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_8.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_9.n_59.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_9.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_0.n_645.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_0.n_645.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_10.n_98.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_10.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_11.n_95.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_11.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_12.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_13.n_49.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_13.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_14.n_48.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_14.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_15.n_41.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_15.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_1.n_376.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_1.n_376.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_2.n_213.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_2.n_213.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_5.n_136.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_8.n_118.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_8.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_9.n_115.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_9.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_0.n_10251.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_0.n_10251.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_1.n_1716.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_1.n_1716.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_2.n_1610.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_2.n_1610.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_3.n_1223.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_3.n_1223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_0.n_1022.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_0.n_1022.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_10.n_81.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_10.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_11.n_63.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_11.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_12.n_52.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_12.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_13.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_1.n_274.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_1.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_2.n_255.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_2.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_3.n_181.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_3.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_4.n_176.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_4.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_5.n_153.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_5.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_6.n_143.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_6.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_7.n_134.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_7.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_8.n_93.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_8.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_9.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_0.n_528.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_0.n_528.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_10.n_68.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_10.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_11.n_62.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_11.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_1.n_517.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_1.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_2.n_364.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_2.n_364.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_3.n_209.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_3.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_4.n_187.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_4.n_187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_5.n_154.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_5.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_6.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_7.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_8.n_111.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_8.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_9.n_80.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_9.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_1.n_699.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_1.n_699.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_2.n_245.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_2.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_3.n_223.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_3.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_4.n_199.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_4.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_5.n_164.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_5.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_6.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_7.n_88.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_7.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_8.n_85.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_8.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_0.n_363.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_0.n_363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_10.n_73.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_10.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_11.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_12.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_13.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_14.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_15.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_16.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_17.n_34.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_17.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_18.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_19.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_1.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_2.n_196.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_2.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_3.n_186.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_3.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_4.n_143.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_4.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_5.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_6.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_7.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_8.n_89.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_8.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_1.n_699.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_1.n_699.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_2.n_245.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_2.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_3.n_223.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_3.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_4.n_199.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_4.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_5.n_164.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_5.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_6.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_7.n_88.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_7.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_8.n_85.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_8.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_0.n_363.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_0.n_363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_10.n_73.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_10.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_11.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_12.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_13.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_14.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_15.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_16.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_17.n_34.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_17.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_18.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_19.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_1.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_2.n_196.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_2.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_3.n_186.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_3.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_4.n_143.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_4.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_5.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_6.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_7.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_8.n_89.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_8.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_0.n_2751.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_0.n_2751.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_1.n_858.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_1.n_858.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_2.n_166.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_2.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_3.n_151.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_3.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_4.n_92.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_4.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_5.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_0.n_1579.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_0.n_1579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_10.n_147.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_10.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_11.n_130.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_11.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_12.n_127.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_12.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_13.n_127.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_13.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_14.n_120.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_14.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_15.n_113.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_15.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_16.n_108.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_16.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_17.n_99.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_17.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_18.n_98.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_18.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_19.n_79.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_19.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_1.n_918.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_1.n_918.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_20.n_68.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_20.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_21.n_60.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_21.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_22.n_52.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_22.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_23.n_44.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_23.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_24.n_42.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_24.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_25.n_38.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_25.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_26.n_28.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_26.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_2.n_909.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_2.n_909.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_3.n_469.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_3.n_469.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_4.n_456.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_4.n_456.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_5.n_417.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_5.n_417.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_6.n_208.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_6.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_7.n_185.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_7.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_8.n_183.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_8.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_9.n_177.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_9.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_0.n_2451.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_0.n_2451.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_10.n_320.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_10.n_320.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_11.n_251.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_11.n_251.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_12.n_248.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_12.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_13.n_193.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_13.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_14.n_182.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_14.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_15.n_88.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_15.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_16.n_47.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_16.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_17.n_30.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_17.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_18.n_26.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_18.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_19.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_1.n_1874.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_1.n_1874.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_2.n_1099.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_2.n_1099.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_3.n_976.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_3.n_976.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_4.n_738.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_4.n_738.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_5.n_657.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_5.n_657.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_6.n_566.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_6.n_566.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_7.n_509.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_7.n_509.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_8.n_401.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_8.n_401.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_9.n_339.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_9.n_339.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_0.n_1286.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_0.n_1286.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_10.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_11.n_31.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_11.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_12.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_1.n_699.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_1.n_699.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_2.n_552.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_2.n_552.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_3.n_490.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_3.n_490.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_4.n_461.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_4.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_5.n_432.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_5.n_432.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_7.n_358.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_7.n_358.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_8.n_195.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_8.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_9.n_186.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_9.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF514-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_0.n_837.PWM.meme motif-alignments-all-vs-all/ZNF514/ZNF514-201-vs-ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_0.n_837.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF514-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_1.n_180.PWM.meme motif-alignments-all-vs-all/ZNF514/ZNF514-201-vs-ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_1.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF514-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_2.n_111.PWM.meme motif-alignments-all-vs-all/ZNF514/ZNF514-201-vs-ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_2.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_0.n_214.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_0.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_1.n_123.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_1.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_2.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_3.n_67.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_3.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_4.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_0.n_2066.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_0.n_2066.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_10.n_442.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_10.n_442.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_11.n_418.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_11.n_418.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_12.n_229.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_12.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_13.n_186.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_13.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_14.n_125.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_14.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_15.n_89.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_15.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_1.n_1493.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_1.n_1493.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_2.n_1091.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_2.n_1091.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_3.n_1046.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_3.n_1046.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_5.n_758.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_5.n_758.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_6.n_660.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_6.n_660.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_7.n_602.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_7.n_602.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_8.n_565.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_8.n_565.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_9.n_448.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_9.n_448.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_1.n_418.PWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_1.n_418.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_6.n_105.PWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_6.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_7.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_9.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_0.n_1582.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_0.n_1582.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_10.n_262.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_10.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_11.n_186.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_11.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_12.n_155.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_12.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_13.n_145.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_13.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_14.n_138.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_14.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_15.n_103.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_15.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_16.n_55.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_16.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_17.n_30.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_17.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_1.n_1372.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_1.n_1372.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_2.n_531.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_2.n_531.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_3.n_381.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_3.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_4.n_317.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_4.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_5.n_296.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_5.n_296.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_6.n_285.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_6.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_7.n_278.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_7.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_8.n_276.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_8.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_9.n_269.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_9.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_0.n_443.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_0.n_443.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_10.n_69.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_10.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_12.n_57.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_12.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_13.n_26.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_13.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_14.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_1.n_112.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_1.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_2.n_110.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_2.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_3.n_105.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_3.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_4.n_97.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_4.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_5.n_89.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_5.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_6.n_86.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_6.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_7.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_8.n_75.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_8.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_9.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_0.n_1612.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_0.n_1612.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_10.n_110.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_10.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_11.n_85.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_11.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_12.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_13.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_14.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_15.n_43.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_15.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_16.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_17.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_18.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_1.n_1329.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_1.n_1329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_2.n_1091.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_2.n_1091.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_3.n_1001.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_3.n_1001.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_4.n_953.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_4.n_953.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_5.n_277.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_5.n_277.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_6.n_199.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_6.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_7.n_199.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_7.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_8.n_197.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_8.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_9.n_141.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_9.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_0.n_306.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_0.n_306.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_10.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_1.n_161.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_1.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_2.n_124.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_2.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_3.n_117.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_3.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_4.n_84.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_4.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_5.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_6.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_7.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_8.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_9.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_0.n_619.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_0.n_619.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_10.n_121.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_10.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_11.n_110.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_11.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_12.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_13.n_89.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_13.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_14.n_81.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_14.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_15.n_67.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_15.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_16.n_61.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_16.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_17.n_60.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_17.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_18.n_58.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_18.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_19.n_57.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_19.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_1.n_555.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_1.n_555.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_20.n_50.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_20.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_2.n_526.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_2.n_526.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_3.n_403.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_3.n_403.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_4.n_374.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_4.n_374.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_5.n_310.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_5.n_310.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_6.n_216.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_6.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_7.n_186.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_7.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_8.n_147.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_8.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_9.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_0.n_4500.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_0.n_4500.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_10.n_61.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_10.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_11.n_40.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_11.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_12.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_13.n_39.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_13.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_14.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_15.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_16.n_29.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_16.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_17.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_18.n_25.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_18.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_19.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_1.n_214.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_1.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_2.n_208.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_2.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_3.n_195.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_3.n_195.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_5.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_6.n_105.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_6.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_7.n_90.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_7.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_8.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_9.n_76.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_10.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_11.n_61.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_11.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_12.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_13.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_14.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_15.n_49.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_17.n_43.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_17.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_18.n_35.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_2.n_311.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_12.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_13.n_39.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_13.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_14.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_15.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_16.n_29.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_16.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_17.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_18.n_25.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_18.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_19.n_21.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_2.n_208.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_2.n_208.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_22.n_23.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_22.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_23.n_21.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_23.n_21.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_4.n_736.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_4.n_736.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_17.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_1.n_6662.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_1.n_6662.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_3.n_1610.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_3.n_1610.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_4.n_1078.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_4.n_1078.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_5.n_602.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_5.n_602.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_6.n_320.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_6.n_320.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_7.n_237.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_7.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_8.n_222.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_8.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_9.n_117.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_9.n_117.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_3.n_881.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_3.n_881.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_4.n_569.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_4.n_569.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_5.n_448.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_5.n_448.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_6.n_387.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_6.n_387.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_3.n_1610.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_3.n_1610.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_10.n_241.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_10.n_241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_11.n_241.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_11.n_241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_12.n_235.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_12.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_13.n_199.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_13.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_14.n_181.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_14.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_15.n_134.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_15.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_16.n_95.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_16.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_17.n_60.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_17.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_18.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_19.n_33.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_19.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_1.n_1277.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_1.n_1277.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_2.n_911.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_2.n_911.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_3.n_610.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_3.n_610.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_4.n_334.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_4.n_334.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_5.n_312.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_5.n_312.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_6.n_281.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_6.n_281.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_7.n_278.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_7.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_8.n_257.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_8.n_257.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_9.n_244.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_9.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_0.n_204.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_0.n_204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_10.n_44.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_10.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_11.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_12.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_13.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_1.n_126.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_1.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_2.n_114.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_2.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_3.n_101.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_3.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_4.n_93.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_4.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_5.n_92.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_5.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_6.n_70.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_6.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_7.n_60.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_7.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_8.n_59.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_8.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_9.n_45.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_9.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_0.n_1624.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_0.n_1624.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_10.n_147.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_10.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_11.n_115.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_11.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_12.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_13.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_1.n_755.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_1.n_755.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_2.n_621.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_2.n_621.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_3.n_459.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_3.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_4.n_443.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_4.n_443.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_5.n_325.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_5.n_325.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_6.n_277.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_6.n_277.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_7.n_248.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_7.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_8.n_225.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_8.n_225.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_9.n_189.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_9.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF426-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_0.n_10016.PWM.meme motif-alignments-all-vs-all/ZNF426/ZNF426-201-vs-ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_0.n_10016.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF426-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_1.n_45.PWM.meme motif-alignments-all-vs-all/ZNF426/ZNF426-201-vs-ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_1.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_0.n_291.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_0.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_10.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_1.n_240.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_1.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_2.n_185.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_2.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_3.n_161.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_3.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_4.n_103.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_4.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_5.n_72.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_5.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_6.n_65.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_6.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_7.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_0.n_661.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_0.n_661.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_1.n_626.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_1.n_626.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_2.n_137.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_2.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_3.n_120.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_3.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_4.n_112.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_4.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_5.n_89.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_5.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_6.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_7.n_63.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_7.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_8.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_9.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_0.n_3800.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_0.n_3800.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_10.n_196.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_10.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_11.n_181.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_11.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_12.n_169.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_12.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_13.n_103.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_13.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_14.n_103.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_14.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_15.n_101.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_15.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_16.n_86.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_16.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_17.n_86.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_17.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_18.n_83.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_18.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_19.n_68.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_19.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_1.n_3129.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_1.n_3129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_20.n_67.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_20.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_21.n_63.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_21.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_22.n_47.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_22.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_23.n_34.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_23.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_24.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_2.n_1996.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_2.n_1996.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_3.n_1401.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_3.n_1401.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_4.n_672.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_4.n_672.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_5.n_550.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_5.n_550.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_6.n_508.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_6.n_508.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_7.n_410.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_7.n_410.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_8.n_320.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_8.n_320.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_9.n_222.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_9.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_0.n_5773.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_0.n_5773.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_10.n_167.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_10.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_11.n_167.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_11.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_12.n_98.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_12.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_13.n_52.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_15.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_1.n_2418.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_1.n_2418.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_2.n_2364.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_2.n_2364.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_4.n_1366.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_4.n_1366.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_0.n_3545.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_0.n_3545.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_1.n_1614.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_1.n_1614.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_2.n_1247.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_2.n_1247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_0.n_1526.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_0.n_1526.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_10.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_11.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_12.n_40.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_12.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_13.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_1.n_327.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_1.n_327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_2.n_226.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_2.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_3.n_219.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_3.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_4.n_209.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_4.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_5.n_203.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_5.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_6.n_183.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_6.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_7.n_150.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_7.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_8.n_92.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_8.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_9.n_67.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_9.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_0.n_1880.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_0.n_1880.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_1.n_87.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_1.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_2.n_60.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_2.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_0.n_5278.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_0.n_5278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_10.n_227.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_10.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_11.n_227.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_11.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_12.n_217.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_12.n_217.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_15.n_160.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_15.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_16.n_143.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_16.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_17.n_107.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_17.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_18.n_91.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_18.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_19.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_1.n_4551.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_1.n_4551.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_20.n_54.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_20.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_21.n_53.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_21.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_22.n_53.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_22.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_23.n_43.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_23.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_24.n_38.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_24.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_25.n_26.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_25.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_26.n_23.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_26.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_2.n_1671.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_2.n_1671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_3.n_1357.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_3.n_1357.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_4.n_856.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_4.n_856.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_5.n_397.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_5.n_397.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_6.n_303.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_6.n_303.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_7.n_285.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_7.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_8.n_269.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_8.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_9.n_239.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_9.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_0.n_351.PWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_0.n_351.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_1.n_80.PWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_1.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_2.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_3.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_4.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_0.n_1041.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_0.n_1041.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_10.n_107.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_10.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_11.n_96.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_11.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_12.n_86.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_12.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_13.n_76.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_13.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_14.n_65.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_14.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_15.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_16.n_59.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_16.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_17.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_18.n_35.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_1.n_616.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_1.n_616.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_20.n_24.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_20.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_2.n_466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_3.n_318.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_3.n_318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_4.n_307.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_4.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_5.n_288.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_5.n_288.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_6.n_281.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_6.n_281.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_7.n_228.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_7.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_8.n_174.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_8.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_9.n_119.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_9.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_0.n_658.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_0.n_658.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_10.n_56.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_10.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_11.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_12.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_13.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_14.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_15.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_16.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_1.n_145.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_1.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_2.n_130.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_2.n_130.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_4.n_115.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_4.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_5.n_100.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_5.n_100.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_0.n_3057.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_0.n_3057.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_3.n_499.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_3.n_499.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_4.n_432.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_4.n_432.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_5.n_385.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_5.n_385.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_6.n_363.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_6.n_363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_7.n_355.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_7.n_355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_8.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_9.n_163.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_9.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_0.n_658.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_0.n_658.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_10.n_56.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_10.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_11.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_12.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_13.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_14.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_15.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_16.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_1.n_145.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_1.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_2.n_130.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_2.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_3.n_123.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_3.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_4.n_115.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_4.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_5.n_100.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_5.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_6.n_95.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_6.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_7.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_8.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_8.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_9.n_60.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_10.n_134.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_10.n_134.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_6.n_363.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_6.n_363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_7.n_355.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_7.n_355.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_0.n_5721.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_0.n_5721.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_0.n_1097.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_0.n_1097.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_10.n_88.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_10.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_11.n_54.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_11.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_12.n_38.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_12.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_1.n_521.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_1.n_521.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_2.n_402.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_2.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_3.n_286.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_3.n_286.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_4.n_261.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_4.n_261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_5.n_260.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_5.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_6.n_248.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_6.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_7.n_232.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_7.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_8.n_182.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_8.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_9.n_168.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_9.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_10.n_201.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_10.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_11.n_169.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_11.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_12.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_13.n_119.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_13.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_14.n_98.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_14.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_15.n_96.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_15.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_16.n_68.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_16.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_17.n_61.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_17.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_18.n_46.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_18.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_1.n_788.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_1.n_788.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_20.n_41.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_20.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_21.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_22.n_25.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_22.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_23.n_24.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_23.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_24.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_25.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_2.n_750.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_2.n_750.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_3.n_746.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_3.n_746.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_4.n_677.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_4.n_677.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_5.n_578.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_5.n_578.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_6.n_512.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_6.n_512.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_7.n_335.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_7.n_335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_8.n_293.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_8.n_293.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_9.n_283.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_9.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_0.n_1097.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_0.n_1097.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_10.n_88.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_10.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_11.n_54.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_11.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_12.n_38.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_12.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_1.n_521.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_1.n_521.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_2.n_402.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_2.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_3.n_286.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_3.n_286.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_4.n_261.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_4.n_261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_5.n_260.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_5.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_6.n_248.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_6.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_7.n_232.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_7.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_8.n_182.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_8.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_9.n_168.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_9.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_10.n_201.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_10.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_11.n_169.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_11.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_12.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_13.n_119.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_13.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_14.n_98.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_14.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_15.n_96.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_15.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_16.n_68.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_16.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_17.n_61.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_17.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_18.n_46.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_18.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_1.n_788.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_1.n_788.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_20.n_41.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_20.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_21.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_22.n_25.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_22.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_23.n_24.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_23.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_24.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_25.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_2.n_750.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_2.n_750.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_3.n_746.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_3.n_746.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_4.n_677.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_4.n_677.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_5.n_578.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_5.n_578.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_6.n_512.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_6.n_512.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_7.n_335.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_7.n_335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_8.n_293.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_8.n_293.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_9.n_283.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_9.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_0.n_724.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_0.n_724.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_10.n_78.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_10.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_11.n_66.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_11.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_12.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_13.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_14.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_1.n_132.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_1.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_2.n_116.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_2.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_3.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_4.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_5.n_98.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_5.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_8.n_83.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_8.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_9.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_0.n_724.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_0.n_724.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_10.n_78.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_10.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_11.n_66.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_11.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_12.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_13.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_14.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_1.n_132.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_1.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_2.n_116.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_2.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_3.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_4.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_5.n_98.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_5.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_8.n_83.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_8.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_9.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_0.n_2712.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_0.n_2712.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_10.n_203.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_10.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_11.n_150.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_11.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_12.n_123.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_12.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_13.n_114.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_13.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_14.n_81.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_14.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_15.n_66.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_15.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_16.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_17.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_18.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_1.n_2308.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_1.n_2308.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_2.n_871.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_2.n_871.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_3.n_718.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_3.n_718.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_4.n_447.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_4.n_447.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_5.n_410.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_5.n_410.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_6.n_259.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_6.n_259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_7.n_239.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_7.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_8.n_238.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_8.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_9.n_223.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_9.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_0.n_2320.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_0.n_2320.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_10.n_185.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_10.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_11.n_176.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_11.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_12.n_173.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_12.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_13.n_156.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_13.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_14.n_119.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_14.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_15.n_110.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_15.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_16.n_108.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_16.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_17.n_37.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_17.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_1.n_773.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_1.n_773.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_2.n_455.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_2.n_455.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_3.n_444.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_3.n_444.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_4.n_352.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_4.n_352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_5.n_340.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_5.n_340.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_6.n_330.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_6.n_330.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_7.n_308.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_7.n_308.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_8.n_279.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_8.n_279.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_9.n_203.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_9.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_0.n_224.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_0.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_1.n_105.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_1.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_2.n_75.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_2.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_3.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_4.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_7.n_30.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_7.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_8.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_9.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_0.n_615.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_0.n_615.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_10.n_163.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_10.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_11.n_149.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_11.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_12.n_129.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_12.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_13.n_100.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_13.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_14.n_96.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_14.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_15.n_90.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_15.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_16.n_85.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_16.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_17.n_82.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_17.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_18.n_40.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_18.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_19.n_36.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_19.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_1.n_576.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_1.n_576.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_20.n_28.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_20.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_2.n_571.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_2.n_571.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_3.n_446.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_3.n_446.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_4.n_410.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_4.n_410.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_5.n_259.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_5.n_259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_6.n_242.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_6.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_7.n_221.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_7.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_8.n_205.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_8.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_9.n_166.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_9.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_0.n_4734.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_0.n_4734.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_10.n_291.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_10.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_11.n_276.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_11.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_12.n_274.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_12.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_13.n_213.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_13.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_14.n_113.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_14.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_15.n_94.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_15.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_16.n_73.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_16.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_17.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_18.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_19.n_23.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_19.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_1.n_3757.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_1.n_3757.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_20.n_22.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_20.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_2.n_1833.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_2.n_1833.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_3.n_1534.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_3.n_1534.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_4.n_1131.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_4.n_1131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_5.n_744.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_5.n_744.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_6.n_549.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_6.n_549.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_7.n_534.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_7.n_534.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_8.n_368.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_8.n_368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_9.n_294.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_9.n_294.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_0.n_5255.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_0.n_5255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_10.n_132.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_10.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_11.n_86.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_11.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_12.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_13.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_1.n_3333.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_1.n_3333.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_2.n_1266.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_2.n_1266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_3.n_506.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_3.n_506.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_4.n_473.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_4.n_473.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_5.n_279.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_5.n_279.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_6.n_265.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_6.n_265.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_7.n_230.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_7.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_8.n_179.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_8.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_9.n_150.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_9.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_0.n_490.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_0.n_490.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_10.n_95.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_10.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_11.n_92.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_11.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_12.n_88.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_12.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_13.n_84.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_13.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_14.n_83.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_14.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_15.n_82.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_15.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_16.n_80.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_16.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_17.n_79.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_17.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_18.n_72.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_18.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_19.n_63.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_19.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_1.n_298.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_1.n_298.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_20.n_36.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_20.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_21.n_24.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_21.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_22.n_23.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_22.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_23.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_2.n_208.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_2.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_3.n_203.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_3.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_4.n_202.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_4.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_5.n_144.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_5.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_6.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_7.n_123.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_7.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_8.n_99.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_8.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_9.n_95.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_9.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_0.n_2205.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_0.n_2205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_10.n_261.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_10.n_261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_11.n_247.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_11.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_12.n_234.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_12.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_13.n_232.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_13.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_14.n_141.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_14.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_15.n_70.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_15.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_16.n_61.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_16.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_17.n_59.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_17.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_18.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_1.n_1477.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_1.n_1477.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_2.n_1127.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_2.n_1127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_3.n_793.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_3.n_793.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_4.n_674.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_4.n_674.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_5.n_412.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_5.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_6.n_394.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_6.n_394.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_7.n_370.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_7.n_370.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_8.n_335.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_8.n_335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_9.n_280.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_9.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_0.n_30.PWM.meme motif-alignments-all-vs-all/ZNF496/ZNF496-201-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_0.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all/ZNF496/ZNF496-201-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_1.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZNF496/ZNF496-201-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_2.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF496/ZNF496-201-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_0.n_9864.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_0.n_9864.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_10.n_107.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_10.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_11.n_93.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_11.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_12.n_85.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_12.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_13.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_14.n_49.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_14.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_15.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_1.n_1874.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_1.n_1874.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_2.n_587.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_2.n_587.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_3.n_581.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_3.n_581.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_4.n_337.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_4.n_337.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_5.n_314.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_5.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_7.n_188.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_7.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_8.n_184.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_8.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_9.n_113.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_9.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_0.n_2066.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_0.n_2066.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_10.n_136.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_10.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_11.n_110.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_11.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_12.n_103.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_12.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_13.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_14.n_61.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_14.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_15.n_43.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_15.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_17.n_21.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_2.n_1456.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_2.n_1456.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_3.n_484.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_3.n_484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_4.n_377.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_4.n_377.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_5.n_356.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_5.n_356.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_6.n_348.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_6.n_348.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_7.n_269.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_7.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_8.n_231.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_8.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_9.n_178.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_9.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_0.n_679.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_0.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_1.n_629.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_1.n_629.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_2.n_182.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_2.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_3.n_149.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_3.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_4.n_112.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_4.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_5.n_22.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_0.n_984.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_0.n_984.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_10.n_115.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_10.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_11.n_112.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_11.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_12.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_13.n_65.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_13.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_14.n_61.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_14.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_15.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_16.n_41.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_16.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_17.n_36.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_17.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_18.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_19.n_34.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_19.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_1.n_817.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_1.n_817.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_20.n_34.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_20.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_21.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_22.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_2.n_431.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_2.n_431.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_3.n_275.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_3.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_4.n_268.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_4.n_268.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_5.n_257.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_5.n_257.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_6.n_233.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_6.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_7.n_233.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_7.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_8.n_181.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_8.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_9.n_176.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_9.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_0.n_275.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_0.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_10.n_34.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_10.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_11.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_12.n_33.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_12.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_1.n_126.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_1.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_2.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_3.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_4.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_5.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_6.n_56.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_6.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_7.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_8.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_9.n_35.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_9.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_0.n_1393.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_0.n_1393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_1.n_188.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_1.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_2.n_72.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_2.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_3.n_68.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_3.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_4.n_41.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_4.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_5.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_6.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_0.n_279.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_0.n_279.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_10.n_66.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_10.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_11.n_49.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_11.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_12.n_49.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_12.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_13.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_14.n_29.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_14.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_15.n_27.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_15.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_16.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_17.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_18.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_1.n_248.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_1.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_2.n_198.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_2.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_3.n_140.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_3.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_4.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_5.n_86.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_5.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_6.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_7.n_76.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_7.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_8.n_74.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_8.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_9.n_71.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_9.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_0.n_9700.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_0.n_9700.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_1.n_1636.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_1.n_1636.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_2.n_1403.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_2.n_1403.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_3.n_1007.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_3.n_1007.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_4.n_466.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_4.n_466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_5.n_132.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_5.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_6.n_67.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_6.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_8.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_0.n_123.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_0.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_1.n_116.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_1.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_2.n_97.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_2.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_3.n_90.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_3.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_5.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_6.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_7.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_0.n_9700.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_0.n_9700.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_1.n_1636.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_1.n_1636.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_2.n_1403.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_2.n_1403.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_3.n_1007.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_3.n_1007.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_4.n_466.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_4.n_466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_5.n_132.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_5.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_6.n_67.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_6.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_8.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_0.n_123.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_0.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_1.n_116.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_1.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_2.n_97.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_2.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_3.n_90.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_3.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_5.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_6.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_7.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_0.n_4249.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_0.n_4249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_10.n_379.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_10.n_379.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_11.n_360.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_11.n_360.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_12.n_301.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_12.n_301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_13.n_234.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_13.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_14.n_201.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_14.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_15.n_146.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_15.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_16.n_125.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_16.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_17.n_71.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_17.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_18.n_49.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_18.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_19.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_1.n_3027.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_1.n_3027.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_20.n_24.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_20.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_21.n_23.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_21.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_2.n_2126.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_2.n_2126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_3.n_1972.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_3.n_1972.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_4.n_1915.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_4.n_1915.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_5.n_1046.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_5.n_1046.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_6.n_756.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_6.n_756.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_7.n_551.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_7.n_551.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_8.n_419.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_8.n_419.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_9.n_411.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_9.n_411.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_0.n_1721.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_0.n_1721.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_11.n_40.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_11.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_12.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_1.n_840.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_1.n_840.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_2.n_228.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_2.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_3.n_159.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_3.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_4.n_153.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_4.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_5.n_111.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_5.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_6.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_8.n_58.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_8.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_9.n_48.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_9.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_10.n_338.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_10.n_338.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_11.n_272.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_11.n_272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_12.n_228.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_12.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_13.n_225.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_13.n_225.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_14.n_219.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_14.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_15.n_209.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_15.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_16.n_203.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_16.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_17.n_182.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_17.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_18.n_124.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_18.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_19.n_66.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_19.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_1.n_2211.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_1.n_2211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_2.n_1051.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_2.n_1051.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_3.n_893.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_3.n_893.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_4.n_753.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_4.n_753.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_5.n_518.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_5.n_518.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_6.n_418.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_6.n_418.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_7.n_369.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_7.n_369.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_8.n_355.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_8.n_355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_9.n_355.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_9.n_355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_0.n_139.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_0.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_10.n_40.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_10.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_11.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_12.n_37.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_12.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_13.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_14.n_28.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_14.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_15.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_15.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_1.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_2.n_100.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_2.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_3.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_4.n_90.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_4.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_5.n_90.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_5.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_6.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_7.n_70.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_7.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_8.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_9.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_10.n_338.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_10.n_338.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_11.n_272.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_11.n_272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_12.n_228.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_12.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_13.n_225.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_13.n_225.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_14.n_219.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_14.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_15.n_209.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_15.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_16.n_203.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_16.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_17.n_182.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_17.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_18.n_124.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_18.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_19.n_66.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_19.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_1.n_2211.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_1.n_2211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_2.n_1051.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_2.n_1051.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_3.n_893.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_3.n_893.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_4.n_753.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_4.n_753.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_5.n_518.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_5.n_518.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_6.n_418.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_6.n_418.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_7.n_369.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_7.n_369.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_8.n_355.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_8.n_355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_9.n_355.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_9.n_355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_0.n_139.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_0.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_10.n_40.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_10.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_11.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_12.n_37.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_12.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_13.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_14.n_28.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_14.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_15.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_15.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_1.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_2.n_100.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_2.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_3.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_4.n_90.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_4.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_5.n_90.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_5.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_6.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_7.n_70.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_7.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_8.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_9.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_0.n_22088.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_0.n_22088.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_1.n_434.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_1.n_434.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_2.n_393.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_2.n_393.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_4.n_225.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_4.n_225.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_0.n_15899.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_0.n_15899.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_10.n_184.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_10.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_11.n_176.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_11.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_12.n_131.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_12.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_13.n_117.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_13.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_14.n_114.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_14.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_15.n_110.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_15.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_16.n_72.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_16.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_17.n_71.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_17.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_18.n_66.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_18.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_19.n_39.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_19.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_1.n_1231.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_1.n_1231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_20.n_28.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_20.n_28.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_3.n_744.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_3.n_744.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_9.n_189.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_9.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_0.n_18117.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_0.n_18117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_10.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_11.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_12.n_30.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_12.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_1.n_661.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_1.n_661.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_2.n_577.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_2.n_577.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_3.n_359.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_3.n_359.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_4.n_193.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_4.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_5.n_145.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_5.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_6.n_125.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_6.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_7.n_78.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_7.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_8.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_9.n_44.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_9.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_0.n_22587.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_0.n_22587.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_10.n_158.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_10.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_11.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_12.n_114.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_12.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_13.n_106.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_13.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_14.n_95.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_14.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_15.n_91.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_15.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_16.n_82.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_16.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_17.n_50.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_17.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_18.n_40.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_18.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_19.n_37.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_19.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_1.n_673.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_1.n_673.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_20.n_35.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_20.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_21.n_29.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_21.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_22.n_25.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_22.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_23.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_2.n_540.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_2.n_540.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_3.n_494.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_3.n_494.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_4.n_357.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_4.n_357.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_5.n_233.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_5.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_6.n_199.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_6.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_7.n_194.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_7.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_8.n_184.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_8.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_9.n_183.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_9.n_183.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_10.n_66.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_10.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_11.n_28.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_11.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_12.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_1.n_654.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_1.n_654.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_4.n_223.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_7.n_135.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_7.n_135.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_1.n_1335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_2.n_1119.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_2.n_1119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_3.n_306.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_3.n_306.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_4.n_283.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_4.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_5.n_237.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_5.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_6.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_7.n_85.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_7.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_8.n_79.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_8.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_9.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_0.n_3053.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_0.n_3053.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_10.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_11.n_146.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_11.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_12.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_13.n_89.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_13.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_14.n_88.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_14.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_15.n_81.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_15.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_16.n_59.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_16.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_17.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_18.n_26.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_18.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_19.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_1.n_2638.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_1.n_2638.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_2.n_2543.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_2.n_2543.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_3.n_469.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_3.n_469.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_4.n_323.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_4.n_323.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_5.n_289.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_5.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_6.n_276.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_6.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_7.n_262.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_7.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_8.n_219.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_8.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_9.n_173.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_9.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_10.n_208.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_10.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_11.n_163.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_11.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_12.n_138.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_12.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_13.n_128.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_13.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_14.n_97.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_14.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_16.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_17.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_1.n_3594.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_1.n_3594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_2.n_2076.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_2.n_2076.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_3.n_1938.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_3.n_1938.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_4.n_1634.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_4.n_1634.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_5.n_1580.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_5.n_1580.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_6.n_1418.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_6.n_1418.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_7.n_973.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_7.n_973.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_8.n_870.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_8.n_870.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_9.n_329.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_9.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_0.n_5280.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_0.n_5280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_10.n_191.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_10.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_11.n_128.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_11.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_12.n_90.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_12.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_13.n_60.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_13.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_14.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_15.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_16.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_17.n_24.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_17.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_18.n_23.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_18.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_19.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_1.n_1062.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_1.n_1062.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_2.n_939.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_2.n_939.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_3.n_933.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_3.n_933.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_4.n_756.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_4.n_756.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_5.n_668.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_5.n_668.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_6.n_668.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_6.n_668.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_7.n_393.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_7.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_8.n_341.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_8.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_9.n_270.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_9.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_10.n_208.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_10.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_11.n_163.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_11.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_12.n_138.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_12.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_13.n_128.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_13.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_14.n_97.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_14.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_16.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_17.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_1.n_3594.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_1.n_3594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_2.n_2076.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_2.n_2076.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_3.n_1938.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_3.n_1938.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_4.n_1634.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_4.n_1634.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_5.n_1580.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_5.n_1580.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_6.n_1418.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_6.n_1418.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_7.n_973.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_7.n_973.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_8.n_870.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_8.n_870.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_9.n_329.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_9.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_0.n_5280.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_0.n_5280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_10.n_191.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_10.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_11.n_128.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_11.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_12.n_90.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_12.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_13.n_60.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_13.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_14.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_15.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_16.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_17.n_24.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_17.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_18.n_23.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_18.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_19.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_1.n_1062.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_1.n_1062.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_2.n_939.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_2.n_939.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_3.n_933.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_3.n_933.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_4.n_756.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_4.n_756.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_5.n_668.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_5.n_668.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_6.n_668.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_6.n_668.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_7.n_393.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_7.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_8.n_341.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_8.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_9.n_270.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_9.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_0.n_6437.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_0.n_6437.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_10.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_1.n_3095.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_1.n_3095.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_2.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_3.n_286.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_3.n_286.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_4.n_271.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_4.n_271.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_5.n_181.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_5.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_6.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_7.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_8.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_9.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_0.n_269.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_0.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_10.n_81.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_10.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_11.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_12.n_58.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_12.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_13.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_14.n_54.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_14.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_15.n_51.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_15.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_16.n_51.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_16.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_17.n_37.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_17.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_18.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_19.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_1.n_120.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_1.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_20.n_23.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_20.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_2.n_115.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_2.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_3.n_114.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_3.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_4.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_5.n_107.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_5.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_6.n_99.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_6.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_7.n_90.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_7.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_8.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_9.n_83.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_9.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_0.n_237.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_0.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_10.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_1.n_188.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_1.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_2.n_151.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_2.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_3.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_4.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_5.n_49.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_5.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_6.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_7.n_33.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_7.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_8.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_9.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_0.n_3696.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_0.n_3696.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_10.n_379.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_10.n_379.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_11.n_265.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_11.n_265.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_12.n_180.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_12.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_13.n_62.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_13.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_14.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_15.n_48.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_15.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_16.n_39.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_16.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_17.n_35.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_17.n_35.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_19.n_30.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_19.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_1.n_2996.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_1.n_2996.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_20.n_26.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_20.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_2.n_2377.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_2.n_2377.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_3.n_1151.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_3.n_1151.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_10.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_11.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_12.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_13.n_36.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_13.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_14.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_1.n_133.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_1.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_2.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_3.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_4.n_76.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_4.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_5.n_68.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_5.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_6.n_62.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_6.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_7.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_8.n_48.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_8.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_9.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_0.n_566.PWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_0.n_566.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_1.n_355.PWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_1.n_355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_2.n_203.PWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_2.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_3.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_4.n_50.PWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_4.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_0.n_1701.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_0.n_1701.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_2.n_440.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_2.n_440.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_3.n_308.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_3.n_308.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_4.n_209.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_4.n_209.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_6.n_67.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_6.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_7.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_8.n_44.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_8.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_0.n_1732.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_0.n_1732.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_10.n_309.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_10.n_309.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_11.n_251.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_11.n_251.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_12.n_210.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_12.n_210.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_17.n_62.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_17.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_18.n_46.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_18.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_19.n_43.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_19.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_1.n_1510.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_1.n_1510.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_20.n_38.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_20.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_21.n_33.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_21.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_22.n_21.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_22.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_23.n_20.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_23.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_2.n_1340.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_2.n_1340.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_3.n_1104.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_3.n_1104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_4.n_715.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_4.n_715.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_5.n_637.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_5.n_637.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_6.n_621.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_6.n_621.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_7.n_504.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_7.n_504.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_8.n_457.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_8.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_9.n_380.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_9.n_380.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_0.n_1155.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_0.n_1155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_10.n_227.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_10.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_11.n_155.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_11.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_12.n_114.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_12.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_13.n_110.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_13.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_14.n_81.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_14.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_15.n_78.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_15.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_16.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_1.n_1115.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_1.n_1115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_2.n_398.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_2.n_398.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_3.n_389.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_3.n_389.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_4.n_377.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_4.n_377.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_5.n_328.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_5.n_328.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_6.n_303.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_6.n_303.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_7.n_276.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_7.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_8.n_229.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_8.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_9.n_228.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_9.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_0.n_1805.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_0.n_1805.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_10.n_261.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_10.n_261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_11.n_228.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_11.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_12.n_183.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_12.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_13.n_182.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_13.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_14.n_175.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_14.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_15.n_165.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_15.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_16.n_109.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_16.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_17.n_87.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_17.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_18.n_85.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_18.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_19.n_80.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_19.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_1.n_1751.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_1.n_1751.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_20.n_72.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_20.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_21.n_52.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_21.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_22.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_23.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_2.n_1198.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_2.n_1198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_3.n_479.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_3.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_4.n_447.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_4.n_447.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_5.n_399.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_5.n_399.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_6.n_383.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_6.n_383.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_7.n_331.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_7.n_331.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_8.n_294.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_8.n_294.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_9.n_270.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_9.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_10.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_11.n_28.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_11.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_12.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_13.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_1.n_2196.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_1.n_2196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_2.n_1778.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_2.n_1778.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_3.n_1570.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_3.n_1570.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_4.n_1063.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_4.n_1063.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_5.n_856.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_5.n_856.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_6.n_779.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_6.n_779.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_7.n_143.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_7.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_8.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_9.n_48.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_9.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_10.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_11.n_28.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_11.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_12.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_13.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_1.n_2196.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_1.n_2196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_2.n_1778.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_2.n_1778.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_3.n_1570.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_3.n_1570.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_4.n_1063.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_4.n_1063.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_5.n_856.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_5.n_856.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_6.n_779.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_6.n_779.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_7.n_143.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_7.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_8.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_9.n_48.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_9.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_0.n_1228.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_0.n_1228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_10.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_11.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_12.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_1.n_1194.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_1.n_1194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_2.n_965.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_2.n_965.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_3.n_791.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_3.n_791.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_4.n_157.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_4.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_5.n_154.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_5.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_6.n_122.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_6.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_7.n_74.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_7.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_8.n_62.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_8.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_9.n_58.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_9.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_0.n_8846.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_0.n_8846.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_10.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_1.n_7397.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_1.n_7397.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_2.n_1127.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_2.n_1127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_3.n_635.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_3.n_635.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_4.n_246.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_4.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_5.n_164.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_5.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_6.n_144.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_6.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_7.n_119.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_7.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_8.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_9.n_75.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_9.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_0.n_2271.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_0.n_2271.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_1.n_443.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_1.n_443.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_2.n_159.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_2.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_3.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_4.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_5.n_124.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_5.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_6.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_7.n_97.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_7.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_8.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_0.n_925.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_0.n_925.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_10.n_37.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_10.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_1.n_255.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_1.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_2.n_252.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_2.n_252.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_3.n_209.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_3.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_4.n_144.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_4.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_5.n_122.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_5.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_6.n_119.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_6.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_7.n_93.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_7.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_8.n_64.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_8.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_9.n_40.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_9.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_0.n_1028.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_0.n_1028.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_1.n_963.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_1.n_963.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_2.n_219.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_2.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_3.n_121.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_3.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_4.n_98.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_4.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_5.n_86.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_5.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_6.n_83.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_6.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_7.n_78.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_7.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_8.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_9.n_45.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_9.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_0.n_2478.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_0.n_2478.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_10.n_231.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_10.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_11.n_194.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_11.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_12.n_126.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_12.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_13.n_104.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_13.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_14.n_85.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_14.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_15.n_55.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_15.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_1.n_1020.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_1.n_1020.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_2.n_880.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_2.n_880.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_3.n_510.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_3.n_510.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_4.n_452.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_4.n_452.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_5.n_432.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_5.n_432.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_6.n_335.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_6.n_335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_7.n_306.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_7.n_306.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_8.n_272.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_8.n_272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_9.n_269.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_9.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_0.n_99.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_0.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_10.n_37.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_10.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_1.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_2.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_3.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_4.n_55.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_4.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_5.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_6.n_48.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_6.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_7.n_47.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_7.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_8.n_43.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_8.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_9.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_0.n_520.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_0.n_520.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_10.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_11.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_12.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_1.n_206.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_1.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_2.n_179.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_2.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_3.n_134.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_3.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_4.n_69.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_4.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_6.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_7.n_48.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_7.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_8.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_9.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_0.n_15888.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_0.n_15888.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_1.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_2.n_71.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_2.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_3.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_4.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_5.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_7.n_26.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_7.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_8.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_0.n_567.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_0.n_567.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_10.n_186.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_10.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_11.n_179.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_11.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_12.n_176.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_12.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_13.n_166.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_13.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_14.n_159.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_14.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_15.n_159.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_15.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_16.n_141.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_16.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_17.n_132.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_17.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_18.n_128.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_18.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_19.n_121.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_19.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_1.n_566.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_1.n_566.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_20.n_118.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_20.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_21.n_77.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_21.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_22.n_67.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_22.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_23.n_58.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_23.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_24.n_35.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_24.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_2.n_553.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_2.n_553.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_3.n_442.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_3.n_442.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_4.n_352.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_4.n_352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_5.n_294.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_5.n_294.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_6.n_252.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_6.n_252.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_7.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_8.n_205.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_8.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_9.n_197.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_9.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_0.n_567.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_0.n_567.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_10.n_186.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_10.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_11.n_179.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_11.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_12.n_176.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_12.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_13.n_166.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_13.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_14.n_159.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_14.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_15.n_159.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_15.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_16.n_141.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_16.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_17.n_132.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_17.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_18.n_128.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_18.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_19.n_121.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_19.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_1.n_566.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_1.n_566.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_20.n_118.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_20.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_21.n_77.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_21.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_22.n_67.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_22.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_23.n_58.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_23.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_24.n_35.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_24.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_2.n_553.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_2.n_553.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_3.n_442.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_3.n_442.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_4.n_352.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_4.n_352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_5.n_294.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_5.n_294.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_6.n_252.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_6.n_252.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_7.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_8.n_205.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_8.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_9.n_197.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_9.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_0.n_4053.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_0.n_4053.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_10.n_348.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_10.n_348.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_11.n_246.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_11.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_12.n_206.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_12.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_13.n_203.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_13.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_14.n_146.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_14.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_15.n_129.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_15.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_16.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_17.n_39.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_17.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_1.n_2390.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_1.n_2390.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_2.n_1588.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_2.n_1588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_3.n_1275.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_3.n_1275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_4.n_1083.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_4.n_1083.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_5.n_712.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_5.n_712.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_6.n_646.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_6.n_646.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_7.n_388.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_7.n_388.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_8.n_383.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_8.n_383.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_9.n_380.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_9.n_380.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_0.n_3456.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_0.n_3456.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_1.n_706.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_1.n_706.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_2.n_706.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_2.n_706.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_3.n_388.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_3.n_388.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_4.n_199.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_4.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_5.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_7.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_0.n_150.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_0.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_10.n_39.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_10.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_11.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_12.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_14.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_15.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_1.n_86.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_1.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_2.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_3.n_64.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_3.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_4.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_5.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_6.n_56.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_6.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_7.n_48.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_7.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_8.n_44.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_8.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_9.n_40.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_9.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_0.n_17315.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_0.n_17315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_10.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_11.n_27.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_11.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_12.n_27.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_12.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_1.n_3111.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_1.n_3111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_2.n_2525.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_2.n_2525.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_3.n_986.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_3.n_986.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_4.n_186.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_4.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_5.n_175.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_5.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_6.n_143.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_6.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_7.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_8.n_113.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_8.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_9.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_0.n_14917.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_0.n_14917.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_10.n_168.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_10.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_11.n_150.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_11.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_12.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_13.n_112.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_13.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_14.n_58.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_14.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_15.n_43.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_15.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_1.n_4092.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_1.n_4092.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_2.n_1877.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_2.n_1877.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_3.n_1708.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_3.n_1708.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_4.n_538.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_4.n_538.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_5.n_398.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_5.n_398.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_6.n_369.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_6.n_369.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_7.n_313.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_7.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_8.n_248.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_8.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_9.n_197.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_9.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_0.n_2603.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_0.n_2603.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_1.n_708.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_1.n_708.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_2.n_674.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_2.n_674.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_3.n_355.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_3.n_355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_4.n_273.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_4.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_5.n_168.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_5.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_6.n_90.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_6.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_7.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_8.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_0.n_9508.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_0.n_9508.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_10.n_136.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_10.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_11.n_91.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_11.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_12.n_90.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_12.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_13.n_67.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_13.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_14.n_62.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_14.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_15.n_52.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_15.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_16.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_17.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_1.n_1815.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_1.n_1815.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_2.n_647.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_2.n_647.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_3.n_560.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_3.n_560.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_4.n_344.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_4.n_344.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_5.n_244.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_5.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_6.n_203.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_6.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_7.n_196.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_7.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_8.n_195.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_8.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_9.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_0.n_3644.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_0.n_3644.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_10.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_11.n_31.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_11.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_12.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_13.n_26.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_13.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_14.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_15.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_1.n_1389.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_1.n_1389.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_2.n_192.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_2.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_3.n_109.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_3.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_4.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_5.n_85.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_5.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_6.n_83.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_6.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_7.n_64.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_7.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_8.n_53.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_8.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_9.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HEK336-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HEK336-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_1.n_804.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_1.n_804.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_2.n_320.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_2.n_320.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_3.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_4.n_107.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_4.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_5.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_6.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HEK336-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HEK336-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_1.n_804.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_1.n_804.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_2.n_320.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_2.n_320.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_4.n_107.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_4.n_107.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_9.n_236.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_9.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_0.n_17014.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_0.n_17014.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_10.n_91.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_10.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_11.n_80.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_11.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_12.n_77.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_12.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_13.n_68.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_13.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_14.n_68.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_14.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_15.n_60.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_15.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_16.n_39.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_16.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_17.n_31.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_17.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_18.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_19.n_23.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_19.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_1.n_1133.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_1.n_1133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_2.n_686.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_2.n_686.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_3.n_395.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_3.n_395.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_4.n_371.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_4.n_371.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_5.n_341.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_5.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_6.n_289.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_6.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_7.n_284.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_7.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_8.n_238.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_8.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_9.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_0.n_2181.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_0.n_2181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_10.n_128.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_10.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_11.n_101.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_11.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_12.n_100.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_12.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_13.n_77.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_13.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_14.n_76.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_14.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_15.n_66.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_15.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_16.n_57.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_16.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_17.n_48.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_17.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_18.n_47.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_18.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_19.n_43.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_19.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_1.n_689.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_1.n_689.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_20.n_34.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_20.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_21.n_29.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_21.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_22.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_23.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_24.n_27.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_24.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_25.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_26.n_24.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_26.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_27.n_24.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_27.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_2.n_392.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_2.n_392.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_3.n_361.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_3.n_361.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_4.n_203.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_4.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_5.n_181.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_5.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_6.n_174.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_6.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_7.n_162.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_7.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_8.n_158.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_8.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_9.n_155.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_9.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_0.n_2841.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_0.n_2841.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_10.n_193.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_10.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_11.n_177.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_11.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_12.n_155.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_12.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_13.n_112.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_13.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_14.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_15.n_93.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_15.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_16.n_89.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_16.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_17.n_86.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_17.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_18.n_71.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_18.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_19.n_68.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_19.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_1.n_1007.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_1.n_1007.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_20.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_21.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_22.n_26.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_22.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_23.n_21.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_23.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_2.n_994.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_2.n_994.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_3.n_914.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_3.n_914.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_4.n_665.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_4.n_665.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_5.n_564.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_5.n_564.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_6.n_444.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_6.n_444.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_7.n_421.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_7.n_421.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_8.n_407.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_8.n_407.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_9.n_213.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_9.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_0.n_388.PWM.meme motif-alignments-all-vs-all/ZNF280C/ZNF280C-201-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_0.n_388.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_1.n_161.PWM.meme motif-alignments-all-vs-all/ZNF280C/ZNF280C-201-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_1.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF280C/ZNF280C-201-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_2.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF280C/ZNF280C-201-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_3.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_0.n_1430.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_0.n_1430.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_10.n_195.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_10.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_11.n_187.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_11.n_187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_12.n_176.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_12.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_13.n_168.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_13.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_14.n_154.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_14.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_15.n_148.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_15.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_16.n_138.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_16.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_17.n_127.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_17.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_18.n_124.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_18.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_19.n_112.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_19.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_1.n_1257.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_1.n_1257.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_20.n_63.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_20.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_21.n_56.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_21.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_22.n_52.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_22.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_23.n_48.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_23.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_24.n_42.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_24.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_25.n_35.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_25.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_26.n_30.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_26.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_27.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_2.n_1239.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_2.n_1239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_3.n_820.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_3.n_820.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_4.n_503.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_4.n_503.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_5.n_285.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_5.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_6.n_284.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_6.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_7.n_261.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_7.n_261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_8.n_216.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_8.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_9.n_204.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_9.n_204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_0.n_431.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_0.n_431.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_10.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_11.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_12.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_1.n_180.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_1.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_2.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_3.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_4.n_57.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_4.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_5.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_6.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_7.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_8.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_9.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_13.n_125.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_13.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_14.n_119.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_14.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_15.n_115.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_15.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_16.n_104.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_16.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_17.n_103.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_17.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_18.n_102.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_18.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_19.n_87.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_19.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_1.n_362.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_1.n_362.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_20.n_87.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_20.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_21.n_86.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_21.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_22.n_62.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_22.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_23.n_60.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_23.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_24.n_58.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_24.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_25.n_49.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_25.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_26.n_47.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_26.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_27.n_44.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_27.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_28.n_42.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_28.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_29.n_38.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_29.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_2.n_345.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_2.n_345.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_30.n_38.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_30.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_31.n_36.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_31.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_32.n_32.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_32.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_33.n_31.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_33.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_34.n_31.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_34.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_35.n_30.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_35.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_36.n_24.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_36.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_37.n_22.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_37.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_38.n_22.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_38.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_39.n_20.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_39.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_3.n_341.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_3.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_40.n_20.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_40.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_4.n_337.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_4.n_337.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_5.n_223.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_5.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_6.n_179.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_6.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_7.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_8.n_158.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_8.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_9.n_154.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_9.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_0.n_6064.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_0.n_6064.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_10.n_338.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_10.n_338.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_11.n_331.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_11.n_331.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_12.n_311.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_12.n_311.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_13.n_269.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_13.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_14.n_267.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_14.n_267.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_15.n_256.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_15.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_16.n_246.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_16.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_17.n_234.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_17.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_18.n_231.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_18.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_19.n_210.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_19.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_1.n_1895.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_1.n_1895.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_20.n_175.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_20.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_21.n_170.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_21.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_22.n_163.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_22.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_23.n_143.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_23.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_24.n_132.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_24.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_25.n_129.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_25.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_26.n_125.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_26.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_27.n_114.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_27.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_28.n_106.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_28.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_29.n_100.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_29.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_2.n_1064.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_2.n_1064.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_30.n_99.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_30.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_31.n_94.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_31.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_32.n_81.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_32.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_33.n_79.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_33.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_34.n_74.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_34.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_35.n_73.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_35.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_36.n_60.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_36.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_37.n_59.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_37.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_38.n_54.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_38.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_39.n_51.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_39.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_3.n_1025.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_3.n_1025.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_40.n_34.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_40.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_41.n_28.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_41.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_42.n_27.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_42.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_43.n_27.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_43.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_44.n_23.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_44.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_4.n_1018.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_4.n_1018.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_5.n_711.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_5.n_711.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_6.n_700.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_6.n_700.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_7.n_521.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_7.n_521.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_8.n_461.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_8.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_9.n_384.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_9.n_384.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_0.n_72.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_0.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_10.n_36.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_10.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_11.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_12.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_13.n_28.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_13.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_14.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_1.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_2.n_60.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_2.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_3.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_4.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_5.n_50.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_5.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_6.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_7.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_8.n_44.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_8.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_9.n_41.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_9.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_11.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_12.n_46.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_12.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_13.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_14.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_15.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_16.n_31.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_16.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_17.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_18.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_1.n_199.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_1.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_2.n_152.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_2.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_3.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_4.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_5.n_78.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_5.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_6.n_78.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_6.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_7.n_74.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_7.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_8.n_72.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_8.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_11.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_12.n_46.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_12.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_13.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_14.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_15.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_16.n_31.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_16.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_17.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_18.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_1.n_199.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_1.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_2.n_152.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_2.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_3.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_4.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_5.n_78.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_5.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_6.n_78.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_6.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_7.n_74.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_7.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_8.n_72.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_8.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_0.n_2516.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_0.n_2516.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_10.n_277.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_10.n_277.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_11.n_243.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_11.n_243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_12.n_207.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_12.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_13.n_95.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_13.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_14.n_88.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_14.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_15.n_85.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_15.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_16.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_1.n_1300.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_1.n_1300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_2.n_1145.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_2.n_1145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_3.n_1140.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_3.n_1140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_4.n_1021.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_4.n_1021.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_5.n_710.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_5.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_6.n_560.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_6.n_560.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_7.n_508.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_7.n_508.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_8.n_374.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_8.n_374.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_9.n_311.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_9.n_311.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_0.n_6169.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_0.n_6169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_10.n_200.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_10.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_11.n_169.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_11.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_12.n_165.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_12.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_13.n_115.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_13.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_14.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_15.n_75.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_15.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_16.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_1.n_4230.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_1.n_4230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_2.n_2612.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_2.n_2612.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_3.n_2353.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_3.n_2353.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_4.n_2223.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_4.n_2223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_5.n_2137.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_5.n_2137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_6.n_658.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_6.n_658.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_7.n_449.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_7.n_449.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_8.n_429.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_8.n_429.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_9.n_260.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_9.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_0.n_172.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_0.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_10.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_1.n_85.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_1.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_2.n_81.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_2.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_3.n_81.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_3.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_4.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_5.n_67.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_5.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_6.n_52.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_6.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_7.n_48.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_7.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_8.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_0.n_2238.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_0.n_2238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_10.n_215.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_10.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_11.n_117.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_11.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_12.n_57.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_12.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_13.n_57.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_13.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_14.n_56.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_14.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_1.n_1186.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_1.n_1186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_2.n_855.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_2.n_855.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_3.n_706.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_3.n_706.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_4.n_620.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_4.n_620.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_5.n_544.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_5.n_544.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_6.n_335.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_6.n_335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_7.n_307.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_7.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_8.n_293.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_8.n_293.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_9.n_251.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_9.n_251.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_0.n_243.PWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_0.n_243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_1.n_165.PWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_1.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_2.n_87.PWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_2.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_3.n_81.PWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_3.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_4.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_6.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_0.n_3441.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_0.n_3441.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_10.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_11.n_34.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_11.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_12.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_14.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_1.n_1269.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_1.n_1269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_2.n_1092.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_2.n_1092.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_3.n_664.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_3.n_664.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_4.n_367.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_4.n_367.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_6.n_162.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_6.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_7.n_76.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_7.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_8.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_9.n_61.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_9.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_0.n_5462.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_0.n_5462.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_10.n_305.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_10.n_305.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_11.n_228.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_11.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_12.n_218.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_12.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_13.n_161.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_13.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_14.n_146.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_14.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_15.n_142.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_15.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_16.n_128.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_16.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_17.n_97.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_17.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_18.n_77.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_18.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_19.n_69.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_19.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_1.n_4127.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_1.n_4127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_20.n_65.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_20.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_21.n_61.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_21.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_22.n_47.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_22.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_23.n_40.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_23.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_24.n_29.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_24.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_25.n_28.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_25.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_26.n_28.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_26.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_27.n_26.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_27.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_2.n_3013.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_2.n_3013.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_3.n_2776.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_3.n_2776.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_4.n_2639.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_4.n_2639.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_5.n_2062.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_5.n_2062.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_6.n_1060.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_6.n_1060.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_7.n_586.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_7.n_586.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_8.n_388.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_8.n_388.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_9.n_308.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_9.n_308.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_0.n_69.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_0.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_1.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_2.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_3.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_4.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_5.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_6.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_7.n_26.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_7.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_8.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_0.n_1431.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_0.n_1431.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_10.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_11.n_78.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_11.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_12.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_13.n_74.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_13.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_14.n_54.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_14.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_15.n_38.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_15.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_16.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_17.n_33.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_17.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_1.n_563.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_1.n_563.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_2.n_198.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_2.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_3.n_159.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_3.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_4.n_118.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_4.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_5.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_6.n_100.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_6.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_7.n_100.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_7.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_8.n_97.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_8.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_9.n_93.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_9.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_0.n_7643.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_0.n_7643.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_10.n_118.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_10.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_11.n_87.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_11.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_12.n_65.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_12.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_13.n_53.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_13.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_14.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_1.n_1439.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_1.n_1439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_2.n_1122.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_2.n_1122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_3.n_535.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_3.n_535.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_4.n_398.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_4.n_398.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_5.n_363.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_5.n_363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_6.n_355.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_6.n_355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_7.n_349.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_7.n_349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_8.n_214.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_8.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_9.n_214.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_9.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK542-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK542-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK542-Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK542-Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_0.n_299.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_0.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_10.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_1.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_2.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_3.n_60.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_3.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_4.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_5.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_6.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_7.n_33.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_7.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_8.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_9.n_31.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_9.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_0.n_21524.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_0.n_21524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_10.n_51.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_10.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_11.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_12.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_13.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_14.n_24.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_14.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_1.n_3965.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_1.n_3965.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_2.n_1886.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_2.n_1886.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_3.n_1410.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_3.n_1410.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_4.n_378.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_4.n_378.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_5.n_321.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_5.n_321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_6.n_240.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_6.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_7.n_224.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_7.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_8.n_127.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_8.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_0.n_1738.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_0.n_1738.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_10.n_379.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_10.n_379.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_11.n_308.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_11.n_308.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_12.n_257.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_12.n_257.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_13.n_92.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_13.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_14.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_15.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_16.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_1.n_1617.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_1.n_1617.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_2.n_1012.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_2.n_1012.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_3.n_1011.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_3.n_1011.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_4.n_829.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_4.n_829.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_5.n_549.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_5.n_549.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_6.n_508.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_6.n_508.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_7.n_472.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_7.n_472.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_8.n_405.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_8.n_405.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_9.n_393.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_9.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_0.n_2455.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_0.n_2455.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_10.n_431.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_10.n_431.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_11.n_314.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_11.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_12.n_311.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_12.n_311.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_13.n_303.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_13.n_303.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_14.n_208.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_14.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_15.n_168.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_15.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_16.n_163.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_16.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_17.n_146.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_17.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_18.n_143.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_18.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_19.n_143.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_19.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_1.n_1316.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_1.n_1316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_20.n_116.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_20.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_21.n_102.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_21.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_22.n_82.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_22.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_23.n_68.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_23.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_24.n_44.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_24.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_25.n_33.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_25.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_26.n_30.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_26.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_2.n_1146.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_2.n_1146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_3.n_1116.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_3.n_1116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_4.n_921.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_4.n_921.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_5.n_735.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_5.n_735.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_6.n_708.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_6.n_708.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_7.n_637.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_7.n_637.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_8.n_592.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_8.n_592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_9.n_502.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_9.n_502.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_0.n_2352.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_0.n_2352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_10.n_198.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_10.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_11.n_197.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_11.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_12.n_71.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_12.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_13.n_43.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_13.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_1.n_798.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_1.n_798.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_2.n_715.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_2.n_715.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_3.n_676.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_3.n_676.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_4.n_527.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_4.n_527.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_5.n_361.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_5.n_361.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_6.n_285.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_6.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_7.n_285.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_7.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_8.n_255.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_8.n_255.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_12.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_13.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_14.n_29.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_14.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_15.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_16.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_1.n_142.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_1.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_2.n_136.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_2.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_3.n_132.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_3.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_4.n_122.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_4.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_5.n_117.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_5.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_6.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_7.n_86.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_7.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_8.n_72.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_8.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_9.n_63.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_9.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_0.n_1466.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_0.n_1466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_10.n_135.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_10.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_11.n_97.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_11.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_12.n_87.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_12.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_13.n_77.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_13.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_14.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_15.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_1.n_886.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_1.n_886.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_2.n_886.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_2.n_886.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_3.n_677.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_3.n_677.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_4.n_407.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_4.n_407.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_5.n_292.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_5.n_292.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_6.n_286.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_6.n_286.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_7.n_186.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_7.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_8.n_159.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_8.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_9.n_139.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_9.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_0.n_9564.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_0.n_9564.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_10.n_281.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_10.n_281.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_11.n_170.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_11.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_12.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_13.n_118.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_13.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_14.n_101.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_14.n_101.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_16.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_16.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_17.n_43.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_17.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_19.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_1.n_4518.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_1.n_4518.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_2.n_3801.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_2.n_3801.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_3.n_3137.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_3.n_3137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_4.n_1056.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_4.n_1056.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_5.n_608.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_5.n_608.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_6.n_599.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_6.n_599.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_7.n_475.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_7.n_475.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_8.n_387.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_8.n_387.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_9.n_302.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_9.n_302.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_0.n_663.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_0.n_663.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_10.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_10.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_11.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_11.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_12.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_12.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_13.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_13.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_14.n_77.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_16.n_64.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_16.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_17.n_54.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_21.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_22.n_30.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_12.n_20.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_2.n_37.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_12.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_12.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_13.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_13.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_14.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_15.n_66.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_15.n_66.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_17.n_54.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_19.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_19.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_1.n_450.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_1.n_450.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_6.n_123.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_6.n_123.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_8.n_89.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_8.n_89.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_10.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_11.n_36.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_11.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_1.n_352.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_1.n_352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_2.n_229.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_2.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_3.n_175.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_3.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_4.n_147.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_4.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_5.n_98.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_5.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_6.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_7.n_79.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_7.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_8.n_78.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_8.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_9.n_66.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_9.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HEK342-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HEK342-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_0.n_1331.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_0.n_1331.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_10.n_207.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_10.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_11.n_175.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_11.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_12.n_174.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_12.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_13.n_117.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_13.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_14.n_115.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_14.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_15.n_111.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_15.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_16.n_103.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_16.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_17.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_18.n_81.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_18.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_19.n_46.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_19.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_1.n_1180.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_1.n_1180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_20.n_45.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_20.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_21.n_34.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_21.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_22.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_23.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_2.n_912.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_2.n_912.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_3.n_469.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_3.n_469.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_4.n_346.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_4.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_5.n_294.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_5.n_294.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_6.n_257.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_6.n_257.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_1.n_4964.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_1.n_4964.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_2.n_121.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_2.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_3.n_96.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_3.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_0.n_11181.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_0.n_11181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_10.n_101.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_10.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_11.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_12.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_13.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_14.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_1.n_8703.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_1.n_8703.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_2.n_8515.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_2.n_8515.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_3.n_365.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_3.n_365.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_4.n_327.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_4.n_327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_5.n_295.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_5.n_295.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_6.n_266.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_6.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_7.n_220.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_7.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_8.n_130.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_8.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_9.n_119.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_9.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_0.n_1128.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_0.n_1128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_10.n_64.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_10.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_11.n_59.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_11.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_12.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_13.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_14.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_1.n_375.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_1.n_375.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_2.n_220.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_2.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_3.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_4.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_5.n_93.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_5.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_6.n_89.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_6.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_7.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_8.n_75.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_8.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_9.n_66.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_9.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_0.n_2123.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_0.n_2123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_10.n_158.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_10.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_11.n_118.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_11.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_12.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_13.n_53.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_13.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_14.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_15.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_1.n_1788.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_1.n_1788.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_2.n_515.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_2.n_515.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_3.n_449.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_3.n_449.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_4.n_423.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_4.n_423.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_5.n_373.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_5.n_373.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_6.n_342.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_6.n_342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_7.n_291.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_7.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_8.n_238.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_8.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_9.n_197.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_9.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_0.n_6959.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_0.n_6959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_10.n_545.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_10.n_545.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_11.n_416.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_11.n_416.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_12.n_373.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_12.n_373.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_13.n_338.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_13.n_338.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_14.n_256.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_14.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_15.n_243.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_15.n_243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_16.n_238.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_16.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_17.n_195.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_17.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_18.n_180.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_18.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_19.n_138.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_19.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_1.n_5053.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_1.n_5053.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_20.n_89.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_20.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_21.n_60.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_21.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_22.n_52.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_22.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_23.n_51.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_23.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_24.n_38.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_24.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_25.n_29.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_25.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_26.n_22.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_26.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_27.n_22.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_27.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_28.n_21.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_28.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_29.n_20.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_29.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_2.n_1959.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_2.n_1959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_30.n_20.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_30.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_3.n_1610.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_3.n_1610.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_4.n_1045.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_4.n_1045.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_5.n_979.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_5.n_979.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_6.n_971.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_6.n_971.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_7.n_959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_8.n_701.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_8.n_701.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_9.n_569.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_9.n_569.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_0.n_2636.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_0.n_2636.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_10.n_171.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_10.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_11.n_168.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_11.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_12.n_163.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_12.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_13.n_140.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_13.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_14.n_132.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_14.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_15.n_115.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_15.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_16.n_82.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_16.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_17.n_73.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_17.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_18.n_56.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_18.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_19.n_48.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_19.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_1.n_1637.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_1.n_1637.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_20.n_47.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_20.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_21.n_42.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_21.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_22.n_39.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_22.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_23.n_33.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_23.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_24.n_27.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_24.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_2.n_1329.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_2.n_1329.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_5.n_385.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_5.n_385.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_6.n_346.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_6.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_7.n_320.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_7.n_320.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_15.n_38.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_15.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_16.n_28.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_16.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_1.n_1875.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_1.n_1875.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_2.n_1648.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_2.n_1648.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_3.n_1074.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_3.n_1074.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_4.n_621.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_4.n_621.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_5.n_345.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_5.n_345.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_6.n_191.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_6.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_7.n_142.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_7.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_8.n_127.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_8.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_9.n_123.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_9.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK374-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK374-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK374-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK374-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_0.n_455.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_0.n_455.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_1.n_293.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_1.n_293.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_2.n_162.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_2.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_3.n_153.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_3.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_4.n_114.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_4.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_5.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_6.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_7.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_8.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_0.n_1680.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_0.n_1680.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_10.n_104.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_10.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_11.n_84.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_11.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_12.n_72.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_12.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_13.n_58.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_13.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_14.n_56.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_14.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_15.n_44.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_15.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_16.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_19.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_1.n_1275.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_1.n_1275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_2.n_935.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_2.n_935.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_3.n_777.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_3.n_777.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_4.n_591.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_4.n_591.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_5.n_553.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_5.n_553.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_6.n_445.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_6.n_445.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_7.n_445.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_7.n_445.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_8.n_396.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_8.n_396.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_9.n_146.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_9.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_0.n_1721.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_0.n_1721.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_10.n_408.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_10.n_408.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_11.n_278.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_11.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_12.n_231.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_12.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_13.n_231.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_13.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_14.n_215.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_14.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_15.n_202.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_15.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_16.n_143.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_16.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_17.n_143.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_17.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_18.n_117.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_18.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_19.n_61.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_19.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_1.n_1561.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_1.n_1561.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_20.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_21.n_48.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_21.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_22.n_42.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_22.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_23.n_33.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_23.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_24.n_22.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_24.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_2.n_982.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_2.n_982.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_3.n_860.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_3.n_860.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_4.n_804.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_4.n_804.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_5.n_560.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_5.n_560.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_6.n_559.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_6.n_559.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_7.n_541.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_7.n_541.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_8.n_528.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_8.n_528.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_9.n_460.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_9.n_460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_0.n_898.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_0.n_898.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_10.n_139.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_10.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_11.n_124.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_11.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_12.n_114.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_12.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_13.n_104.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_13.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_14.n_95.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_14.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_15.n_88.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_15.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_16.n_87.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_16.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_17.n_72.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_17.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_18.n_43.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_18.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_19.n_39.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_19.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_1.n_840.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_1.n_840.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_20.n_23.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_20.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_2.n_585.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_2.n_585.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_3.n_471.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_3.n_471.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_4.n_460.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_4.n_460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_5.n_325.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_5.n_325.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_6.n_249.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_6.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_7.n_189.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_7.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_8.n_156.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_8.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_9.n_143.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_9.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_0.n_1102.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_0.n_1102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_10.n_311.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_10.n_311.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_11.n_291.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_11.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_12.n_289.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_12.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_13.n_285.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_13.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_14.n_249.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_14.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_15.n_178.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_15.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_16.n_148.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_16.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_17.n_129.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_17.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_18.n_93.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_18.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_19.n_78.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_19.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_1.n_504.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_1.n_504.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_20.n_72.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_20.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_21.n_46.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_21.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_22.n_36.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_22.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_2.n_503.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_2.n_503.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_3.n_456.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_3.n_456.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_4.n_450.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_4.n_450.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_5.n_376.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_5.n_376.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_6.n_371.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_6.n_371.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_7.n_345.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_7.n_345.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_8.n_344.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_8.n_344.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_9.n_322.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_9.n_322.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_0.n_236.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_0.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_10.n_90.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_10.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_11.n_86.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_11.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_12.n_77.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_12.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_13.n_76.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_13.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_14.n_68.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_14.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_15.n_54.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_15.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_16.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_17.n_37.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_17.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_18.n_36.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_18.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_1.n_226.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_1.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_2.n_204.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_2.n_204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_3.n_165.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_3.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_4.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_5.n_146.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_5.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_6.n_123.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_6.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_7.n_116.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_7.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_8.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_9.n_93.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_9.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_0.n_13283.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_0.n_13283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_10.n_250.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_10.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_11.n_202.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_11.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_12.n_159.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_12.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_13.n_148.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_13.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_14.n_141.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_14.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_15.n_140.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_15.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_16.n_72.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_16.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_17.n_48.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_17.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_18.n_43.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_18.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_19.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_1.n_3334.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_1.n_3334.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_20.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_21.n_20.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_21.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_2.n_2250.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_2.n_2250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_3.n_2129.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_3.n_2129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_4.n_2111.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_4.n_2111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_5.n_724.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_5.n_724.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_6.n_632.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_6.n_632.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_7.n_404.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_7.n_404.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_8.n_327.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_8.n_327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_9.n_317.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_9.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_12.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_13.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_1.n_682.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_1.n_682.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_2.n_454.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_2.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_3.n_305.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_3.n_305.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_4.n_252.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_4.n_252.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_5.n_223.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_5.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_6.n_120.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_6.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_7.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_8.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_9.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_0.n_4280.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_0.n_4280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_11.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_1.n_3788.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_1.n_3788.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_2.n_3317.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_2.n_3317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_3.n_1741.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_3.n_1741.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_4.n_1336.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_4.n_1336.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_5.n_949.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_5.n_949.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_6.n_648.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_6.n_648.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_7.n_340.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_7.n_340.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_8.n_152.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_8.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_9.n_82.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_9.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_0.n_3352.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_0.n_3352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_10.n_194.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_10.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_11.n_175.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_11.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_12.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_13.n_30.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_13.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_1.n_2856.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_1.n_2856.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_2.n_1730.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_2.n_1730.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_3.n_998.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_3.n_998.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_4.n_328.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_4.n_328.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_5.n_328.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_5.n_328.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_6.n_260.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_6.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_7.n_249.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_7.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_8.n_243.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_8.n_243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_9.n_211.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_9.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_0.n_2275.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_0.n_2275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_10.n_44.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_10.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_1.n_409.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_1.n_409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_2.n_399.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_2.n_399.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_3.n_369.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_3.n_369.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_4.n_316.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_4.n_316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_5.n_304.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_5.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_6.n_259.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_6.n_259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_7.n_172.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_7.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_8.n_138.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_8.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_9.n_102.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_9.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_0.n_1224.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_0.n_1224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_10.n_28.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_10.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_1.n_345.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_1.n_345.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_2.n_114.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_2.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_3.n_101.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_3.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_4.n_75.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_4.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_5.n_72.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_5.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_6.n_56.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_6.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_7.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_9.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_0.n_6743.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_0.n_6743.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_10.n_192.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_10.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_11.n_164.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_11.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_12.n_160.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_12.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_13.n_134.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_13.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_14.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_15.n_94.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_15.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_16.n_82.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_16.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_17.n_67.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_17.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_18.n_50.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_18.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_19.n_37.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_19.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_1.n_3888.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_1.n_3888.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_20.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_21.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_22.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_2.n_895.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_2.n_895.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_3.n_564.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_3.n_564.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_4.n_393.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_4.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_5.n_349.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_5.n_349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_6.n_296.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_6.n_296.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_7.n_254.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_7.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_8.n_243.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_8.n_243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_9.n_227.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_9.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_0.n_3410.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_0.n_3410.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_10.n_82.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_10.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_11.n_52.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_11.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_12.n_52.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_12.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_13.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_14.n_36.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_14.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_15.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_16.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_1.n_1919.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_1.n_1919.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_2.n_1743.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_2.n_1743.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_3.n_602.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_3.n_602.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_4.n_586.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_4.n_586.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_5.n_506.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_5.n_506.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_6.n_406.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_6.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_7.n_301.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_7.n_301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_8.n_227.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_8.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_9.n_179.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_9.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_0.n_4068.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_0.n_4068.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_10.n_77.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_10.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_1.n_2129.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_1.n_2129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_2.n_1836.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_2.n_1836.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_3.n_1817.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_3.n_1817.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_4.n_851.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_4.n_851.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_5.n_601.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_5.n_601.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_6.n_469.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_6.n_469.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_7.n_248.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_7.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_8.n_211.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_8.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_9.n_117.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_9.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_0.n_5245.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_0.n_5245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_10.n_390.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_10.n_390.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_11.n_342.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_11.n_342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_12.n_287.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_12.n_287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_13.n_274.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_13.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_14.n_151.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_14.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_15.n_129.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_15.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_16.n_72.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_16.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_17.n_53.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_17.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_18.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_19.n_34.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_19.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_1.n_4460.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_1.n_4460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_20.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_21.n_28.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_21.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_22.n_23.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_22.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_23.n_20.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_23.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_2.n_3417.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_2.n_3417.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_3.n_1978.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_3.n_1978.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_4.n_1231.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_4.n_1231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_5.n_529.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_5.n_529.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_6.n_523.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_6.n_523.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_7.n_484.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_7.n_484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_8.n_440.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_8.n_440.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_9.n_405.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_9.n_405.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_0.n_2477.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_0.n_2477.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_10.n_90.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_10.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_11.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_12.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_1.n_1989.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_1.n_1989.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_2.n_1832.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_2.n_1832.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_3.n_1504.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_3.n_1504.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_4.n_1296.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_4.n_1296.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_5.n_964.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_5.n_964.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_6.n_705.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_6.n_705.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_7.n_328.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_7.n_328.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_8.n_162.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_8.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_0.n_1282.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_0.n_1282.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_1.n_1150.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_1.n_1150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_2.n_284.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_2.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_3.n_96.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_3.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_4.n_84.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_4.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_6.n_73.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_6.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_7.n_48.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_7.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_8.n_37.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_8.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_0.n_237.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_0.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_10.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_11.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_12.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_13.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_1.n_221.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_1.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_2.n_212.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_2.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_3.n_198.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_3.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_4.n_195.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_4.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_5.n_175.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_5.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_6.n_76.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_6.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_7.n_62.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_7.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_8.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_9.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_0.n_505.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_0.n_505.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_1.n_244.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_1.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_2.n_113.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_2.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_3.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_4.n_75.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_4.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_5.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_6.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_0.n_676.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_0.n_676.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_10.n_55.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_10.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_11.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_12.n_47.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_12.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_13.n_36.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_13.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_1.n_485.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_1.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_2.n_149.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_2.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_3.n_141.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_3.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_4.n_107.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_4.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_7.n_73.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_7.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_8.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_9.n_56.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_9.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_0.n_539.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_0.n_539.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_1.n_400.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_1.n_400.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_2.n_293.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_2.n_293.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_3.n_229.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_3.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_4.n_165.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_4.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_5.n_52.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_5.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_0.n_13898.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_0.n_13898.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_11.n_48.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_11.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_12.n_46.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_12.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_13.n_43.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_13.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_14.n_32.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_14.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_16.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_1.n_7267.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_1.n_7267.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_2.n_600.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_2.n_600.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_3.n_384.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_3.n_384.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_4.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_5.n_170.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_5.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_6.n_104.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_6.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_7.n_94.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_7.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_8.n_81.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_8.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_9.n_80.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_9.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_0.n_12692.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_0.n_12692.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_10.n_178.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_10.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_11.n_149.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_11.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_12.n_147.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_12.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_13.n_129.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_13.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_14.n_122.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_14.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_15.n_119.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_15.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_16.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_17.n_111.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_17.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_18.n_95.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_18.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_19.n_91.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_19.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_1.n_1198.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_1.n_1198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_20.n_71.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_20.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_21.n_69.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_21.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_22.n_61.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_22.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_23.n_56.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_23.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_24.n_49.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_24.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_25.n_31.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_25.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_26.n_20.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_26.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_2.n_725.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_2.n_725.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_3.n_439.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_3.n_439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_4.n_392.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_4.n_392.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_5.n_342.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_5.n_342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_6.n_230.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_6.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_7.n_210.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_7.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_8.n_207.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_8.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_9.n_182.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_9.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_0.n_1690.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_0.n_1690.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_10.n_173.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_10.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_11.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_12.n_87.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_12.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_13.n_74.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_13.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_14.n_66.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_14.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_15.n_57.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_15.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_16.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_17.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_18.n_26.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_18.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_1.n_1249.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_1.n_1249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_2.n_731.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_2.n_731.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_3.n_621.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_3.n_621.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_4.n_574.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_4.n_574.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_5.n_403.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_5.n_403.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_6.n_306.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_6.n_306.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_7.n_275.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_7.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_8.n_224.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_8.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_9.n_214.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_9.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_0.n_4358.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_0.n_4358.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_10.n_454.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_10.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_11.n_303.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_11.n_303.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_12.n_288.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_12.n_288.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_13.n_260.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_13.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_14.n_258.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_14.n_258.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_15.n_256.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_15.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_16.n_250.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_16.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_17.n_209.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_17.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_18.n_172.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_18.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_19.n_129.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_19.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_1.n_3883.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_1.n_3883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_20.n_102.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_20.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_21.n_89.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_21.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_22.n_75.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_22.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_23.n_67.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_23.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_24.n_65.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_24.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_25.n_42.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_25.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_26.n_35.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_26.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_27.n_29.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_27.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_28.n_22.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_28.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_2.n_824.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_2.n_824.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_3.n_708.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_3.n_708.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_4.n_675.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_4.n_675.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_5.n_609.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_5.n_609.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_6.n_505.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_6.n_505.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_7.n_480.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_7.n_480.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_8.n_478.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_8.n_478.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_9.n_467.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_9.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_0.n_601.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_0.n_601.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_10.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_1.n_582.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_1.n_582.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_2.n_310.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_2.n_310.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_4.n_108.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_4.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_5.n_99.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_5.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_6.n_96.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_6.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_7.n_61.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_7.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_8.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_9.n_55.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_9.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_0.n_177.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_0.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_1.n_79.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_1.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_2.n_49.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_2.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_3.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_4.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_5.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_6.n_34.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_6.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_7.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_8.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_0.n_517.PWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_0.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_1.n_361.PWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_1.n_361.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_2.n_340.PWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_2.n_340.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_3.n_68.PWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_3.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_4.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_0.n_2820.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_0.n_2820.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_10.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_11.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_12.n_27.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_12.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_13.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_14.n_24.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_14.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_15.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_1.n_1485.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_1.n_1485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_2.n_698.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_2.n_698.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_3.n_346.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_3.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_4.n_282.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_4.n_282.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_5.n_123.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_5.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_6.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_7.n_76.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_7.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_8.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_9.n_68.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_9.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_10.n_111.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_10.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_11.n_107.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_11.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_12.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_13.n_83.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_13.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_14.n_50.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_14.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_15.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_16.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_1.n_2649.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_1.n_2649.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_2.n_276.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_2.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_3.n_255.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_3.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_4.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_5.n_200.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_5.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_6.n_195.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_6.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_7.n_168.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_7.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_8.n_158.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_8.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_9.n_128.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_9.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_0.n_2486.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_0.n_2486.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_1.n_246.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_1.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_2.n_166.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_2.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_3.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_4.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_0.n_2820.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_0.n_2820.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_10.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_11.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_12.n_27.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_12.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_13.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_14.n_24.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_14.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_15.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_1.n_1485.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_1.n_1485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_2.n_698.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_2.n_698.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_3.n_346.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_3.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_4.n_282.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_4.n_282.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_5.n_123.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_5.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_6.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_7.n_76.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_7.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_8.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_9.n_68.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_9.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_10.n_111.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_10.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_11.n_107.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_11.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_12.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_13.n_83.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_13.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_14.n_50.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_14.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_15.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_16.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_1.n_2649.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_1.n_2649.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_2.n_276.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_2.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_3.n_255.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_3.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_4.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_5.n_200.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_5.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_6.n_195.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_6.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_7.n_168.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_7.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_8.n_158.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_8.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_9.n_128.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_9.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_0.n_2486.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_0.n_2486.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_1.n_246.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_1.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_2.n_166.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_2.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_3.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_4.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_0.n_1608.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_0.n_1608.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_10.n_150.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_10.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_11.n_124.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_11.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_12.n_117.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_12.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_13.n_108.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_13.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_14.n_94.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_14.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_15.n_78.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_15.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_16.n_78.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_16.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_17.n_75.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_17.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_18.n_58.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_18.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_19.n_53.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_19.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_1.n_548.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_1.n_548.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_20.n_49.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_20.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_21.n_49.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_21.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_22.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_23.n_27.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_23.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_24.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_25.n_23.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_25.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_2.n_526.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_2.n_526.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_3.n_391.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_3.n_391.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_4.n_383.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_4.n_383.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_5.n_305.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_5.n_305.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_6.n_278.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_6.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_7.n_200.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_7.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_8.n_174.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_8.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_9.n_154.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_9.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_0.n_1205.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_0.n_1205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_10.n_156.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_10.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_11.n_129.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_11.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_12.n_71.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_12.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_13.n_64.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_13.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_14.n_59.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_14.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_15.n_55.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_15.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_16.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_17.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_18.n_25.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_18.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_1.n_1021.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_1.n_1021.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_2.n_901.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_2.n_901.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_3.n_560.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_3.n_560.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_4.n_336.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_4.n_336.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_5.n_289.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_5.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_6.n_279.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_6.n_279.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_7.n_265.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_7.n_265.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_8.n_242.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_8.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_9.n_168.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_9.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_0.n_966.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_0.n_966.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_1.n_540.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_1.n_540.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_2.n_73.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_2.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_0.n_1746.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_0.n_1746.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_10.n_83.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_10.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_11.n_79.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_11.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_12.n_78.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_12.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_13.n_73.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_13.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_14.n_49.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_14.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_15.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_16.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_17.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_1.n_1243.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_1.n_1243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_2.n_907.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_2.n_907.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_3.n_452.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_3.n_452.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_4.n_292.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_4.n_292.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_5.n_282.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_5.n_282.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_7.n_149.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_7.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_8.n_116.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_8.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_9.n_95.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_9.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_0.n_1792.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_0.n_1792.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_1.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_2.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_3.n_102.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_3.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_4.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_5.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_6.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_7.n_26.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_7.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_8.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_0.n_4644.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_0.n_4644.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_10.n_439.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_10.n_439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_11.n_367.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_11.n_367.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_12.n_356.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_12.n_356.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_13.n_313.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_13.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_14.n_251.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_14.n_251.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_15.n_236.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_15.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_16.n_225.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_16.n_225.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_17.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_18.n_40.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_18.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_19.n_39.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_19.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_1.n_3844.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_1.n_3844.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_20.n_28.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_20.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_2.n_3280.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_2.n_3280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_3.n_2131.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_3.n_2131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_4.n_1517.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_4.n_1517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_5.n_1199.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_5.n_1199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_6.n_1014.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_6.n_1014.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_7.n_624.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_7.n_624.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_8.n_571.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_8.n_571.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_9.n_516.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_9.n_516.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_0.n_541.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_0.n_541.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_10.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_11.n_34.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_11.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_12.n_28.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_12.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_13.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_1.n_146.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_1.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_2.n_125.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_2.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_3.n_111.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_3.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_4.n_109.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_4.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_5.n_102.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_5.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_6.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_7.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_8.n_53.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_8.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_9.n_50.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_9.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_0.n_1349.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_0.n_1349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_1.n_1134.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_1.n_1134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_2.n_1030.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_2.n_1030.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_3.n_904.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_3.n_904.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_4.n_453.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_4.n_453.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_5.n_388.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_5.n_388.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_6.n_203.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_6.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_7.n_143.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_7.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_9.n_70.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_9.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_0.n_666.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_0.n_666.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_10.n_103.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_10.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_12.n_101.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_12.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_13.n_95.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_13.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_14.n_92.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_14.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_15.n_77.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_15.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_16.n_76.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_16.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_17.n_74.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_17.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_18.n_59.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_18.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_19.n_55.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_19.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_1.n_380.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_1.n_380.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_20.n_39.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_20.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_21.n_35.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_21.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_2.n_375.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_2.n_375.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_3.n_266.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_3.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_4.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_5.n_176.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_5.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_6.n_139.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_6.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_7.n_121.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_7.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_8.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_0.n_3391.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_0.n_3391.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_10.n_100.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_10.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_11.n_82.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_11.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_12.n_62.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_12.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_13.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_1.n_1435.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_1.n_1435.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_2.n_1066.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_2.n_1066.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_3.n_1043.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_3.n_1043.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_4.n_515.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_4.n_515.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_5.n_498.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_5.n_498.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_6.n_441.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_6.n_441.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_7.n_386.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_7.n_386.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_8.n_363.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_8.n_363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_9.n_307.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_9.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_0.n_829.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_0.n_829.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_10.n_84.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_10.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_11.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_12.n_46.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_12.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_13.n_40.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_13.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_14.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_1.n_281.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_1.n_281.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_2.n_185.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_2.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_3.n_171.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_3.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_5.n_125.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_5.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_6.n_110.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_6.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_7.n_110.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_7.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_8.n_99.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_8.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_9.n_93.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_9.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_0.n_895.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_0.n_895.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_10.n_162.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_10.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_11.n_156.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_11.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_12.n_143.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_12.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_13.n_141.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_13.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_14.n_139.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_14.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_15.n_132.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_15.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_16.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_17.n_108.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_17.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_18.n_104.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_18.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_19.n_104.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_19.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_1.n_666.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_1.n_666.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_20.n_102.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_20.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_21.n_98.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_21.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_22.n_97.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_22.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_23.n_87.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_23.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_24.n_66.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_24.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_25.n_62.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_25.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_26.n_54.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_26.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_27.n_23.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_27.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_2.n_481.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_2.n_481.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_3.n_304.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_3.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_4.n_256.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_4.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_5.n_205.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_5.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_6.n_190.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_6.n_190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_7.n_174.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_7.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_8.n_172.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_8.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_9.n_163.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_9.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_0.n_2769.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_0.n_2769.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_10.n_78.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_10.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_13.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_1.n_2285.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_1.n_2285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_2.n_1638.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_2.n_1638.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_3.n_1332.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_3.n_1332.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_4.n_877.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_4.n_877.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_5.n_647.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_5.n_647.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_6.n_407.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_6.n_407.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_7.n_400.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_7.n_400.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_8.n_222.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_8.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_9.n_145.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_9.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_0.n_2769.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_0.n_2769.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_10.n_78.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_10.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_13.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_1.n_2285.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_1.n_2285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_2.n_1638.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_2.n_1638.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_3.n_1332.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_3.n_1332.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_4.n_877.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_4.n_877.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_5.n_647.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_5.n_647.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_6.n_407.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_6.n_407.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_7.n_400.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_7.n_400.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_8.n_222.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_8.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_9.n_145.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_9.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_0.n_2622.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_0.n_2622.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_10.n_80.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_10.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_11.n_49.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_11.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_12.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_1.n_1059.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_1.n_1059.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_2.n_944.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_2.n_944.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_3.n_764.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_3.n_764.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_4.n_745.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_4.n_745.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_5.n_517.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_5.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_6.n_385.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_6.n_385.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_7.n_349.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_7.n_349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_8.n_300.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_8.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_9.n_182.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_9.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_0.n_5720.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_0.n_5720.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_1.n_541.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_1.n_541.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_2.n_263.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_2.n_263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_3.n_263.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_3.n_263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_4.n_183.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_4.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_5.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_5.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_6.n_82.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_6.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_7.n_62.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_7.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_8.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_8.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_9.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_0.n_4803.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_0.n_4803.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_10.n_194.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_10.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_11.n_183.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_11.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_12.n_124.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_12.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_13.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_13.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_14.n_79.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_14.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_15.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_15.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_16.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_16.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_17.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_18.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_19.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_1.n_790.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_1.n_790.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_2.n_685.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_2.n_685.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_3.n_639.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_3.n_639.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_4.n_488.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_4.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_5.n_367.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_5.n_367.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_6.n_359.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_6.n_359.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_7.n_354.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_7.n_354.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_8.n_340.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_8.n_340.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_9.n_210.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_9.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_0.n_8550.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_0.n_8550.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_10.n_711.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_10.n_711.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_11.n_693.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_11.n_693.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_12.n_548.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_12.n_548.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_13.n_538.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_13.n_538.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_14.n_467.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_14.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_15.n_461.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_15.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_16.n_443.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_16.n_443.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_17.n_338.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_17.n_338.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_18.n_244.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_18.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_19.n_227.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_19.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_1.n_3973.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_1.n_3973.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_20.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_20.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_21.n_177.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_21.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_22.n_168.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_22.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_23.n_126.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_23.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_24.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_24.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_25.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_26.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_26.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_27.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_27.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_2.n_3245.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_2.n_3245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_3.n_2977.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_3.n_2977.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_4.n_2063.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_4.n_2063.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_5.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_5.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_6.n_1756.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_6.n_1756.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_7.n_1555.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_7.n_1555.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_8.n_1491.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_8.n_1491.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_9.n_997.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_9.n_997.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_0.n_1482.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_0.n_1482.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_10.n_150.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_10.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_11.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_12.n_141.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_12.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_13.n_100.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_13.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_14.n_91.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_14.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_15.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_15.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_16.n_43.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_16.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_18.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_18.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_19.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_1.n_1093.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_1.n_1093.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_20.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_20.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_21.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_22.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_22.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_2.n_1054.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_2.n_1054.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_3.n_991.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_3.n_991.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_4.n_358.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_4.n_358.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_5.n_279.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_5.n_279.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_6.n_257.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_6.n_257.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_7.n_249.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_7.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_8.n_232.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_8.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_9.n_218.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_9.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_0.n_5181.PWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_0.n_5181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_1.n_625.PWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_1.n_625.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_2.n_297.PWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_2.n_297.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_3.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_3.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_4.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_5.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_6.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_7.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_0.n_2978.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_0.n_2978.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_10.n_40.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_10.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_1.n_2214.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_1.n_2214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_2.n_1312.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_2.n_1312.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_3.n_468.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_3.n_468.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_4.n_349.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_4.n_349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_5.n_280.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_5.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_6.n_254.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_6.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_7.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_8.n_89.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_8.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_9.n_64.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_9.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_10.n_103.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_10.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_11.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_12.n_75.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_12.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_13.n_67.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_13.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_14.n_59.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_14.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_15.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_16.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_17.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_18.n_22.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_18.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_19.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_1.n_6835.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_1.n_6835.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_2.n_1140.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_2.n_1140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_3.n_708.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_3.n_708.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_4.n_571.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_4.n_571.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_5.n_525.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_5.n_525.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_6.n_321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_7.n_146.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_7.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_8.n_132.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_8.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_9.n_110.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_9.n_110.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_10.n_103.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_10.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_11.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_12.n_75.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_12.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_13.n_67.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_13.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_14.n_59.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_14.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_15.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_16.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_17.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_18.n_22.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_18.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_19.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_1.n_6835.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_1.n_6835.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_2.n_1140.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_2.n_1140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_3.n_708.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_3.n_708.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_4.n_571.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_4.n_571.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_5.n_525.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_5.n_525.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_6.n_321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_7.n_146.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_7.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_8.n_132.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_8.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_9.n_110.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_9.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_0.n_1096.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_0.n_1096.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_10.n_59.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_10.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_12.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_13.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_14.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_1.n_199.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_1.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_2.n_172.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_2.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_3.n_141.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_3.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_4.n_120.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_4.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_5.n_112.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_5.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_6.n_90.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_6.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_7.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_8.n_77.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_8.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_9.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF347-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_0.n_533.PWM.meme motif-alignments-all-vs-all/ZNF347/ZNF347-201-vs-ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_0.n_533.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF347-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all/ZNF347/ZNF347-201-vs-ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_1.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF347-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF347/ZNF347-201-vs-ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_0.n_2405.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_0.n_2405.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_10.n_266.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_10.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_11.n_210.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_11.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_12.n_189.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_12.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_13.n_183.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_13.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_14.n_178.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_14.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_15.n_159.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_15.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_16.n_152.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_16.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_17.n_131.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_17.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_18.n_106.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_18.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_19.n_80.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_19.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_1.n_2017.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_1.n_2017.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_20.n_71.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_20.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_21.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_2.n_1796.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_2.n_1796.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_3.n_1151.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_3.n_1151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_4.n_837.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_4.n_837.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_5.n_513.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_5.n_513.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_6.n_462.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_6.n_462.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_7.n_394.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_7.n_394.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_8.n_389.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_8.n_389.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_9.n_383.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_9.n_383.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_0.n_3643.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_0.n_3643.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_1.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_2.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_3.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_0.n_124.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_0.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_10.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_11.n_21.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_11.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_12.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_1.n_121.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_1.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_2.n_114.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_2.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_3.n_96.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_3.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_4.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_6.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_7.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_8.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_9.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_0.n_549.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_0.n_549.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_10.n_275.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_10.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_11.n_274.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_11.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_12.n_255.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_12.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_13.n_252.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_13.n_252.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_14.n_247.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_14.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_15.n_239.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_15.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_16.n_225.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_16.n_225.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_17.n_208.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_17.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_18.n_202.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_18.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_19.n_189.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_19.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_1.n_442.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_1.n_442.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_20.n_129.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_20.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_21.n_122.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_21.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_22.n_119.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_22.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_23.n_91.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_23.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_24.n_87.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_24.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_25.n_84.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_25.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_26.n_73.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_26.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_27.n_71.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_27.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_28.n_56.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_28.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_29.n_53.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_29.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_2.n_403.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_2.n_403.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_30.n_53.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_30.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_31.n_49.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_31.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_32.n_26.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_32.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_3.n_382.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_3.n_382.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_4.n_377.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_4.n_377.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_5.n_331.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_5.n_331.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_6.n_322.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_6.n_322.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_7.n_313.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_7.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_8.n_298.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_8.n_298.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_9.n_281.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_9.n_281.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_0.n_1877.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_0.n_1877.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_10.n_135.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_10.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_11.n_124.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_11.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_12.n_123.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_12.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_13.n_118.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_13.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_14.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_15.n_110.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_15.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_16.n_76.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_16.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_17.n_73.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_17.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_18.n_71.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_18.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_19.n_67.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_19.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_1.n_1563.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_1.n_1563.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_20.n_65.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_20.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_21.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_22.n_46.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_22.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_23.n_39.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_23.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_24.n_35.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_24.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_25.n_22.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_25.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_26.n_20.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_26.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_2.n_1261.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_2.n_1261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_3.n_645.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_3.n_645.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_4.n_405.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_4.n_405.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_5.n_360.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_5.n_360.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_6.n_277.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_6.n_277.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_7.n_222.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_7.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_8.n_191.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_8.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_9.n_151.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_9.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_10.n_103.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_10.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_11.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_12.n_67.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_12.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_13.n_63.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_13.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_14.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_1.n_1237.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_1.n_1237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_2.n_764.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_2.n_764.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_3.n_365.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_3.n_365.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_4.n_348.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_4.n_348.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_5.n_286.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_5.n_286.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_6.n_224.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_6.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_7.n_133.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_7.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_8.n_124.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_8.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_9.n_116.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_9.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_10.n_103.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_10.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_11.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_12.n_67.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_12.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_13.n_63.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_13.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_14.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_1.n_1237.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_1.n_1237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_2.n_764.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_2.n_764.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_3.n_365.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_3.n_365.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_4.n_348.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_4.n_348.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_5.n_286.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_5.n_286.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_6.n_224.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_6.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_7.n_133.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_7.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_8.n_124.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_8.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_9.n_116.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_9.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_0.n_1408.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_0.n_1408.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_4.n_494.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_4.n_494.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_12.n_60.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_12.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_1.n_604.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_1.n_604.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_2.n_420.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_2.n_420.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_3.n_412.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_3.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_4.n_409.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_4.n_409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_5.n_348.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_5.n_348.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_6.n_304.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_6.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_7.n_256.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_7.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_8.n_184.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_8.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_9.n_157.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_9.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_0.n_1141.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_0.n_1141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_10.n_95.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_10.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_11.n_93.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_11.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_12.n_69.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_12.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_13.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_14.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_1.n_1090.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_1.n_1090.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_2.n_999.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_2.n_999.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_3.n_711.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_3.n_711.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_4.n_551.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_4.n_551.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_5.n_540.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_5.n_540.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_6.n_423.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_6.n_423.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_7.n_365.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_7.n_365.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_8.n_227.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_8.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_9.n_114.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_9.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_10.n_116.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_10.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_11.n_106.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_11.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_12.n_105.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_12.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_13.n_77.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_13.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_14.n_72.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_14.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_15.n_68.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_15.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_16.n_66.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_16.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_17.n_65.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_17.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_18.n_56.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_18.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_19.n_56.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_19.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_1.n_454.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_1.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_20.n_49.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_20.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_21.n_47.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_21.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_22.n_46.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_22.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_23.n_43.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_23.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_24.n_41.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_24.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_25.n_41.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_25.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_26.n_41.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_26.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_27.n_32.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_27.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_2.n_270.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_2.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_3.n_259.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_3.n_259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_4.n_247.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_4.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_5.n_246.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_5.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_6.n_218.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_6.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_7.n_189.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_7.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_8.n_157.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_8.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_9.n_130.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_9.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_10.n_116.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_10.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_11.n_106.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_11.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_12.n_105.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_12.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_13.n_77.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_13.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_14.n_72.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_14.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_15.n_68.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_15.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_16.n_66.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_16.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_17.n_65.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_17.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_18.n_56.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_18.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_19.n_56.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_19.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_1.n_454.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_1.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_20.n_49.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_20.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_21.n_47.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_21.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_22.n_46.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_22.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_23.n_43.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_23.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_24.n_41.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_24.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_25.n_41.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_25.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_26.n_41.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_26.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_27.n_32.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_27.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_2.n_270.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_2.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_3.n_259.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_3.n_259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_4.n_247.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_4.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_5.n_246.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_5.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_6.n_218.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_6.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_7.n_189.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_7.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_8.n_157.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_8.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_9.n_130.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_9.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_0.n_13953.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_0.n_13953.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_10.n_59.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_10.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_11.n_49.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_11.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_12.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_13.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_1.n_2096.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_1.n_2096.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_2.n_1363.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_2.n_1363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_3.n_1268.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_3.n_1268.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_4.n_1142.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_4.n_1142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_5.n_544.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_5.n_544.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_6.n_412.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_6.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_7.n_308.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_7.n_308.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_8.n_144.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_8.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_9.n_110.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_9.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_0.n_298.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_0.n_298.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_10.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_11.n_71.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_11.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_12.n_67.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_12.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_13.n_58.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_13.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_14.n_58.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_14.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_15.n_48.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_15.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_17.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_18.n_22.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_18.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_1.n_234.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_1.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_2.n_205.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_2.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_3.n_134.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_3.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_4.n_115.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_4.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_5.n_109.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_5.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_6.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_7.n_85.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_7.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_8.n_83.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_8.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_9.n_82.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_9.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_0.n_2392.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_0.n_2392.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_10.n_181.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_10.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_11.n_78.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_11.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_12.n_57.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_12.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_13.n_51.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_13.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_14.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_15.n_29.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_15.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_16.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_1.n_2283.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_1.n_2283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_2.n_1651.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_2.n_1651.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_3.n_1468.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_3.n_1468.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_4.n_1073.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_4.n_1073.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_5.n_834.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_5.n_834.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_6.n_815.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_6.n_815.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_7.n_697.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_7.n_697.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_8.n_578.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_8.n_578.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_9.n_294.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_9.n_294.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_0.n_1783.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_0.n_1783.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_10.n_109.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_10.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_11.n_71.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_11.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_12.n_58.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_12.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_13.n_53.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_13.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_14.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_15.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_16.n_20.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_6.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_7.n_183.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_7.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_8.n_152.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_8.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_9.n_125.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_9.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_0.n_232.PWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_0.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_1.n_187.PWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_1.n_187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_2.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_3.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_4.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_5.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_0.n_397.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_0.n_397.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_1.n_274.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_1.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_2.n_138.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_2.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_3.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_4.n_25.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_4.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_5.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_0.n_397.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_0.n_397.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_1.n_274.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_1.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_2.n_138.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_2.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_3.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_4.n_25.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_4.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_5.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_10.n_50.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_10.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_11.n_46.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_11.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_12.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_13.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_14.n_20.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_2.n_666.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_2.n_666.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_4.n_401.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_4.n_401.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_5.n_316.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_5.n_316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_6.n_273.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_6.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_7.n_271.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_7.n_271.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_8.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_10.n_348.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_10.n_348.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_11.n_314.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_11.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_12.n_300.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_12.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_13.n_220.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_13.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_14.n_219.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_14.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_15.n_215.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_15.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_16.n_215.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_16.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_17.n_189.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_17.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_18.n_184.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_18.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_19.n_132.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_19.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_1.n_2735.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_1.n_2735.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_20.n_83.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_20.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_21.n_79.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_21.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_22.n_78.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_22.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_23.n_51.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_23.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_24.n_43.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_24.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_25.n_29.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_25.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_26.n_28.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_26.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_27.n_28.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_27.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_28.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_28.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_2.n_1038.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_2.n_1038.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_3.n_512.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_3.n_512.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_4.n_461.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_4.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_5.n_435.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_5.n_435.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_6.n_424.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_6.n_424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_7.n_387.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_7.n_387.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_8.n_384.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_8.n_384.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_9.n_362.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_9.n_362.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_10.n_50.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_10.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_11.n_46.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_11.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_12.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_13.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_14.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_1.n_699.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_1.n_699.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_2.n_666.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_2.n_666.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_3.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_4.n_401.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_4.n_401.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_5.n_316.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_5.n_316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_6.n_273.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_6.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_7.n_271.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_7.n_271.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_8.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_10.n_348.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_10.n_348.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_11.n_314.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_11.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_12.n_300.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_12.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_13.n_220.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_13.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_14.n_219.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_14.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_15.n_215.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_15.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_16.n_215.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_16.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_17.n_189.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_17.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_18.n_184.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_18.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_19.n_132.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_19.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_1.n_2735.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_1.n_2735.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_20.n_83.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_20.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_21.n_79.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_21.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_22.n_78.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_22.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_23.n_51.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_23.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_24.n_43.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_24.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_25.n_29.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_25.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_26.n_28.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_26.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_27.n_28.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_27.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_28.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_28.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_2.n_1038.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_2.n_1038.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_3.n_512.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_3.n_512.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_4.n_461.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_4.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_5.n_435.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_5.n_435.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_6.n_424.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_6.n_424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_7.n_387.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_7.n_387.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_8.n_384.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_8.n_384.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_9.n_362.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_9.n_362.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_0.n_3381.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_0.n_3381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_10.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_11.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_12.n_72.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_12.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_13.n_71.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_13.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_14.n_69.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_14.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_15.n_58.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_15.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_17.n_31.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_17.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_18.n_24.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_18.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_1.n_1228.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_1.n_1228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_2.n_1160.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_2.n_1160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_3.n_853.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_3.n_853.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_4.n_780.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_4.n_780.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_5.n_342.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_5.n_342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_6.n_291.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_6.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_7.n_253.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_7.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_8.n_99.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_8.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_9.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_0.n_6342.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_0.n_6342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_10.n_93.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_10.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_11.n_81.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_11.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_12.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_13.n_37.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_13.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_1.n_656.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_1.n_656.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_3.n_486.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_3.n_486.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_4.n_278.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_4.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_5.n_268.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_5.n_268.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_6.n_222.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_6.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_7.n_135.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_7.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_8.n_115.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_8.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_9.n_108.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_9.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_0.n_2375.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_0.n_2375.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_10.n_152.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_10.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_11.n_141.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_11.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_12.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_13.n_67.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_13.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_14.n_54.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_14.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_16.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_17.n_35.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_17.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_18.n_28.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_18.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_19.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_1.n_489.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_1.n_489.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_20.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_2.n_467.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_2.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_3.n_459.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_3.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_4.n_442.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_4.n_442.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_5.n_437.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_5.n_437.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_6.n_321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_7.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_8.n_173.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_8.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_9.n_159.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_9.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_0.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_10.n_64.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_10.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_11.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_12.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_13.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_14.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_15.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_16.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_17.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_1.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_2.n_165.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_2.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_3.n_144.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_3.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_4.n_136.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_4.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_5.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_6.n_118.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_6.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_7.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_8.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_9.n_84.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_9.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_10.n_33.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_10.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_11.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_12.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_13.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_14.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_1.n_122.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_1.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_2.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_3.n_82.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_3.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_4.n_69.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_4.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_6.n_60.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_6.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_7.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_8.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_9.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_0.n_2375.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_0.n_2375.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_10.n_152.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_10.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_11.n_141.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_11.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_12.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_13.n_67.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_13.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_14.n_54.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_14.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_16.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_17.n_35.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_17.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_18.n_28.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_18.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_19.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_1.n_489.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_1.n_489.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_20.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_2.n_467.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_2.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_3.n_459.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_3.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_4.n_442.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_4.n_442.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_5.n_437.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_5.n_437.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_6.n_321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_7.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_8.n_173.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_8.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_9.n_159.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_9.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_0.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_10.n_64.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_10.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_11.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_12.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_13.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_14.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_15.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_16.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_17.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_1.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_2.n_165.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_2.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_3.n_144.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_3.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_4.n_136.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_4.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_5.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_6.n_118.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_6.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_7.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_8.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_9.n_84.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_9.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_10.n_33.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_10.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_11.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_12.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_13.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_14.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_1.n_122.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_1.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_2.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_3.n_82.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_3.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_4.n_69.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_4.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_6.n_60.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_6.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_7.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_8.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_9.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_0.n_8425.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_0.n_8425.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_1.n_978.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_1.n_978.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_2.n_523.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_2.n_523.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_3.n_317.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_3.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_4.n_251.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_4.n_251.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_5.n_123.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_5.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_6.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_7.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_8.n_37.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_8.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_9.n_37.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_9.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_0.n_351.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_0.n_351.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_10.n_69.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_10.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_11.n_62.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_11.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_12.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_13.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_14.n_54.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_14.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_15.n_46.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_15.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_16.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_17.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_18.n_44.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_18.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_19.n_43.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_19.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_1.n_162.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_1.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_20.n_37.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_20.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_21.n_35.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_21.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_22.n_33.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_22.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_23.n_33.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_23.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_24.n_31.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_24.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_25.n_28.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_25.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_26.n_28.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_26.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_27.n_27.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_27.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_28.n_20.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_28.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_2.n_160.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_2.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_3.n_143.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_3.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_4.n_127.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_4.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_5.n_125.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_5.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_6.n_78.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_6.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_7.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_8.n_73.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_8.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_9.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_10.n_100.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_10.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_11.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_12.n_95.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_12.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_13.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_14.n_88.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_14.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_15.n_81.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_15.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_16.n_79.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_16.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_17.n_68.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_17.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_18.n_59.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_18.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_19.n_59.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_19.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_1.n_235.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_1.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_20.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_21.n_51.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_21.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_22.n_51.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_22.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_23.n_32.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_23.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_2.n_194.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_2.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_3.n_185.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_3.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_4.n_139.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_4.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_5.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_6.n_118.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_6.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_8.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_10.n_100.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_10.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_11.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_12.n_95.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_12.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_13.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_14.n_88.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_14.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_15.n_81.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_15.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_16.n_79.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_16.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_17.n_68.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_17.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_18.n_59.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_18.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_19.n_59.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_19.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_1.n_235.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_1.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_20.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_21.n_51.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_21.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_22.n_51.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_22.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_23.n_32.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_23.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_2.n_194.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_2.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_3.n_185.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_3.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_4.n_139.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_4.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_5.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_6.n_118.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_6.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_8.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_0.n_1391.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_0.n_1391.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_10.n_198.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_10.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_11.n_110.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_11.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_12.n_95.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_12.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_13.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_13.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_14.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_15.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_17.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_18.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_1.n_1210.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_1.n_1210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_2.n_609.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_2.n_609.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_3.n_374.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_3.n_374.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_4.n_347.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_4.n_347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_5.n_336.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_5.n_336.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_6.n_308.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_6.n_308.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_7.n_283.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_7.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_8.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_8.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_9.n_203.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_9.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_0.n_2746.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_0.n_2746.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_1.n_2101.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_1.n_2101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_2.n_720.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_2.n_720.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_3.n_687.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_3.n_687.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_4.n_257.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_4.n_257.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_5.n_143.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_5.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_6.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_7.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_8.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_0.n_3604.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_0.n_3604.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_10.n_238.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_10.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_11.n_238.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_11.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_12.n_185.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_12.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_13.n_174.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_13.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_14.n_167.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_14.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_15.n_145.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_15.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_16.n_134.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_16.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_17.n_111.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_17.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_18.n_101.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_18.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_19.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_19.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_1.n_2631.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_1.n_2631.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_20.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_20.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_21.n_44.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_21.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_22.n_33.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_22.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_23.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_24.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_25.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_25.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_2.n_1127.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_2.n_1127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_3.n_837.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_3.n_837.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_4.n_694.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_4.n_694.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_5.n_410.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_5.n_410.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_6.n_357.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_6.n_357.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_7.n_348.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_7.n_348.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_8.n_315.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_8.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_9.n_260.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_9.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_0.n_12413.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_0.n_12413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_10.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_11.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_12.n_33.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_12.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_13.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_1.n_588.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_1.n_588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_2.n_415.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_2.n_415.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_3.n_280.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_3.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_4.n_253.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_4.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_5.n_148.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_5.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_6.n_141.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_6.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_7.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_7.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_8.n_112.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_8.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_9.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_9.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_0.n_749.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_0.n_749.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_10.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_10.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_11.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_11.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_1.n_199.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_1.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_2.n_157.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_2.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_3.n_96.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_3.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_4.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_5.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_6.n_71.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_6.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_7.n_65.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_7.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_8.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_9.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_9.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_0.n_1088.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_0.n_1088.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_10.n_71.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_10.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_11.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_11.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_12.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_12.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_13.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_14.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_1.n_495.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_1.n_495.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_2.n_429.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_2.n_429.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_3.n_209.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_3.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_4.n_202.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_4.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_5.n_143.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_5.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_6.n_110.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_6.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_7.n_101.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_7.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_8.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_9.n_90.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_9.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_0.n_706.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_0.n_706.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_10.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_10.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_11.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_12.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_1.n_271.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_1.n_271.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_2.n_156.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_2.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_3.n_118.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_3.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_4.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_4.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_5.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_5.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_6.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_6.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_7.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_8.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_9.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_9.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_0.n_3265.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_0.n_3265.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_10.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_10.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_12.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_12.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_13.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_14.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_1.n_1861.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_1.n_1861.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_2.n_1696.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_2.n_1696.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_3.n_517.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_3.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_4.n_317.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_4.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_5.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_6.n_205.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_6.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_7.n_187.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_7.n_187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_8.n_145.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_8.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_9.n_144.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_9.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_0.n_2870.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_0.n_2870.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_10.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_11.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_12.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_12.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_13.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_14.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_14.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_1.n_1099.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_1.n_1099.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_2.n_715.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_2.n_715.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_3.n_488.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_3.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_4.n_218.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_4.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_5.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_5.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_6.n_133.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_6.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_7.n_122.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_7.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_8.n_115.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_8.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_9.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_0.n_1764.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_0.n_1764.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_1.n_343.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_1.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_2.n_191.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_2.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_3.n_176.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_3.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_4.n_171.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_4.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_5.n_151.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_5.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_6.n_141.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_6.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_7.n_104.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_7.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_8.n_89.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_8.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_0.n_236.PWM.meme motif-alignments-all-vs-all/ZNF155/ZNF155-201-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_0.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_1.n_198.PWM.meme motif-alignments-all-vs-all/ZNF155/ZNF155-201-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_1.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZNF155/ZNF155-201-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_2.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF155/ZNF155-201-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_0.n_6934.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_0.n_6934.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_10.n_77.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_10.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_11.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_12.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_13.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_1.n_5952.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_1.n_5952.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_2.n_2356.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_2.n_2356.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_3.n_1819.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_3.n_1819.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_4.n_441.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_4.n_441.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_5.n_434.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_5.n_434.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_6.n_315.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_6.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_7.n_252.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_7.n_252.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_8.n_222.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_8.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_9.n_215.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_9.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_0.n_592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_10.n_185.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_10.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_11.n_158.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_11.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_12.n_145.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_12.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_13.n_145.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_13.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_14.n_140.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_14.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_15.n_109.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_15.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_16.n_98.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_16.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_17.n_97.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_17.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_18.n_81.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_18.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_19.n_42.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_19.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_1.n_496.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_1.n_496.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_20.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_21.n_26.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_21.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_2.n_462.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_2.n_462.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_3.n_395.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_3.n_395.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_4.n_316.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_4.n_316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_5.n_309.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_5.n_309.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_6.n_304.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_6.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_7.n_280.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_7.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_8.n_246.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_8.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_9.n_204.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_9.n_204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_1.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_2.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_3.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_1.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_2.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_3.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_0.n_546.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_0.n_546.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_1.n_532.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_1.n_532.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_2.n_370.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_2.n_370.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_3.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_4.n_68.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_4.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_5.n_54.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_5.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_6.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_7.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_8.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_0.n_2732.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_0.n_2732.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_10.n_428.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_10.n_428.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_11.n_252.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_11.n_252.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_12.n_232.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_12.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_13.n_173.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_13.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_14.n_111.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_14.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_15.n_99.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_15.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_16.n_58.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_16.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_17.n_38.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_17.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_18.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_1.n_2626.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_1.n_2626.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_2.n_1959.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_2.n_1959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_3.n_1548.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_3.n_1548.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_4.n_1443.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_4.n_1443.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_5.n_962.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_5.n_962.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_6.n_852.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_6.n_852.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_7.n_547.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_7.n_547.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_8.n_488.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_8.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_9.n_446.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_9.n_446.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_0.n_269.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_0.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_1.n_119.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_1.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_2.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_3.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_4.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_6.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_7.n_47.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_7.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_8.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_10.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_11.n_62.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_11.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_12.n_38.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_12.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_1.n_3488.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_1.n_3488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_2.n_462.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_2.n_462.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_3.n_384.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_3.n_384.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_4.n_376.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_4.n_376.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_5.n_181.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_5.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_6.n_159.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_6.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_7.n_159.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_7.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_8.n_117.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_8.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_9.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_10.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_11.n_62.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_11.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_12.n_38.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_12.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_1.n_3488.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_1.n_3488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_2.n_462.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_2.n_462.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_3.n_384.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_3.n_384.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_4.n_376.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_4.n_376.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_5.n_181.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_5.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_6.n_159.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_6.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_7.n_159.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_7.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_8.n_117.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_8.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_9.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_0.n_2097.PWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_0.n_2097.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_10.n_93.PWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_10.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_1.n_402.PWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_1.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_2.n_256.PWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_2.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_3.n_240.PWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_3.n_240.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_0.n_2133.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_0.n_2133.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_9.n_360.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_9.n_360.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_0.n_8526.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_0.n_8526.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_10.n_91.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_10.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_11.n_90.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_11.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_12.n_61.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_12.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_13.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_14.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_15.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_16.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_1.n_2097.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_1.n_2097.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_2.n_885.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_2.n_885.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_3.n_500.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_3.n_500.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_4.n_484.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_4.n_484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_5.n_446.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_5.n_446.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_6.n_417.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_6.n_417.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_7.n_292.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_7.n_292.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_8.n_232.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_8.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_9.n_178.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_9.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_0.n_14335.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_0.n_14335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_10.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_11.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_12.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_13.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_14.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_15.n_43.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_15.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_16.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_17.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_1.n_2220.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_1.n_2220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_2.n_1363.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_2.n_1363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_3.n_661.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_3.n_661.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_4.n_643.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_4.n_643.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_12.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_1.n_225.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_1.n_225.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_2.n_158.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_2.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_3.n_156.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_3.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_4.n_79.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_4.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_5.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_5.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_6.n_73.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_6.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_8.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_8.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_9.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_10.n_492.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_10.n_492.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_11.n_282.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_11.n_282.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_12.n_277.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_12.n_277.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_13.n_228.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_13.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_14.n_218.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_14.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_15.n_208.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_15.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_16.n_156.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_16.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_17.n_105.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_17.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_18.n_85.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_18.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_19.n_70.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_19.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_1.n_3272.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_1.n_3272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_20.n_69.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_20.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_21.n_63.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_21.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_22.n_56.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_22.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_23.n_50.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_23.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_24.n_41.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_24.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_25.n_30.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_25.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_26.n_22.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_26.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_2.n_2348.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_2.n_2348.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_3.n_2007.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_3.n_2007.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_4.n_1633.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_4.n_1633.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_5.n_1203.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_5.n_1203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_6.n_1197.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_6.n_1197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_7.n_931.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_7.n_931.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_8.n_831.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_8.n_831.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_9.n_644.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_9.n_644.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_10.n_492.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_10.n_492.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_11.n_282.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_11.n_282.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_12.n_277.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_12.n_277.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_13.n_228.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_13.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_14.n_218.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_14.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_15.n_208.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_15.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_16.n_156.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_16.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_17.n_105.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_17.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_18.n_85.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_18.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_19.n_70.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_19.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_1.n_3272.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_1.n_3272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_20.n_69.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_20.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_21.n_63.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_21.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_22.n_56.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_22.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_23.n_50.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_23.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_24.n_41.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_24.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_25.n_30.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_25.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_26.n_22.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_26.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_2.n_2348.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_2.n_2348.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_3.n_2007.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_3.n_2007.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_4.n_1633.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_4.n_1633.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_5.n_1203.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_5.n_1203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_6.n_1197.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_6.n_1197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_7.n_931.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_7.n_931.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_8.n_831.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_8.n_831.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_9.n_644.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_9.n_644.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_0.n_54.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_0.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_1.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_2.n_39.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_2.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_3.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_5.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_7.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_0.n_1246.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_0.n_1246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_1.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_2.n_56.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_2.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_0.n_8249.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_0.n_8249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_10.n_44.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_10.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_1.n_386.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_1.n_386.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_2.n_266.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_2.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_3.n_230.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_3.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_4.n_221.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_4.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_5.n_126.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_5.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_6.n_72.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_6.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_7.n_62.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_7.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_8.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_9.n_48.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_9.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_0.n_502.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_0.n_502.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_10.n_141.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_10.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_11.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_12.n_126.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_12.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_13.n_123.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_13.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_14.n_117.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_14.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_15.n_115.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_15.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_16.n_95.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_16.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_17.n_95.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_17.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_18.n_94.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_18.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_19.n_74.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_19.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_1.n_435.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_1.n_435.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_20.n_66.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_20.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_21.n_55.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_21.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_22.n_54.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_22.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_23.n_53.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_23.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_24.n_51.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_24.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_2.n_381.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_2.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_3.n_350.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_3.n_350.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_4.n_330.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_4.n_330.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_5.n_295.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_5.n_295.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_6.n_294.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_6.n_294.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_7.n_266.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_7.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_8.n_225.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_8.n_225.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_9.n_171.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_9.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_0.n_834.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_0.n_834.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_1.n_673.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_1.n_673.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_2.n_241.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_2.n_241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_3.n_177.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_3.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_4.n_103.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_4.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_5.n_99.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_5.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_6.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_8.n_48.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_8.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_9.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_10.n_109.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_10.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_11.n_103.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_11.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_12.n_94.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_12.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_13.n_79.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_13.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_14.n_78.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_14.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_15.n_70.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_15.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_16.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_17.n_52.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_17.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_18.n_49.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_18.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_19.n_47.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_19.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_1.n_786.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_1.n_786.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_20.n_42.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_20.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_21.n_28.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_21.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_22.n_21.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_22.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_23.n_20.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_23.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_2.n_527.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_2.n_527.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_3.n_276.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_3.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_4.n_212.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_4.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_5.n_155.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_5.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_6.n_129.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_6.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_7.n_129.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_7.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_8.n_127.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_8.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_9.n_121.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_9.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_0.n_502.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_0.n_502.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_10.n_141.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_10.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_11.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_12.n_126.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_12.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_13.n_123.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_13.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_14.n_117.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_14.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_15.n_115.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_15.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_16.n_95.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_16.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_17.n_95.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_17.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_18.n_94.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_18.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_19.n_74.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_19.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_1.n_435.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_1.n_435.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_20.n_66.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_20.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_21.n_55.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_21.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_22.n_54.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_22.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_23.n_53.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_23.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_24.n_51.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_24.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_2.n_381.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_2.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_3.n_350.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_3.n_350.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_4.n_330.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_4.n_330.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_5.n_295.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_5.n_295.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_6.n_294.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_6.n_294.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_7.n_266.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_7.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_8.n_225.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_8.n_225.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_9.n_171.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_9.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_0.n_834.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_0.n_834.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_1.n_673.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_1.n_673.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_2.n_241.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_2.n_241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_3.n_177.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_3.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_4.n_103.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_4.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_5.n_99.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_5.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_6.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_8.n_48.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_8.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_9.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_10.n_109.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_10.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_11.n_103.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_11.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_12.n_94.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_12.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_13.n_79.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_13.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_14.n_78.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_14.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_15.n_70.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_15.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_16.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_17.n_52.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_17.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_18.n_49.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_18.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_19.n_47.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_19.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_1.n_786.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_1.n_786.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_20.n_42.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_20.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_21.n_28.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_21.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_22.n_21.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_22.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_23.n_20.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_23.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_2.n_527.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_2.n_527.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_3.n_276.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_3.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_4.n_212.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_4.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_5.n_155.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_5.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_6.n_129.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_6.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_7.n_129.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_7.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_8.n_127.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_8.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_9.n_121.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_9.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_0.n_1042.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_0.n_1042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_10.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_11.n_27.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_11.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_1.n_445.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_1.n_445.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_2.n_291.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_2.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_3.n_119.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_3.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_5.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_6.n_89.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_6.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_7.n_64.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_7.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_8.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_9.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_0.n_217.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_0.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_1.n_169.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_1.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_2.n_73.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_2.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_3.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_0.n_782.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_0.n_782.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_10.n_125.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_10.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_11.n_124.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_11.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_12.n_116.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_12.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_13.n_81.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_13.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_14.n_73.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_14.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_15.n_34.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_15.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_1.n_753.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_1.n_753.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_2.n_742.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_2.n_742.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_3.n_279.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_3.n_279.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_4.n_220.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_4.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_5.n_180.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_5.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_6.n_179.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_6.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_7.n_158.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_7.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_8.n_143.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_8.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_9.n_141.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_9.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_0.n_2050.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_0.n_2050.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_1.n_1533.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_1.n_1533.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_2.n_1487.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_2.n_1487.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_3.n_522.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_3.n_522.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_4.n_232.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_4.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_5.n_90.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_5.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_6.n_81.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_6.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_7.n_47.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_7.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_8.n_46.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_8.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_9.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_0.n_8555.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_0.n_8555.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_10.n_39.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_10.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_11.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_1.n_4959.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_1.n_4959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_2.n_4422.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_2.n_4422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_3.n_4022.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_3.n_4022.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_4.n_695.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_4.n_695.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_5.n_588.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_5.n_588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_6.n_522.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_6.n_522.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_7.n_447.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_7.n_447.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_8.n_391.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_8.n_391.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_9.n_359.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_9.n_359.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_0.n_612.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_0.n_612.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_10.n_148.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_10.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_11.n_128.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_11.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_12.n_92.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_12.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_13.n_77.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_13.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_14.n_73.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_14.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_15.n_71.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_15.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_16.n_65.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_16.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_17.n_50.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_17.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_18.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_19.n_30.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_19.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_1.n_264.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_1.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_2.n_231.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_2.n_231.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_5.n_207.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_5.n_207.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_8.n_163.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_8.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_9.n_153.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_9.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_0.n_719.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_0.n_719.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_10.n_86.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_10.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_11.n_70.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_11.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_12.n_52.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_12.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_13.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_14.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_15.n_36.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_15.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_16.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_17.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_18.n_28.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_18.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_19.n_28.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_19.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_1.n_424.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_1.n_424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_20.n_25.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_20.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_21.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_22.n_20.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_22.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_2.n_212.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_2.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_3.n_180.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_3.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_4.n_162.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_4.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_5.n_140.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_5.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_6.n_125.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_6.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_7.n_117.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_7.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_8.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_9.n_91.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_9.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_0.n_458.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_0.n_458.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_10.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_11.n_37.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_11.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_12.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_13.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_14.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_1.n_279.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_1.n_279.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_2.n_96.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_2.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_3.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_4.n_93.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_4.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_5.n_81.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_5.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_6.n_81.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_6.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_7.n_75.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_7.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_8.n_73.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_8.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_9.n_66.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_9.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_0.n_460.PWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_0.n_460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_1.n_120.PWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_1.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_2.n_94.PWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_2.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_3.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_4.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_5.n_42.PWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_5.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_6.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_0.n_2402.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_0.n_2402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_10.n_285.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_10.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_11.n_261.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_11.n_261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_12.n_228.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_12.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_13.n_182.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_13.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_14.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_15.n_36.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_15.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_16.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_1.n_1781.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_1.n_1781.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_2.n_1090.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_2.n_1090.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_3.n_908.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_3.n_908.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_4.n_877.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_4.n_877.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_5.n_864.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_5.n_864.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_6.n_820.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_6.n_820.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_7.n_524.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_7.n_524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_8.n_326.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_8.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_9.n_300.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_9.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_0.n_2600.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_0.n_2600.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_10.n_113.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_10.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_11.n_113.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_11.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_12.n_97.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_12.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_13.n_83.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_13.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_14.n_74.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_14.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_15.n_35.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_15.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_16.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_17.n_32.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_3.n_409.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_3.n_409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_4.n_344.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_4.n_344.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_5.n_252.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_5.n_252.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_6.n_187.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_6.n_187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_7.n_170.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_7.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_8.n_159.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_8.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_9.n_124.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_9.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_10.n_143.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_10.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_11.n_136.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_11.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_12.n_112.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_12.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_13.n_101.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_13.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_14.n_93.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_14.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_15.n_90.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_15.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_16.n_65.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_16.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_17.n_59.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_17.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_18.n_52.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_18.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_19.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_1.n_1370.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_1.n_1370.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_20.n_47.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_20.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_21.n_36.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_21.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_22.n_33.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_22.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_2.n_689.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_2.n_689.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_3.n_594.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_3.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_4.n_514.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_4.n_514.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_5.n_483.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_5.n_483.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_6.n_330.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_6.n_330.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_7.n_273.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_7.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_8.n_167.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_8.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_9.n_146.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_9.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_0.n_1999.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_0.n_1999.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_10.n_143.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_10.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_11.n_136.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_11.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_12.n_112.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_12.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_13.n_101.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_13.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_14.n_93.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_14.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_15.n_90.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_15.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_16.n_65.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_16.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_17.n_59.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_17.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_18.n_52.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_18.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_19.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_1.n_1370.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_1.n_1370.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_20.n_47.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_20.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_21.n_36.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_21.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_22.n_33.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_22.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_2.n_689.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_2.n_689.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_3.n_594.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_3.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_4.n_514.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_4.n_514.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_5.n_483.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_5.n_483.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_6.n_330.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_6.n_330.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_7.n_273.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_7.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_8.n_167.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_8.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_9.n_146.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_9.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_0.n_357.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_0.n_357.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_10.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_1.n_191.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_1.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_2.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_3.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_4.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_5.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_6.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_7.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_8.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_9.n_22.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_9.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_0.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_1.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_0.n_1809.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_0.n_1809.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_1.n_38.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_1.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_2.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_0.n_1354.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_0.n_1354.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_1.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_2.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR000FCI.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR000FCI.bestfold.profile.pattern_0.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR000FCI.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR000FCI.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_0.n_1309.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_0.n_1309.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_1.n_105.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_1.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_2.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_3.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_0.n_372.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_0.n_372.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_1.n_223.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_1.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_2.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_3.n_49.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_3.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_4.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_5.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR000EVR.bestfold.profile.pattern_0.n_532.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR000EVR.bestfold.profile.pattern_0.n_532.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR000EVR.bestfold.profile.pattern_1.n_82.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR000EVR.bestfold.profile.pattern_1.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_0.n_1773.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_0.n_1773.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_10.n_170.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_10.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_11.n_164.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_11.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_12.n_144.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_12.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_13.n_134.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_13.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_14.n_132.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_14.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_15.n_129.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_15.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_16.n_118.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_16.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_17.n_109.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_17.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_18.n_104.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_18.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_19.n_90.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_19.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_1.n_1578.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_1.n_1578.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_20.n_85.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_20.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_21.n_82.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_21.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_22.n_81.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_22.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_23.n_74.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_23.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_24.n_72.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_24.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_25.n_56.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_25.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_26.n_42.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_26.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_27.n_27.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_27.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_28.n_24.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_28.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_2.n_1263.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_2.n_1263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_3.n_1238.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_3.n_1238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_4.n_385.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_4.n_385.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_5.n_324.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_5.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_6.n_319.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_6.n_319.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_7.n_316.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_7.n_316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_8.n_302.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_8.n_302.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_9.n_199.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_9.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_0.n_956.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_0.n_956.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_1.n_344.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_1.n_344.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_2.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_3.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_4.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EWE.bestfold.profile.pattern_0.n_280.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EWE.bestfold.profile.pattern_0.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_0.n_1114.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_0.n_1114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_1.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_2.n_100.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_2.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_3.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_0.n_3169.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_0.n_3169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_10.n_672.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_10.n_672.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_11.n_558.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_11.n_558.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_12.n_546.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_12.n_546.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_13.n_334.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_13.n_334.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_14.n_313.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_14.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_15.n_172.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_15.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_16.n_60.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_16.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_17.n_55.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_17.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_18.n_42.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_18.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_19.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_1.n_2534.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_1.n_2534.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_2.n_2407.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_2.n_2407.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_3.n_1983.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_3.n_1983.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_4.n_1962.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_4.n_1962.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_5.n_1899.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_5.n_1899.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_6.n_1204.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_6.n_1204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_7.n_1095.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_7.n_1095.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_8.n_1080.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_8.n_1080.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_9.n_729.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_9.n_729.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_0.n_6265.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_0.n_6265.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_10.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_10.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_11.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_12.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_13.n_36.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_13.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_1.n_4237.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_1.n_4237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_2.n_3975.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_2.n_3975.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_3.n_3694.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_3.n_3694.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_4.n_931.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_4.n_931.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_5.n_630.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_5.n_630.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_7.n_171.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_7.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_8.n_110.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_8.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_9.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_0.n_3505.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_0.n_3505.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_10.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_10.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_11.n_146.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_11.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_12.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_12.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_13.n_133.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_13.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_14.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_15.n_114.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_15.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_16.n_88.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_16.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_17.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_17.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_18.n_36.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_18.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_19.n_33.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_19.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_1.n_2318.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_1.n_2318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_20.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_20.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_21.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_22.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_22.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_2.n_1446.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_2.n_1446.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_3.n_1326.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_3.n_1326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_4.n_810.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_4.n_810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_5.n_754.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_5.n_754.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_6.n_441.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_6.n_441.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_9.n_236.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_9.n_236.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_1.n_2981.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_1.n_2981.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_3.n_988.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_3.n_988.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_4.n_553.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_4.n_553.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_6.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_6.n_140.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_10.n_188.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_10.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_11.n_136.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_11.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_12.n_126.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_12.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_14.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_16.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_1.n_2238.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_1.n_2238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_2.n_912.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_2.n_912.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_3.n_906.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_3.n_906.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_4.n_820.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_4.n_820.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_5.n_621.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_5.n_621.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_6.n_468.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_6.n_468.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_7.n_335.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_7.n_335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_8.n_253.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_8.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_9.n_237.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_9.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_0.n_1008.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_0.n_1008.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_10.n_109.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_10.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_11.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_11.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_12.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_12.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_13.n_56.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_13.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_14.n_56.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_14.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_15.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_16.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_17.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_18.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_1.n_961.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_1.n_961.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_2.n_451.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_2.n_451.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_3.n_337.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_3.n_337.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_4.n_270.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_4.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_5.n_269.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_5.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_6.n_228.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_6.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_7.n_163.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_7.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_8.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_8.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_9.n_121.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_9.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_0.n_10300.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_0.n_10300.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_2.n_1002.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_2.n_1002.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_3.n_988.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_3.n_988.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_4.n_553.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_4.n_553.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_5.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_5.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_6.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_6.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_7.n_136.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_7.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_8.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_8.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_9.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_9.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_0.n_3180.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_0.n_3180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_10.n_188.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_10.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_11.n_136.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_11.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_12.n_126.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_12.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_14.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_16.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_1.n_2238.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_1.n_2238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_2.n_912.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_2.n_912.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_3.n_906.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_3.n_906.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_4.n_820.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_4.n_820.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_5.n_621.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_5.n_621.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_6.n_468.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_6.n_468.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_7.n_335.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_7.n_335.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_8.n_253.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_8.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_9.n_237.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_9.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_0.n_1008.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_0.n_1008.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_10.n_109.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_10.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_11.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_11.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_12.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_12.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_13.n_56.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_13.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_14.n_56.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_14.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_15.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_16.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_17.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_18.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_1.n_961.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_1.n_961.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_2.n_451.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_2.n_451.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_3.n_337.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_3.n_337.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_4.n_270.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_4.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_5.n_269.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_5.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_6.n_228.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_6.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_7.n_163.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_7.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_8.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_8.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_9.n_121.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_9.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_0.n_16430.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_0.n_16430.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_1.n_1740.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_1.n_1740.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_2.n_700.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_2.n_700.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_3.n_364.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_3.n_364.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_4.n_317.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_4.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_5.n_107.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_5.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_6.n_99.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_6.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_7.n_97.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_7.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_8.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_8.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_9.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_0.n_3630.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_0.n_3630.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_10.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_10.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_11.n_144.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_11.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_12.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_12.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_13.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_13.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_14.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_14.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_15.n_29.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_15.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_16.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_17.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_18.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_18.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_19.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_19.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_1.n_2387.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_1.n_2387.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_20.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_20.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_2.n_1998.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_2.n_1998.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_3.n_543.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_3.n_543.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_4.n_495.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_4.n_495.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_5.n_438.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_5.n_438.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_6.n_385.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_6.n_385.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_7.n_229.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_7.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_8.n_191.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_8.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_9.n_187.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_9.n_187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_0.n_1604.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_0.n_1604.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_10.n_120.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_10.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_11.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_12.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_12.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_13.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_13.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_14.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_15.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_16.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_1.n_1124.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_1.n_1124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_2.n_1096.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_2.n_1096.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_3.n_1062.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_3.n_1062.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_4.n_397.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_4.n_397.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_5.n_280.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_5.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_6.n_215.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_6.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_7.n_199.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_7.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_8.n_136.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_8.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_9.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_0.n_470.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_0.n_470.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_1.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_2.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_3.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_4.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_5.n_54.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_5.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_6.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_7.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_8.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_0.n_2524.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_0.n_2524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_10.n_190.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_10.n_190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_11.n_100.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_11.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_12.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_12.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_13.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_14.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_1.n_1860.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_1.n_1860.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_2.n_1590.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_2.n_1590.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_3.n_1459.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_3.n_1459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_4.n_1263.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_4.n_1263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_5.n_584.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_5.n_584.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_6.n_551.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_6.n_551.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_7.n_416.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_7.n_416.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_8.n_283.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_8.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_9.n_203.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_9.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_0.n_2524.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_0.n_2524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_10.n_190.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_10.n_190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_11.n_100.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_11.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_12.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_12.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_13.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_14.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_1.n_1860.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_1.n_1860.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_2.n_1590.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_2.n_1590.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_3.n_1459.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_3.n_1459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_4.n_1263.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_4.n_1263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_5.n_584.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_5.n_584.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_6.n_551.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_6.n_551.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_7.n_416.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_7.n_416.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_8.n_283.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_8.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_9.n_203.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_9.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_0.n_2195.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_0.n_2195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_10.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_1.n_387.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_1.n_387.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_2.n_157.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_2.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_3.n_152.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_3.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_4.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_5.n_76.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_5.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_6.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_8.n_31.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HEK591-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HEK591-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_0.n_212.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_0.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_10.n_34.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_10.n_34.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_13.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_1.n_164.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_1.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_2.n_160.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_2.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_3.n_146.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_3.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_4.n_143.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_4.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_5.n_125.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_5.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_6.n_110.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_6.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_7.n_87.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_7.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_8.n_51.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_8.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_9.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_10.n_366.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_10.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_11.n_237.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_11.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_12.n_226.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_12.n_226.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_15.n_63.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_9.n_394.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_9.n_394.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_28.n_63.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_28.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_29.n_51.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_29.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_2.n_620.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_2.n_620.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_30.n_50.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_30.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_31.n_26.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_31.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_32.n_25.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_32.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_3.n_522.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_3.n_522.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_4.n_503.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_4.n_503.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_5.n_459.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_5.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_6.n_441.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_6.n_441.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_7.n_435.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_7.n_435.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_8.n_427.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_8.n_427.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_9.n_343.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_9.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_0.n_923.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_0.n_923.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_10.n_334.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_10.n_334.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_11.n_318.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_11.n_318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_12.n_296.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_12.n_296.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_13.n_254.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_13.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_14.n_221.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_14.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_15.n_161.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_15.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_16.n_154.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_16.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_17.n_153.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_17.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_18.n_146.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_18.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_19.n_136.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_19.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_1.n_846.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_1.n_846.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_20.n_132.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_20.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_21.n_124.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_21.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_22.n_102.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_22.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_23.n_96.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_23.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_24.n_96.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_24.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_25.n_95.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_25.n_95.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_27.n_75.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_27.n_75.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_30.n_50.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_30.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_31.n_26.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_31.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_32.n_25.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_32.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_3.n_522.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_3.n_522.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_4.n_503.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_4.n_503.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_5.n_459.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_5.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_6.n_441.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_6.n_441.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_7.n_435.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_7.n_435.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_8.n_427.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_8.n_427.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_9.n_343.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_9.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_0.n_4941.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_0.n_4941.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_10.n_103.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_10.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_11.n_82.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_11.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_12.n_60.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_12.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_13.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_14.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_15.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_16.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_1.n_4505.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_1.n_4505.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_2.n_3752.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_2.n_3752.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_3.n_1848.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_3.n_1848.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_5.n_1179.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_5.n_1179.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_8.n_182.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_8.n_182.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_0.n_1667.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_0.n_1667.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_1.n_243.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_1.n_243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_2.n_173.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_4.n_126.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_4.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_5.n_109.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_5.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_6.n_103.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_6.n_103.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_11.n_55.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_11.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_12.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_1.n_2518.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_1.n_2518.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_2.n_1214.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_2.n_1214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_3.n_385.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_3.n_385.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_4.n_242.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_4.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_5.n_146.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_5.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_6.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_7.n_123.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_7.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_8.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_9.n_69.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_9.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_0.n_947.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_0.n_947.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_10.n_43.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_10.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_11.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_12.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_1.n_563.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_1.n_563.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_2.n_430.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_2.n_430.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_3.n_250.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_3.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_4.n_123.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_4.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_5.n_101.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_5.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_6.n_82.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_6.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_7.n_78.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_7.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_8.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_0.n_1445.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_0.n_1445.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_10.n_67.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_10.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_11.n_48.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_11.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_12.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_13.n_28.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_13.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_1.n_992.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_1.n_992.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_2.n_844.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_2.n_844.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_3.n_831.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_3.n_831.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_4.n_514.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_4.n_514.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_5.n_295.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_5.n_295.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_6.n_289.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_6.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_7.n_149.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_7.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_8.n_117.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_8.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_9.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_0.n_18248.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_0.n_18248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_10.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_10.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_1.n_1239.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_1.n_1239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_2.n_671.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_2.n_671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_3.n_526.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_3.n_526.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_4.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_5.n_298.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_5.n_298.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_6.n_178.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_6.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_7.n_149.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_7.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_8.n_90.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_8.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_9.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_0.n_16057.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_0.n_16057.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_10.n_96.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_10.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_11.n_95.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_11.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_12.n_91.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_12.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_13.n_78.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_13.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_14.n_65.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_14.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_15.n_62.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_15.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_16.n_53.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_16.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_17.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_19.n_40.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_19.n_40.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_7.n_47.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_7.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_8.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_0.n_358.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_0.n_358.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_10.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_11.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_1.n_108.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_1.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_2.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_3.n_100.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_3.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_4.n_91.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_4.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_5.n_90.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_5.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_6.n_71.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_6.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_7.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_8.n_43.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_8.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_9.n_37.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_9.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_0.n_3278.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_0.n_3278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_10.n_291.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_10.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_11.n_255.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_11.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_12.n_236.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_12.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_13.n_174.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_13.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_14.n_170.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_14.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_15.n_146.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_15.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_16.n_125.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_16.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_17.n_110.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_17.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_18.n_99.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_18.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_19.n_91.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_19.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_1.n_2292.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_1.n_2292.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_20.n_57.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_20.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_21.n_47.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_21.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_22.n_40.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_22.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_23.n_37.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_23.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_24.n_32.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_24.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_25.n_26.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_25.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_2.n_1250.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_2.n_1250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_3.n_1213.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_3.n_1213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_4.n_882.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_4.n_882.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_5.n_758.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_5.n_758.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_6.n_551.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_6.n_551.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_7.n_472.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_7.n_472.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_8.n_369.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_8.n_369.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_9.n_322.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_9.n_322.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_0.n_3814.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_0.n_3814.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_10.n_340.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_10.n_340.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_11.n_303.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_11.n_303.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_12.n_280.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_12.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_13.n_273.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_13.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_14.n_263.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_14.n_263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_15.n_215.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_15.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_16.n_205.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_16.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_17.n_167.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_17.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_18.n_129.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_18.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_19.n_104.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_19.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_1.n_1564.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_1.n_1564.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_20.n_100.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_20.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_21.n_72.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_21.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_22.n_29.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_22.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_23.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_24.n_28.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_24.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_25.n_22.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_25.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_2.n_1347.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_2.n_1347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_3.n_712.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_3.n_712.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_4.n_683.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_4.n_683.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_5.n_561.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_5.n_561.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_6.n_470.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_6.n_470.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_7.n_433.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_7.n_433.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_8.n_413.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_8.n_413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_9.n_406.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_9.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_10.n_215.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_10.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_11.n_210.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_11.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_12.n_203.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_12.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_13.n_189.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_13.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_14.n_99.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_14.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_15.n_82.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_15.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_16.n_76.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_16.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_17.n_75.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_17.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_18.n_66.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_18.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_19.n_61.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_19.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_1.n_814.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_1.n_814.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_22.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_23.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_24.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_25.n_21.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_25.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_2.n_407.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_2.n_407.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_3.n_379.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_3.n_379.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_4.n_350.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_4.n_350.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_5.n_309.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_5.n_309.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_6.n_286.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_6.n_286.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_7.n_248.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_7.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_8.n_231.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_8.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_9.n_228.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_9.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_10.n_215.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_10.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_11.n_210.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_11.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_12.n_203.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_12.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_13.n_189.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_13.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_14.n_99.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_14.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_15.n_82.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_15.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_16.n_76.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_16.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_17.n_75.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_17.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_18.n_66.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_18.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_19.n_61.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_19.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_1.n_814.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_1.n_814.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_22.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_23.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_24.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_25.n_21.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_25.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_2.n_407.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_2.n_407.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_3.n_379.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_3.n_379.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_4.n_350.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_4.n_350.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_5.n_309.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_5.n_309.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_6.n_286.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_6.n_286.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_7.n_248.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_7.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_8.n_231.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_8.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_9.n_228.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_9.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.PWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_0.n_2952.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_0.n_2952.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_10.n_250.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_10.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_11.n_214.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_11.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_12.n_189.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_12.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_13.n_163.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_13.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_14.n_147.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_14.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_15.n_140.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_15.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_16.n_133.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_16.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_17.n_72.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_17.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_18.n_61.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_18.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_19.n_60.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_19.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_1.n_1539.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_1.n_1539.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_20.n_55.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_20.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_21.n_47.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_21.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_22.n_36.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_22.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_23.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_24.n_22.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_24.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_2.n_1524.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_2.n_1524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_3.n_982.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_3.n_982.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_4.n_686.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_4.n_686.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_5.n_433.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_5.n_433.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_6.n_427.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_6.n_427.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_7.n_418.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_7.n_418.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_8.n_364.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_8.n_364.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_9.n_320.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_9.n_320.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_0.n_391.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_0.n_391.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_10.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_11.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_12.n_38.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_12.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_13.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_14.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_15.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_1.n_116.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_1.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_2.n_106.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_2.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_3.n_101.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_3.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_4.n_72.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_4.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_5.n_71.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_5.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_6.n_71.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_6.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_7.n_68.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_7.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_8.n_47.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_8.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_9.n_44.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_9.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_0.n_1279.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_0.n_1279.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_11.n_104.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_11.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_12.n_104.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_12.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_13.n_86.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_13.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_14.n_79.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_14.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_15.n_43.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_15.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_16.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_17.n_33.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_17.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_1.n_1161.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_1.n_1161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_2.n_1145.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_2.n_1145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_3.n_556.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_3.n_556.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_4.n_401.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_4.n_401.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_5.n_392.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_5.n_392.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_6.n_312.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_6.n_312.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_7.n_218.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_7.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_8.n_213.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_8.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_9.n_187.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_9.n_187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_0.n_6261.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_0.n_6261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_10.n_254.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_10.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_11.n_172.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_11.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_12.n_133.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_12.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_13.n_130.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_13.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_14.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_15.n_72.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_15.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_16.n_66.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_16.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_17.n_62.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_17.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_18.n_58.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_18.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_19.n_53.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_19.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_1.n_2226.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_1.n_2226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_20.n_44.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_20.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_21.n_37.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_21.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_22.n_29.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_22.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_23.n_24.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_23.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_24.n_22.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_24.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_25.n_21.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_25.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_2.n_1711.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_2.n_1711.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_3.n_1194.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_3.n_1194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_4.n_883.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_4.n_883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_5.n_839.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_5.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_6.n_718.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_6.n_718.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_7.n_687.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_7.n_687.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_8.n_462.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_8.n_462.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_9.n_270.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_9.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_0.n_3660.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_0.n_3660.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_10.n_71.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_10.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_11.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_12.n_65.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_12.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_13.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_14.n_29.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_14.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_1.n_573.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_1.n_573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_2.n_318.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_2.n_318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_3.n_286.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_3.n_286.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_4.n_217.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_4.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_5.n_167.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_5.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_6.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_7.n_100.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_7.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_8.n_98.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_8.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_9.n_93.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_9.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_0.n_4485.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_0.n_4485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_10.n_323.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_10.n_323.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_11.n_258.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_11.n_258.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_12.n_247.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_12.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_13.n_191.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_13.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_14.n_158.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_14.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_15.n_138.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_15.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_16.n_88.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_16.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_17.n_70.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_17.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_18.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_19.n_36.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_19.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_1.n_3240.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_1.n_3240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_2.n_1947.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_2.n_1947.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_3.n_1946.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_3.n_1946.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_4.n_1288.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_4.n_1288.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_5.n_867.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_5.n_867.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_6.n_784.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_6.n_784.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_7.n_648.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_7.n_648.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_8.n_579.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_8.n_579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_9.n_447.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_9.n_447.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_0.n_1012.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_0.n_1012.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_10.n_179.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_10.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_11.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_12.n_145.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_12.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_13.n_138.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_13.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_14.n_124.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_14.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_15.n_113.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_15.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_16.n_94.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_16.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_17.n_86.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_17.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_18.n_58.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_18.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_19.n_42.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_19.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_1.n_805.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_1.n_805.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_20.n_39.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_20.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_21.n_33.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_21.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_22.n_22.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_22.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_2.n_720.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_2.n_720.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_3.n_346.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_3.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_4.n_270.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_4.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_5.n_269.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_5.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_6.n_250.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_6.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_7.n_237.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_7.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_8.n_219.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_8.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_9.n_199.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_9.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_0.n_2530.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_0.n_2530.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_10.n_56.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_10.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_11.n_48.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_11.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_12.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_1.n_1728.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_1.n_1728.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_2.n_1235.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_2.n_1235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_3.n_415.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_3.n_415.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_4.n_307.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_4.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_5.n_231.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_5.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_6.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_7.n_163.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_7.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_8.n_78.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_8.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_9.n_70.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_9.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_0.n_7707.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_0.n_7707.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_10.n_86.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_10.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_11.n_78.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_11.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_12.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_13.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_14.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_1.n_1472.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_1.n_1472.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_2.n_1273.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_2.n_1273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_3.n_594.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_3.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_4.n_561.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_4.n_561.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_5.n_424.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_5.n_424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_6.n_411.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_6.n_411.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_7.n_318.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_7.n_318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_8.n_224.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_8.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_9.n_172.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_9.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_0.n_11531.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_0.n_11531.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_10.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_11.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_1.n_9604.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_1.n_9604.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_2.n_4086.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_2.n_4086.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_3.n_249.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_3.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_4.n_233.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_4.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_5.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_6.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_7.n_72.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_7.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_8.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000EUM.bestfold.profile.pattern_0.n_1796.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000EUM.bestfold.profile.pattern_0.n_1796.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_0.n_8731.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_0.n_8731.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_10.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_10.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_11.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_1.n_3779.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_1.n_3779.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_2.n_2400.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_2.n_2400.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_3.n_660.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_3.n_660.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_4.n_194.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_4.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_5.n_141.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_5.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_6.n_137.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_6.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_7.n_87.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_7.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_8.n_83.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_8.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_0.n_13583.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_0.n_13583.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_10.n_86.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_10.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_11.n_69.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_11.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_12.n_62.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_12.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_13.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_14.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_15.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_1.n_2622.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_1.n_2622.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_2.n_627.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_2.n_627.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_3.n_457.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_3.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_4.n_362.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_4.n_362.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_5.n_317.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_5.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_6.n_280.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_6.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_7.n_278.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_7.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_8.n_217.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_8.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_9.n_126.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_9.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_0.n_14948.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_0.n_14948.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_10.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_11.n_66.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_11.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_12.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_13.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_14.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_15.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_15.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_16.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_17.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_18.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_19.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_1.n_8174.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_1.n_8174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_2.n_4261.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_2.n_4261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_3.n_512.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_3.n_512.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_4.n_291.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_4.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_5.n_239.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_5.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_6.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_7.n_183.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_7.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_0.n_5609.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_0.n_5609.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_10.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_11.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_12.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_14.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_1.n_4708.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_1.n_4708.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_2.n_2781.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_2.n_2781.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_3.n_892.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_3.n_892.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_4.n_595.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_4.n_595.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_5.n_557.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_5.n_557.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_6.n_495.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_6.n_495.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_7.n_324.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_7.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_8.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_9.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_0.n_6283.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_0.n_6283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_10.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_1.n_412.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_1.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_2.n_386.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_2.n_386.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_0.n_8778.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_0.n_8778.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_10.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_10.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_1.n_3957.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_1.n_3957.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_2.n_3477.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_2.n_3477.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_3.n_549.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_3.n_549.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_4.n_487.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_4.n_487.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_5.n_235.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_5.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_6.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_7.n_143.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_7.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_8.n_112.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_8.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_9.n_55.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_9.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_0.n_9922.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_0.n_9922.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_10.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_11.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_1.n_2387.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_1.n_2387.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_2.n_1154.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_2.n_1154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_3.n_744.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_3.n_744.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_4.n_343.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_4.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_5.n_320.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_5.n_320.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_6.n_191.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_6.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_7.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_8.n_75.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_8.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_9.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_0.n_8283.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_0.n_8283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_10.n_146.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_10.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_11.n_105.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_11.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_12.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_12.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_13.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_14.n_50.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_14.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_15.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_1.n_2779.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_1.n_2779.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_2.n_958.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_2.n_958.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_3.n_574.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_3.n_574.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_4.n_479.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_4.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_5.n_404.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_5.n_404.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_6.n_275.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_6.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_7.n_201.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_7.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_8.n_196.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_8.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_9.n_179.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_9.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_0.n_18250.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_0.n_18250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_10.n_111.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_10.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_11.n_108.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_11.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_12.n_81.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_12.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_13.n_79.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_13.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_14.n_39.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_14.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_15.n_29.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_15.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_1.n_4600.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_1.n_4600.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_2.n_1812.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_2.n_1812.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_3.n_558.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_3.n_558.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_4.n_195.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_4.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_5.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_5.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_6.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_7.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_8.n_123.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_8.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_9.n_121.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_9.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_0.n_5267.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_0.n_5267.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_1.n_391.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_1.n_391.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_2.n_157.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_2.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_3.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_4.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_5.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_0.n_9647.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_0.n_9647.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_10.n_156.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_10.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_11.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_12.n_117.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_12.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_13.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_14.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_15.n_41.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_15.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_16.n_29.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_16.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_17.n_26.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_17.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_1.n_7692.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_1.n_7692.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_2.n_6885.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_2.n_6885.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_3.n_4455.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_3.n_4455.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_4.n_2057.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_4.n_2057.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_5.n_1151.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_5.n_1151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_6.n_1051.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_6.n_1051.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_7.n_672.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_7.n_672.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_8.n_355.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_8.n_355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_9.n_181.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_9.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_0.n_10987.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_0.n_10987.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_10.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_1.n_2515.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_1.n_2515.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_2.n_2144.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_2.n_2144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_3.n_929.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_3.n_929.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_4.n_677.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_4.n_677.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_5.n_332.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_5.n_332.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_6.n_177.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_6.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_7.n_152.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_7.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_8.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_9.n_48.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_9.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_0.n_3895.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_0.n_3895.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_1.n_660.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_1.n_660.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_2.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_0.n_11278.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_0.n_11278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_10.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_1.n_3966.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_1.n_3966.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_2.n_1117.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_2.n_1117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_3.n_1086.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_3.n_1086.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_4.n_470.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_4.n_470.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_5.n_421.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_5.n_421.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_6.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_7.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_8.n_58.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_8.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_9.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_0.n_8724.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_0.n_8724.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_10.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_10.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_11.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_12.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_13.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_1.n_1957.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_1.n_1957.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_2.n_1220.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_2.n_1220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_3.n_494.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_3.n_494.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_4.n_349.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_4.n_349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_5.n_203.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_5.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_6.n_156.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_6.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_7.n_124.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_7.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_8.n_97.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_8.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_9.n_73.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_9.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_0.n_7707.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_0.n_7707.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_10.n_86.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_10.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_11.n_78.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_11.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_12.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_13.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_14.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_1.n_1472.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_1.n_1472.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_2.n_1273.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_2.n_1273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_3.n_594.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_3.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_4.n_561.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_4.n_561.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_5.n_424.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_5.n_424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_6.n_411.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_6.n_411.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_7.n_318.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_7.n_318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_8.n_224.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_8.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_9.n_172.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_9.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_0.n_11531.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_0.n_11531.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_10.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_11.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_1.n_9604.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_1.n_9604.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_2.n_4086.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_2.n_4086.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_3.n_249.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_3.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_4.n_233.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_4.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_5.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_6.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_7.n_72.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_7.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_8.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000EUM.bestfold.profile.pattern_0.n_1796.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000EUM.bestfold.profile.pattern_0.n_1796.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_0.n_8731.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_0.n_8731.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_10.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_10.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_11.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_1.n_3779.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_1.n_3779.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_2.n_2400.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_2.n_2400.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_3.n_660.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_3.n_660.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_4.n_194.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_4.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_5.n_141.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_5.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_6.n_137.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_6.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_7.n_87.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_7.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_8.n_83.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_8.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_0.n_13583.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_0.n_13583.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_10.n_86.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_10.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_11.n_69.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_11.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_12.n_62.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_12.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_13.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_14.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_15.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_1.n_2622.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_1.n_2622.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_2.n_627.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_2.n_627.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_3.n_457.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_3.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_4.n_362.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_4.n_362.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_5.n_317.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_5.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_6.n_280.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_6.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_7.n_278.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_7.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_8.n_217.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_8.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_9.n_126.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_9.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_0.n_14948.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_0.n_14948.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_10.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_11.n_66.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_11.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_12.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_13.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_14.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_15.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_15.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_16.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_17.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_18.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_19.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_1.n_8174.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_1.n_8174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_2.n_4261.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_2.n_4261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_3.n_512.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_3.n_512.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_4.n_291.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_4.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_5.n_239.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_5.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_6.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_7.n_183.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_7.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_0.n_5609.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_0.n_5609.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_10.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_11.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_12.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_14.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_1.n_4708.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_1.n_4708.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_2.n_2781.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_2.n_2781.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_3.n_892.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_3.n_892.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_4.n_595.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_4.n_595.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_5.n_557.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_5.n_557.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_6.n_495.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_6.n_495.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_7.n_324.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_7.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_8.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_9.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_0.n_6283.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_0.n_6283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_10.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_1.n_412.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_1.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_2.n_386.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_2.n_386.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_3.n_281.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_3.n_281.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_4.n_106.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_4.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_5.n_76.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_5.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_6.n_68.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_6.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_7.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_8.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_9.n_44.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_9.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_6.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_7.n_143.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_7.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_8.n_112.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_8.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_9.n_55.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_9.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_0.n_9922.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_0.n_9922.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_10.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_11.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_1.n_2387.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_1.n_2387.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_2.n_1154.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_2.n_1154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_3.n_744.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_3.n_744.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_4.n_343.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_4.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_5.n_320.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_5.n_320.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_6.n_191.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_6.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_7.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_8.n_75.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_8.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_9.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_0.n_8283.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_0.n_8283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_10.n_146.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_10.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_11.n_105.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_11.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_12.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_12.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_13.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_14.n_50.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_14.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_15.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_1.n_2779.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_1.n_2779.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_2.n_958.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_2.n_958.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_3.n_574.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_3.n_574.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_4.n_479.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_4.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_5.n_404.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_5.n_404.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_6.n_275.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_6.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_7.n_201.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_7.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_8.n_196.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_8.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_9.n_179.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_9.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_0.n_18250.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_0.n_18250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_10.n_111.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_10.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_11.n_108.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_11.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_12.n_81.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_12.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_13.n_79.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_13.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_14.n_39.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_14.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_15.n_29.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_15.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_1.n_4600.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_1.n_4600.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_2.n_1812.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_2.n_1812.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_3.n_558.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_3.n_558.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_4.n_195.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_4.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_5.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_5.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_6.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_7.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_8.n_123.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_8.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_9.n_121.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_9.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_0.n_5267.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_0.n_5267.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_1.n_391.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_1.n_391.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_2.n_157.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_2.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_3.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_4.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_5.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_0.n_9647.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_0.n_9647.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_10.n_156.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_10.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_11.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_12.n_117.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_12.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_13.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_14.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_15.n_41.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_15.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_16.n_29.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_16.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_17.n_26.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_17.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_1.n_7692.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_1.n_7692.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_2.n_6885.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_2.n_6885.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_3.n_4455.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_3.n_4455.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_4.n_2057.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_4.n_2057.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_5.n_1151.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_5.n_1151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_6.n_1051.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_6.n_1051.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_7.n_672.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_7.n_672.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_8.n_355.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_8.n_355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_9.n_181.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_9.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_0.n_10987.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_0.n_10987.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_10.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_1.n_2515.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_1.n_2515.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_2.n_2144.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_2.n_2144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_3.n_929.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_3.n_929.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_4.n_677.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_4.n_677.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_5.n_332.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_5.n_332.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_6.n_177.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_6.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_7.n_152.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_7.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_8.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_9.n_48.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_9.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_0.n_3895.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_0.n_3895.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_1.n_660.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_1.n_660.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_2.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_0.n_11278.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_0.n_11278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_10.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_1.n_3966.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_1.n_3966.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_2.n_1117.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_2.n_1117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_3.n_1086.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_3.n_1086.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_4.n_470.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_4.n_470.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_5.n_421.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_5.n_421.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_6.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_7.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_8.n_58.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_8.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_9.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_0.n_8724.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_0.n_8724.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_10.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_10.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_11.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_12.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_13.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_1.n_1957.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_1.n_1957.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_2.n_1220.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_2.n_1220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_3.n_494.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_3.n_494.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_4.n_349.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_4.n_349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_5.n_203.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_5.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_6.n_156.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_6.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_7.n_124.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_7.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_8.n_97.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_8.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_9.n_73.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_9.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_0.n_8193.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_0.n_8193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_1.n_388.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_1.n_388.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_3.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_0.n_1492.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_0.n_1492.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_10.n_133.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_10.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_11.n_128.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_11.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_12.n_127.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_12.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_13.n_112.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_13.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_14.n_99.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_14.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_15.n_84.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_15.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_16.n_73.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_16.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_17.n_59.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_17.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_18.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_1.n_952.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_1.n_952.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_2.n_586.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_2.n_586.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_3.n_506.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_3.n_506.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_4.n_468.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_4.n_468.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_5.n_300.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_5.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_6.n_234.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_6.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_7.n_225.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_7.n_225.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_8.n_164.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_8.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_9.n_154.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_9.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_4.n_173.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_4.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_5.n_172.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_5.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_6.n_156.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_6.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_7.n_139.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_7.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_8.n_135.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_8.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_9.n_134.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_9.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_0.n_1196.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_0.n_1196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_1.n_1055.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_1.n_1055.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_2.n_309.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_2.n_309.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_3.n_241.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_3.n_241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_4.n_149.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_4.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_5.n_76.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_5.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_6.n_49.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_6.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_7.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_8.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_0.n_1039.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_0.n_1039.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_1.n_703.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_1.n_703.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_2.n_247.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_2.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_3.n_122.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_3.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_4.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_5.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_0.n_189.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_0.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_10.n_43.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_10.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_11.n_31.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_11.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_12.n_27.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_12.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_13.n_27.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_13.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_14.n_24.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_14.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_15.n_23.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_15.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_1.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_2.n_75.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_2.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_3.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_4.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_5.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_6.n_64.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_6.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_7.n_61.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_7.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_8.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_0.n_132.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_0.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_10.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_11.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_12.n_70.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_12.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_13.n_69.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_13.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_14.n_68.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_14.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_15.n_65.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_15.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_16.n_63.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_16.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_17.n_59.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_17.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_18.n_56.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_18.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_19.n_55.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_19.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_1.n_128.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_1.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_20.n_55.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_20.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_21.n_54.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_21.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_22.n_49.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_22.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_23.n_48.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_23.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_24.n_37.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_24.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_25.n_35.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_25.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_26.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_27.n_33.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_27.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_28.n_30.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_28.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_29.n_28.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_29.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_2.n_126.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_2.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_3.n_114.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_3.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_4.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_5.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_6.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_7.n_101.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_7.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_8.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_9.n_83.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_9.n_83.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_10.n_136.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_10.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_11.n_126.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_11.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_12.n_97.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_12.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_13.n_77.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_13.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_14.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_1.n_364.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_1.n_364.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_2.n_285.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_2.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_3.n_275.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_3.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_4.n_270.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_4.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_5.n_267.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_5.n_267.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_6.n_264.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_6.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_7.n_254.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_7.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_8.n_218.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_8.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_9.n_153.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_9.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_0.n_3165.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_0.n_3165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_10.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_11.n_82.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_11.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_12.n_62.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_12.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_13.n_43.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_13.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_1.n_1792.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_1.n_1792.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_2.n_1692.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_2.n_1692.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_4.n_368.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_4.n_368.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_0.n_1007.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_0.n_1007.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_10.n_97.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_10.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_11.n_89.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_11.n_89.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_14.n_74.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_14.n_74.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_8.n_185.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_8.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_9.n_155.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_9.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_0.n_142.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_0.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_1.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_2.n_91.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_2.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_3.n_87.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_3.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_4.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_6.n_49.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_6.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_7.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_8.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_9.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_0.n_2449.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_0.n_2449.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_10.n_50.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_10.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_11.n_28.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_11.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_12.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_13.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_1.n_2284.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_1.n_2284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_2.n_1676.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_2.n_1676.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_3.n_1266.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_3.n_1266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_4.n_771.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_4.n_771.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_5.n_206.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_5.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_6.n_205.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_6.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_7.n_166.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_7.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_8.n_117.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_8.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_9.n_71.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_9.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_0.n_926.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_0.n_926.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_10.n_91.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_10.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_11.n_84.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_11.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_12.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_13.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_14.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_16.n_40.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_16.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_17.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_1.n_405.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_1.n_405.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_2.n_224.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_2.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_3.n_185.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_3.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_4.n_178.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_4.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_5.n_153.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_5.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_6.n_135.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_6.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_7.n_127.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_7.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_8.n_111.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_8.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_9.n_92.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_9.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_0.n_926.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_0.n_926.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_10.n_91.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_10.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_11.n_84.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_11.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_12.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_13.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_14.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_16.n_40.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_16.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_17.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_1.n_405.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_1.n_405.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_2.n_224.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_2.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_3.n_185.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_3.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_4.n_178.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_4.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_5.n_153.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_5.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_6.n_135.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_6.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_7.n_127.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_7.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_8.n_111.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_8.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_9.n_92.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_9.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_0.n_2033.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_0.n_2033.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_1.n_1643.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_1.n_1643.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_2.n_692.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_2.n_692.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_3.n_604.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_3.n_604.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_4.n_499.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_4.n_499.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_5.n_231.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_5.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_6.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_7.n_141.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_7.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_8.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_9.n_31.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_9.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_0.n_2994.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_0.n_2994.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_10.n_146.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_10.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_11.n_106.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_11.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_12.n_98.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_12.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_13.n_90.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_13.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_14.n_81.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_14.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_15.n_80.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_15.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_16.n_70.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_16.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_17.n_66.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_17.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_18.n_40.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_18.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_19.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_1.n_468.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_1.n_468.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_20.n_24.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_20.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_21.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_2.n_228.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_2.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_3.n_224.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_3.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_4.n_213.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_4.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_5.n_188.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_5.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_6.n_187.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_6.n_187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_7.n_170.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_7.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_8.n_155.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_8.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_9.n_154.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_9.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_0.n_624.PWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_0.n_624.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_1.n_375.PWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_1.n_375.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_2.n_153.PWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_2.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_3.n_82.PWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_3.n_82.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_10.n_237.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_10.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_11.n_91.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_11.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_12.n_73.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_12.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_13.n_59.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_13.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_14.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_15.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_1.n_1946.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_1.n_1946.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_2.n_1914.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_2.n_1914.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_3.n_1885.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_3.n_1885.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_4.n_1424.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_4.n_1424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_5.n_674.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_5.n_674.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_6.n_537.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_6.n_537.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_7.n_377.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_7.n_377.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_8.n_372.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_8.n_372.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_9.n_310.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_9.n_310.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_0.n_1191.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_0.n_1191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_10.n_123.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_10.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_11.n_82.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_11.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_12.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_13.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_14.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_16.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_1.n_670.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_1.n_670.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_2.n_437.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_2.n_437.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_3.n_383.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_3.n_383.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_6.n_209.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_6.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_7.n_207.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_7.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_8.n_202.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_8.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_9.n_198.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_9.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.PWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_0.n_426.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_0.n_426.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_10.n_87.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_10.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_11.n_81.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_11.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_12.n_77.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_12.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_13.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_14.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_15.n_45.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_18.n_24.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_18.n_24.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_1.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_2.n_135.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_2.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_3.n_134.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_3.n_134.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_1.n_520.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_1.n_520.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_20.n_83.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_20.n_83.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_3.n_398.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_3.n_398.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_13.n_66.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_14.n_149.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_14.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_15.n_129.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_15.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_16.n_107.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_16.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_17.n_105.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_17.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_18.n_102.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_18.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_19.n_95.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_19.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_1.n_520.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_1.n_520.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_20.n_83.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_20.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_21.n_77.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_21.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_2.n_450.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_2.n_450.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_3.n_398.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_3.n_398.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_4.n_344.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_4.n_344.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_5.n_337.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_5.n_337.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_6.n_326.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_6.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_7.n_308.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_7.n_308.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_8.n_282.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_8.n_282.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_9.n_226.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_9.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF404-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_0.n_1776.PWM.meme motif-alignments-all-vs-all/ZNF404/ZNF404-201-vs-ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_0.n_1776.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF404-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all/ZNF404/ZNF404-201-vs-ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_1.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF404-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_2.n_49.PWM.meme motif-alignments-all-vs-all/ZNF404/ZNF404-201-vs-ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_2.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_0.n_353.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_0.n_353.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_10.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_11.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_1.n_182.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_1.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_2.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_3.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_4.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_5.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_6.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_7.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_9.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_0.n_2496.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_0.n_2496.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_10.n_106.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_10.n_106.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_1.n_80.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_1.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_2.n_74.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_2.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_3.n_71.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_3.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_4.n_69.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_4.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_5.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_6.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_7.n_58.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_7.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_8.n_51.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_8.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_9.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_0.n_573.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_0.n_573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_10.n_115.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_10.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_11.n_113.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_11.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_12.n_112.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_12.n_112.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_16.n_62.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_16.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_17.n_60.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_17.n_60.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_14.n_84.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_14.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_15.n_53.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_15.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_16.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_1.n_812.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_1.n_812.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_2.n_430.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_2.n_430.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_3.n_376.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_3.n_376.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_4.n_283.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_4.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_5.n_179.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_5.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_6.n_160.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_6.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_7.n_158.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_7.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_8.n_150.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_8.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_9.n_135.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_9.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_0.n_4110.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_0.n_4110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_1.n_3423.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_1.n_3423.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_2.n_179.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_2.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_3.n_158.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_3.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_5.n_91.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_5.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_6.n_89.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_6.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_7.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_8.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_1.n_347.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_1.n_347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_2.n_160.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_2.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_3.n_125.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_3.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_4.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_6.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_0.n_4110.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_0.n_4110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_1.n_3423.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_1.n_3423.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_2.n_179.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_2.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_3.n_158.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_3.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_4.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_5.n_91.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_5.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_6.n_89.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_6.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_7.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_8.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_1.n_347.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_1.n_347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_2.n_160.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_2.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_3.n_125.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_3.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_4.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_6.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_0.n_4806.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_0.n_4806.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_10.n_288.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_10.n_288.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_11.n_287.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_11.n_287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_12.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_12.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_13.n_178.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_13.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_14.n_152.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_14.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_15.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_15.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_16.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_16.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_17.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_1.n_4037.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_1.n_4037.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_2.n_2352.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_2.n_2352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_3.n_1815.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_3.n_1815.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_4.n_1515.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_4.n_1515.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_5.n_1363.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_5.n_1363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_6.n_1099.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_6.n_1099.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_7.n_797.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_7.n_797.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_8.n_390.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_8.n_390.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_9.n_382.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_9.n_382.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_0.n_864.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_0.n_864.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_10.n_88.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_10.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_11.n_79.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_11.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_12.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_13.n_72.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_13.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_14.n_62.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_14.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_15.n_60.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_15.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_16.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_16.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_17.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_17.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_18.n_37.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_18.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_19.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_19.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_1.n_188.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_1.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_20.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_20.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_21.n_29.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_21.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_22.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_22.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_23.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_23.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_24.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_25.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_25.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_2.n_170.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_2.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_3.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_3.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_4.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_4.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_5.n_132.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_5.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_6.n_118.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_6.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_7.n_109.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_7.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_8.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_8.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_9.n_91.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_9.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_0.n_124.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_0.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_10.n_49.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_10.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_11.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_12.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_13.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_14.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_15.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_1.n_110.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_1.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_2.n_105.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_2.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_3.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_4.n_75.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_4.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_5.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_6.n_69.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_6.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_7.n_68.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_7.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_8.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_9.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_0.n_5368.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_0.n_5368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_10.n_477.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_10.n_477.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_11.n_322.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_11.n_322.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_12.n_285.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_12.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_13.n_240.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_13.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_14.n_154.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_14.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_15.n_150.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_15.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_16.n_122.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_16.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_17.n_50.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_17.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_18.n_46.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_18.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_19.n_40.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_19.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_1.n_3281.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_1.n_3281.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_20.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_21.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_22.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_23.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_24.n_20.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_24.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_2.n_2246.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_2.n_2246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_3.n_1784.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_3.n_1784.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_4.n_1338.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_4.n_1338.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_5.n_973.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_5.n_973.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_6.n_568.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_6.n_568.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_7.n_557.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_7.n_557.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_8.n_504.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_8.n_504.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_9.n_480.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_9.n_480.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_0.n_1256.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_0.n_1256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_10.n_63.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_10.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_11.n_63.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_11.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_12.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_13.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_14.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_16.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_17.n_26.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_17.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_1.n_1066.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_1.n_1066.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_3.n_357.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_3.n_357.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_4.n_303.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_4.n_303.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_5.n_127.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_5.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_6.n_98.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_6.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_7.n_85.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_7.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_9.n_63.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_9.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_0.n_1554.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_0.n_1554.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_10.n_116.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_10.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_11.n_80.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_11.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_12.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_13.n_26.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_13.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_14.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_15.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_1.n_1258.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_1.n_1258.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_2.n_1073.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_2.n_1073.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_3.n_503.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_3.n_503.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_4.n_334.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_4.n_334.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_5.n_234.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_5.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_6.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_7.n_151.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_7.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_8.n_150.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_8.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_9.n_146.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_9.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_0.n_546.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_0.n_546.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_10.n_34.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_10.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_11.n_30.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_11.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_12.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_1.n_461.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_1.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_2.n_343.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_2.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_3.n_158.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_3.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_4.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_5.n_71.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_5.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_6.n_64.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_6.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_7.n_63.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_7.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_8.n_46.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_8.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_9.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_0.n_1616.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_0.n_1616.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_10.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_11.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_12.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_1.n_872.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_1.n_872.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_2.n_744.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_2.n_744.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_3.n_534.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_3.n_534.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_4.n_531.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_4.n_531.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_5.n_265.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_5.n_265.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_6.n_253.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_6.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_7.n_147.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_7.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_8.n_95.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_8.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_9.n_82.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_9.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_0.n_1153.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_0.n_1153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_10.n_56.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_10.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_11.n_45.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_11.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_12.n_27.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_12.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_13.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_1.n_427.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_1.n_427.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_2.n_230.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_2.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_3.n_221.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_3.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_4.n_141.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_4.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_5.n_116.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_5.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_6.n_109.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_6.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_7.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_9.n_66.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_9.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_0.n_3536.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_0.n_3536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_10.n_36.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_10.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_1.n_3338.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_1.n_3338.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_2.n_284.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_2.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_3.n_238.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_3.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_4.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_5.n_77.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_5.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_6.n_71.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_6.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_7.n_67.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_7.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_8.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_9.n_56.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_9.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_0.n_63.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_0.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_10.n_37.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_10.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_11.n_37.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_11.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_13.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_14.n_30.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_14.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_15.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_16.n_29.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_16.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_17.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_18.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_19.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_1.n_59.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_1.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_20.n_24.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_20.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_21.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_2.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_3.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_4.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_5.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_6.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_7.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_8.n_44.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_8.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_9.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_0.n_4705.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_0.n_4705.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_1.n_2047.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_1.n_2047.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_2.n_480.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_2.n_480.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_3.n_392.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_3.n_392.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_4.n_146.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_4.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_5.n_123.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_5.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_6.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_0.n_407.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_0.n_407.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_11.n_40.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_11.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_12.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_13.n_27.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_13.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_14.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_15.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_1.n_185.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_1.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_2.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_3.n_97.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_3.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_4.n_94.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_4.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_5.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_6.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_7.n_55.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_7.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_8.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_9.n_41.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_9.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_0.n_18074.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_0.n_18074.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_1.n_799.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_1.n_799.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_2.n_621.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_2.n_621.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_3.n_445.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_3.n_445.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_4.n_189.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_4.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_5.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_6.n_64.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_6.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_7.n_55.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_7.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_8.n_44.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_8.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_9.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_0.n_11721.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_0.n_11721.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_10.n_264.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_10.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_11.n_258.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_11.n_258.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_12.n_181.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_12.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_13.n_170.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_13.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_14.n_164.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_14.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_15.n_114.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_15.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_16.n_108.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_16.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_17.n_108.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_17.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_18.n_102.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_18.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_19.n_74.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_19.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_1.n_2979.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_1.n_2979.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_20.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_21.n_36.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_21.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_22.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_24.n_28.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_24.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_25.n_28.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_25.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_26.n_27.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_26.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_2.n_2098.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_2.n_2098.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_3.n_1926.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_3.n_1926.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_4.n_1014.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_4.n_1014.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_5.n_851.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_5.n_851.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_6.n_592.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_6.n_592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_7.n_502.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_7.n_502.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_8.n_419.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_8.n_419.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_9.n_349.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_9.n_349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_0.n_15803.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_0.n_15803.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_10.n_213.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_10.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_11.n_198.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_11.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_12.n_177.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_12.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_13.n_171.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_13.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_14.n_166.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_14.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_15.n_165.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_15.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_16.n_165.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_16.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_17.n_158.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_17.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_18.n_149.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_18.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_19.n_137.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_19.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_1.n_2911.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_1.n_2911.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_20.n_135.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_20.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_21.n_129.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_21.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_22.n_125.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_22.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_23.n_113.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_23.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_24.n_106.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_24.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_25.n_105.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_25.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_26.n_100.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_26.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_27.n_99.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_27.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_28.n_88.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_28.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_29.n_86.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_29.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_2.n_754.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_2.n_754.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_30.n_76.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_30.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_31.n_64.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_31.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_32.n_55.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_32.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_33.n_54.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_33.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_34.n_48.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_34.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_35.n_36.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_35.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_36.n_29.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_36.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_37.n_27.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_37.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_38.n_22.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_38.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_3.n_707.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_3.n_707.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_4.n_694.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_4.n_694.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_5.n_535.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_5.n_535.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_6.n_410.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_6.n_410.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_7.n_353.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_7.n_353.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_8.n_262.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_8.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_9.n_214.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_9.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_0.n_3584.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_0.n_3584.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_10.n_71.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_10.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_11.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_12.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_13.n_39.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_13.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_14.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_1.n_1935.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_1.n_1935.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_2.n_1445.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_2.n_1445.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_3.n_316.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_3.n_316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_4.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_5.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_6.n_236.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_6.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_7.n_230.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_7.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_8.n_180.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_8.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_9.n_71.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_9.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_0.n_6129.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_0.n_6129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_10.n_61.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_10.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_11.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_12.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_1.n_1213.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_1.n_1213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_2.n_771.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_2.n_771.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_3.n_597.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_3.n_597.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_4.n_518.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_4.n_518.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_5.n_408.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_5.n_408.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_6.n_319.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_6.n_319.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_7.n_266.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_7.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_8.n_174.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_8.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_9.n_63.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_9.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_0.n_15253.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_0.n_15253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_10.n_255.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_10.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_11.n_205.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_11.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_12.n_192.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_12.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_13.n_169.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_13.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_14.n_153.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_14.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_15.n_146.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_15.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_16.n_127.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_16.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_17.n_81.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_17.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_18.n_56.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_18.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_19.n_44.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_19.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_1.n_1359.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_1.n_1359.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_20.n_42.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_20.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_21.n_33.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_21.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_22.n_29.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_22.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_23.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_24.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_2.n_1042.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_2.n_1042.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_3.n_988.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_3.n_988.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_4.n_784.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_4.n_784.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_5.n_512.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_5.n_512.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_6.n_474.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_6.n_474.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_7.n_450.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_7.n_450.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_8.n_386.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_8.n_386.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_9.n_327.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_9.n_327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_0.n_4079.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_0.n_4079.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_1.n_413.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_1.n_413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_2.n_306.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_2.n_306.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_3.n_211.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_3.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_4.n_211.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_4.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_5.n_171.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_5.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_6.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_7.n_26.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_7.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_9.n_22.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_9.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_0.n_2803.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_0.n_2803.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_10.n_44.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_10.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_11.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_12.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_1.n_2043.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_1.n_2043.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_2.n_490.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_2.n_490.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_3.n_271.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_3.n_271.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_4.n_200.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_4.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_5.n_176.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_5.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_6.n_88.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_6.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_7.n_61.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_7.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_8.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_9.n_59.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_9.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_0.n_1777.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_0.n_1777.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_10.n_263.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_10.n_263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_11.n_243.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_11.n_243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_12.n_218.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_12.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_13.n_166.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_13.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_14.n_100.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_14.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_15.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_16.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_1.n_834.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_1.n_834.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_2.n_606.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_2.n_606.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_3.n_387.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_3.n_387.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_4.n_382.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_4.n_382.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_5.n_324.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_5.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_6.n_323.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_6.n_323.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_7.n_316.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_7.n_316.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_9.n_282.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_9.n_282.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_0.n_16840.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_0.n_16840.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_1.n_139.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_1.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_2.n_118.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_2.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_0.n_15464.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_0.n_15464.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_10.n_116.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_10.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_11.n_107.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_11.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_12.n_103.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_12.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_13.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_14.n_89.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_14.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_15.n_77.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_15.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_16.n_76.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_16.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_17.n_69.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_17.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_18.n_45.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_18.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_1.n_449.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_1.n_449.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_2.n_283.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_2.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_3.n_209.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_3.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_4.n_201.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_4.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_5.n_179.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_5.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_6.n_178.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_6.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_7.n_149.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_7.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_8.n_133.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_8.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_9.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_0.n_13401.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_0.n_13401.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_10.n_144.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_10.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_11.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_12.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_13.n_90.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_13.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_14.n_84.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_14.n_84.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_16.n_82.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_16.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_17.n_80.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_17.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_18.n_62.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_18.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_19.n_31.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_19.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_1.n_746.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_1.n_746.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_20.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_2.n_728.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_2.n_728.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_3.n_676.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_3.n_676.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_4.n_486.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_4.n_486.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_5.n_243.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_5.n_243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_6.n_230.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_6.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_7.n_206.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_7.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_8.n_176.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_8.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_9.n_155.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_9.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_0.n_713.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_0.n_713.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_10.n_40.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_10.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_1.n_127.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_1.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_2.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_3.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_4.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_5.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_6.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_7.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_8.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_9.n_40.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_9.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_0.n_11288.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_0.n_11288.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_10.n_72.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_10.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_11.n_45.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_11.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_12.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_13.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_1.n_2299.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_1.n_2299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_2.n_1254.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_2.n_1254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_3.n_325.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_3.n_325.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_4.n_268.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_4.n_268.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_5.n_263.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_5.n_263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_6.n_194.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_6.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_7.n_154.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_7.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_8.n_104.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_8.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_9.n_90.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_9.n_90.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_10.n_120.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_10.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_11.n_104.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_11.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_12.n_78.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_12.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_13.n_64.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_13.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_14.n_57.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_14.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_15.n_33.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_15.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_16.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_1.n_1591.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_1.n_1591.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_2.n_1298.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_2.n_1298.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_3.n_946.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_3.n_946.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_4.n_857.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_4.n_857.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_5.n_311.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_5.n_311.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_6.n_255.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_6.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_7.n_228.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_7.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_8.n_200.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_8.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_9.n_127.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_9.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_0.n_1224.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_0.n_1224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_10.n_112.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_10.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_11.n_104.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_11.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_12.n_103.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_12.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_13.n_98.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_13.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_14.n_84.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_14.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_15.n_82.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_15.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_16.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_17.n_48.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_17.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_18.n_22.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_18.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_1.n_332.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_1.n_332.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_2.n_284.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_2.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_3.n_263.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_3.n_263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_4.n_262.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_4.n_262.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_6.n_164.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_6.n_164.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_25.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_2.n_1025.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_2.n_1025.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_3.n_452.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_3.n_452.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_4.n_392.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_4.n_392.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_5.n_366.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_5.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_6.n_355.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_6.n_355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_7.n_354.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_7.n_354.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_8.n_341.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_8.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_9.n_273.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_9.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_0.n_2888.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_0.n_2888.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_10.n_141.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_10.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_11.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_12.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_1.n_1066.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_1.n_1066.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_2.n_1052.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_2.n_1052.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_3.n_489.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_3.n_489.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_4.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_6.n_234.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_6.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_7.n_168.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_7.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_8.n_164.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_8.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_9.n_145.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_9.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_0.n_1248.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_0.n_1248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_10.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_11.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_12.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_13.n_26.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_13.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_1.n_1210.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_1.n_1210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_2.n_867.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_2.n_867.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_3.n_867.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_3.n_867.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_4.n_331.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_4.n_331.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_5.n_317.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_5.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_6.n_317.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_6.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_7.n_212.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_7.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_8.n_195.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_8.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_9.n_182.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_9.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_0.n_991.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_0.n_991.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_10.n_200.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_10.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_11.n_182.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_11.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_12.n_166.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_12.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_13.n_148.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_13.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_14.n_143.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_14.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_15.n_114.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_15.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_16.n_107.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_16.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_17.n_104.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_17.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_18.n_81.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_18.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_19.n_59.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_19.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_1.n_900.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_1.n_900.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_2.n_458.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_2.n_458.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_3.n_452.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_3.n_452.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_4.n_304.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_4.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_5.n_249.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_5.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_6.n_217.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_6.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_7.n_214.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_7.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_8.n_209.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_8.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_9.n_207.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_9.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_0.n_885.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_0.n_885.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_10.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_11.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_1.n_162.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_1.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_2.n_125.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_2.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_3.n_124.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_3.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_4.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_5.n_93.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_5.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_6.n_81.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_6.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_7.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_8.n_76.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_8.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_9.n_40.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_9.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_0.n_230.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_0.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_1.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_2.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_3.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_4.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_5.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_7.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_10.n_92.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_10.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_12.n_49.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_12.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_13.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_14.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_1.n_1711.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_1.n_1711.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_2.n_1486.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_2.n_1486.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_3.n_985.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_3.n_985.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_4.n_587.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_4.n_587.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_5.n_488.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_5.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_6.n_428.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_6.n_428.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_7.n_409.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_7.n_409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_8.n_287.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_8.n_287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_9.n_255.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_9.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_10.n_92.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_10.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_12.n_49.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_12.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_13.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_14.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_1.n_1711.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_1.n_1711.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_2.n_1486.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_2.n_1486.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_3.n_985.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_3.n_985.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_4.n_587.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_4.n_587.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_5.n_488.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_5.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_6.n_428.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_6.n_428.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_7.n_409.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_7.n_409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_8.n_287.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_8.n_287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_9.n_255.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_9.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_0.n_9044.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_0.n_9044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_10.n_245.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_10.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_11.n_207.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_11.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_12.n_160.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_12.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_13.n_122.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_13.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_14.n_90.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_14.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_15.n_52.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_15.n_52.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_17.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_1.n_4850.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_1.n_4850.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_2.n_4239.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_2.n_4239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_3.n_2634.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_3.n_2634.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_4.n_1384.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_4.n_1384.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_5.n_1221.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_5.n_1221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_6.n_851.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_6.n_851.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_7.n_792.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_7.n_792.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_8.n_530.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_8.n_530.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_9.n_464.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_9.n_464.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_0.n_405.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_0.n_405.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_10.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_11.n_27.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_11.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_12.n_24.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_12.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_1.n_213.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_1.n_213.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_3.n_63.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_3.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_4.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_5.n_37.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_8.n_310.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_8.n_310.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_9.n_101.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_9.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_0.n_9743.PWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_0.n_9743.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_1.n_9196.PWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_1.n_9196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_2.n_3052.PWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_2.n_3052.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_3.n_198.PWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_3.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_4.n_140.PWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_4.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_5.n_132.PWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_5.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_6.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_7.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_0.n_2250.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_0.n_2250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_10.n_90.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_10.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_11.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_12.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_13.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_13.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_14.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_15.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_1.n_2155.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_1.n_2155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_2.n_1589.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_2.n_1589.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_3.n_1332.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_3.n_1332.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_4.n_766.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_4.n_766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_5.n_724.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_5.n_724.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_6.n_337.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_6.n_337.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_7.n_281.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_7.n_281.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_10.n_492.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_10.n_492.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_14.n_377.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_14.n_377.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_6.n_569.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_6.n_569.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_7.n_525.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_7.n_525.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_4.n_124.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_4.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_5.n_63.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_5.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_6.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_0.n_1284.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_0.n_1284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_10.n_92.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_10.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_11.n_89.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_11.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_12.n_57.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_12.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_13.n_46.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_13.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_1.n_1136.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_1.n_1136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_2.n_1135.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_2.n_1135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_3.n_1112.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_3.n_1112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_4.n_528.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_4.n_528.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_5.n_412.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_5.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_6.n_374.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_6.n_374.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_7.n_288.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_7.n_288.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_8.n_249.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_8.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_0.n_188.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_0.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_10.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_1.n_104.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_1.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_2.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_3.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_4.n_53.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_4.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_5.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_6.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_8.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_9.n_27.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_11.n_96.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_11.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_12.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_13.n_71.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_13.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_14.n_57.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_14.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_1.n_277.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_1.n_277.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_2.n_276.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_2.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_3.n_256.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_3.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_4.n_194.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_4.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_5.n_182.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_5.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_6.n_174.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_6.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_7.n_127.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_7.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_8.n_125.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_8.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_9.n_121.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_9.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_0.n_883.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_0.n_883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_10.n_39.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_10.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_1.n_679.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_1.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_2.n_323.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_2.n_323.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_3.n_86.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_3.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_4.n_75.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_4.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_5.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_6.n_60.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_6.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_7.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_8.n_44.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_8.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_9.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_0.n_10989.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_0.n_10989.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_10.n_172.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_10.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_11.n_131.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_11.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_12.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_13.n_107.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_13.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_14.n_101.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_14.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_15.n_99.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_15.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_16.n_86.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_16.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_17.n_86.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_17.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_18.n_46.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_18.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_19.n_39.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_19.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_1.n_2669.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_1.n_2669.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_20.n_35.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_20.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_21.n_33.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_21.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_22.n_27.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_22.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_23.n_24.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_23.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_24.n_24.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_24.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_2.n_2542.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_2.n_2542.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_3.n_1121.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_3.n_1121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_4.n_861.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_4.n_861.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_5.n_413.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_5.n_413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_6.n_386.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_6.n_386.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_7.n_369.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_7.n_369.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_8.n_244.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_8.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_9.n_185.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_9.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_0.n_609.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_0.n_609.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_10.n_70.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_10.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_11.n_66.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_11.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_12.n_58.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_12.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_13.n_57.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_13.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_14.n_57.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_14.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_15.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_16.n_39.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_16.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_17.n_34.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_17.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_18.n_26.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_18.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_1.n_216.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_1.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_2.n_150.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_2.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_3.n_147.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_3.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_4.n_147.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_4.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_5.n_112.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_5.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_6.n_108.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_6.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_7.n_91.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_7.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_8.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_9.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_0.n_2040.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_0.n_2040.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_10.n_340.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_10.n_340.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_11.n_265.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_11.n_265.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_12.n_247.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_12.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_13.n_227.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_13.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_14.n_191.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_14.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_15.n_179.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_15.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_16.n_171.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_16.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_17.n_124.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_17.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_18.n_83.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_18.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_19.n_81.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_19.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_1.n_1908.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_1.n_1908.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_20.n_24.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_20.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_21.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_22.n_20.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_22.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_2.n_1656.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_2.n_1656.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_3.n_1504.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_3.n_1504.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_4.n_1443.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_4.n_1443.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_5.n_749.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_5.n_749.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_6.n_608.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_6.n_608.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_7.n_521.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_7.n_521.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_8.n_519.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_8.n_519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_9.n_398.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_9.n_398.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_0.n_12655.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_0.n_12655.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_1.n_372.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_1.n_372.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_2.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_0.n_1181.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_0.n_1181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_10.n_83.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_10.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_11.n_81.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_11.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_12.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_13.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_14.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_15.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_1.n_1115.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_1.n_1115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_2.n_431.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_2.n_431.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_3.n_309.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_3.n_309.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_4.n_228.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_4.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_5.n_194.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_5.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_6.n_183.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_6.n_183.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_8.n_144.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_8.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_9.n_124.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_9.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_0.n_1849.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_0.n_1849.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_1.n_313.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_1.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_2.n_212.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_2.n_212.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_5.n_137.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_5.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_0.n_4274.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_0.n_4274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_1.n_1004.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_1.n_1004.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_2.n_729.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_2.n_729.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_3.n_600.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_3.n_600.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_0.n_2543.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_0.n_2543.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_1.n_301.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_1.n_301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_2.n_275.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_2.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_3.n_238.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_3.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_4.n_229.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_4.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_5.n_213.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_5.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_6.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_7.n_72.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_7.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_8.n_54.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_8.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_9.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_10.n_99.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_10.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_11.n_97.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_11.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_12.n_86.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_12.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_13.n_84.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_13.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_14.n_78.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_14.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_15.n_67.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_15.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_16.n_63.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_16.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_17.n_60.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_17.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_18.n_52.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_18.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_19.n_45.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_19.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_1.n_327.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_1.n_327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_20.n_44.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_20.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_21.n_34.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_21.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_22.n_31.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_22.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_24.n_29.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_24.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_2.n_292.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_2.n_292.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_3.n_227.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_3.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_4.n_174.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_4.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_5.n_124.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_5.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_6.n_123.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_6.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_7.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_8.n_101.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_8.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_9.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_10.n_99.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_10.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_11.n_97.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_11.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_12.n_86.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_12.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_13.n_84.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_13.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_14.n_78.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_14.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_15.n_67.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_15.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_16.n_63.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_16.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_17.n_60.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_17.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_18.n_52.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_18.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_19.n_45.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_19.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_1.n_327.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_1.n_327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_20.n_44.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_20.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_21.n_34.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_21.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_22.n_31.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_22.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_24.n_29.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_24.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_2.n_292.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_2.n_292.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_3.n_227.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_3.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_4.n_174.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_4.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_5.n_124.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_5.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_6.n_123.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_6.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_7.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_8.n_101.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_8.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_9.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_0.n_3884.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_0.n_3884.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_10.n_141.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_10.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_11.n_124.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_11.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_12.n_92.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_12.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_13.n_90.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_13.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_14.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_15.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_1.n_532.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_1.n_532.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_2.n_315.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_2.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_3.n_265.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_3.n_265.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_4.n_233.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_4.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_5.n_227.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_5.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_6.n_212.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_6.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_7.n_179.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_7.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_8.n_167.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_8.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_9.n_158.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_9.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_0.n_3068.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_0.n_3068.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_10.n_243.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_10.n_243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_11.n_237.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_11.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_12.n_154.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_12.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_13.n_60.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_13.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_1.n_1796.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_1.n_1796.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_2.n_1485.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_2.n_1485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_3.n_1169.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_3.n_1169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_4.n_1149.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_4.n_1149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_5.n_904.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_5.n_904.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_6.n_756.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_6.n_756.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_7.n_405.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_7.n_405.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_8.n_336.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_8.n_336.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_0.n_3282.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_0.n_3282.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_10.n_102.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_10.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_11.n_93.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_11.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_12.n_80.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_12.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_13.n_79.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_13.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_14.n_69.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_14.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_15.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_16.n_58.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_16.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_17.n_56.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_17.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_18.n_54.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_18.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_19.n_50.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_19.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_1.n_2357.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_1.n_2357.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_20.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_21.n_31.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_21.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_22.n_29.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_22.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_23.n_24.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_23.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_2.n_798.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_2.n_798.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_3.n_384.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_3.n_384.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_4.n_212.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_4.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_5.n_141.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_5.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_6.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_7.n_116.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_7.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_8.n_105.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_8.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_9.n_104.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_9.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_0.n_629.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_0.n_629.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_11.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_12.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_13.n_24.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_7.n_108.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_7.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_8.n_102.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_8.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_9.n_92.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_9.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_0.n_1004.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_0.n_1004.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_1.n_538.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_1.n_538.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_2.n_191.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_2.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_3.n_182.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_3.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_4.n_168.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_4.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_5.n_154.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_5.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_6.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_7.n_130.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_7.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_8.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_9.n_54.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_9.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_0.n_376.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_0.n_376.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_10.n_67.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_10.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_11.n_66.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_11.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_12.n_65.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_12.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_13.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_14.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_15.n_34.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_15.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_16.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_1.n_154.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_1.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_2.n_141.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_2.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_3.n_141.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_3.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_4.n_124.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_4.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_5.n_112.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_5.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_6.n_95.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_6.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_7.n_95.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_7.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_8.n_73.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_8.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_9.n_67.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_9.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HEK526-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HEK526-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_0.n_1908.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_0.n_1908.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_10.n_256.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_10.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_11.n_247.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_11.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_12.n_240.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_12.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_13.n_188.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_13.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_14.n_177.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_14.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_15.n_149.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_15.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_16.n_137.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_16.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_17.n_130.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_17.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_18.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_19.n_45.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_19.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_1.n_975.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_1.n_975.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_20.n_34.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_20.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_21.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_2.n_634.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_2.n_634.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_3.n_446.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_3.n_446.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_4.n_428.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_4.n_428.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_5.n_368.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_5.n_368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_6.n_359.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_6.n_359.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_7.n_353.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_7.n_353.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_8.n_338.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_8.n_338.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_9.n_309.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_9.n_309.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_0.n_2170.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_0.n_2170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_10.n_190.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_10.n_190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_11.n_104.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_11.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_12.n_73.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_12.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_13.n_69.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_13.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_14.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_15.n_64.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_15.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_16.n_59.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_16.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_17.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_18.n_36.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_18.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_19.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_1.n_2101.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_1.n_2101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_20.n_34.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_20.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_21.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_22.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_2.n_1219.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_2.n_1219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_3.n_773.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_3.n_773.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_4.n_769.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_4.n_769.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_5.n_625.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_5.n_625.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_6.n_412.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_6.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_7.n_384.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_7.n_384.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_8.n_371.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_8.n_371.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_9.n_330.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_9.n_330.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_0.n_2170.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_0.n_2170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_10.n_190.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_10.n_190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_11.n_104.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_11.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_12.n_73.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_12.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_13.n_69.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_13.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_14.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_15.n_64.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_15.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_16.n_59.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_16.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_17.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_18.n_36.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_18.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_19.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_1.n_2101.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_1.n_2101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_20.n_34.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_20.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_21.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_22.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_2.n_1219.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_2.n_1219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_3.n_773.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_3.n_773.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_4.n_769.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_4.n_769.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_5.n_625.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_5.n_625.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_6.n_412.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_6.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_7.n_384.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_7.n_384.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_8.n_371.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_8.n_371.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_9.n_330.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_9.n_330.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_0.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_10.n_56.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_10.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_11.n_52.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_11.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_12.n_52.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_12.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_13.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_14.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_15.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_16.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_1.n_163.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_1.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_2.n_117.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_2.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_3.n_112.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_3.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_4.n_104.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_4.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_5.n_98.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_5.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_6.n_97.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_6.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_7.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_8.n_79.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_8.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_9.n_59.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_9.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_0.n_2508.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_0.n_2508.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_10.n_117.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_10.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_11.n_116.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_11.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_12.n_101.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_12.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_13.n_76.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_13.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_14.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_15.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_1.n_2112.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_1.n_2112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_2.n_1511.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_2.n_1511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_3.n_1429.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_3.n_1429.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_4.n_571.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_4.n_571.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_5.n_507.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_5.n_507.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_6.n_366.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_6.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_7.n_247.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_7.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_8.n_162.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_8.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_9.n_155.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_9.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_0.n_224.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_0.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_10.n_67.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_10.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_11.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_12.n_62.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_12.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_13.n_56.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_13.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_14.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_15.n_36.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_15.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_16.n_31.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_16.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_17.n_31.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_17.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_18.n_28.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_18.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_19.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_1.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_20.n_25.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_20.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_21.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_22.n_20.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_22.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_2.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_3.n_100.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_3.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_4.n_95.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_4.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_5.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_6.n_75.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_6.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_7.n_74.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_7.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_8.n_72.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_8.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_9.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_0.n_2825.PWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_0.n_2825.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_1.n_334.PWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_1.n_334.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_2.n_106.PWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_2.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_3.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_0.n_2616.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_0.n_2616.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_10.n_60.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_10.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_11.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_12.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_13.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_1.n_224.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_1.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_2.n_189.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_2.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_3.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_4.n_167.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_4.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_5.n_125.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_5.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_6.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_7.n_94.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_7.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_8.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_9.n_70.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_9.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_0.n_590.PWM.meme motif-alignments-all-vs-all/ZNF214/ZNF214-201-vs-ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_0.n_590.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_1.n_271.PWM.meme motif-alignments-all-vs-all/ZNF214/ZNF214-201-vs-ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_1.n_271.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_2.n_258.PWM.meme motif-alignments-all-vs-all/ZNF214/ZNF214-201-vs-ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_2.n_258.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_0.n_4115.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_0.n_4115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_10.n_174.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_10.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_11.n_171.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_11.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_12.n_167.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_12.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_13.n_156.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_13.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_14.n_152.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_14.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_15.n_92.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_15.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_16.n_81.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_16.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_17.n_77.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_17.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_18.n_69.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_18.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_19.n_67.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_19.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_1.n_2167.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_1.n_2167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_20.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_21.n_49.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_21.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_22.n_42.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_22.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_23.n_42.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_23.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_24.n_37.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_24.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_25.n_33.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_25.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_26.n_31.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_26.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_27.n_31.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_27.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_28.n_28.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_28.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_29.n_27.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_29.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_2.n_2125.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_2.n_2125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_3.n_1648.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_3.n_1648.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_4.n_1388.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_4.n_1388.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_5.n_1022.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_5.n_1022.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_6.n_1011.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_6.n_1011.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_7.n_563.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_7.n_563.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_8.n_351.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_8.n_351.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_9.n_265.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_9.n_265.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_0.n_8301.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_0.n_8301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_10.n_408.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_10.n_408.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_11.n_388.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_11.n_388.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_12.n_382.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_12.n_382.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_13.n_299.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_13.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_14.n_282.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_14.n_282.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_15.n_212.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_15.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_16.n_196.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_16.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_17.n_158.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_17.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_18.n_134.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_18.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_19.n_115.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_19.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_1.n_3255.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_1.n_3255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_20.n_97.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_20.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_21.n_38.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_21.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_22.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_23.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_24.n_24.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_24.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_2.n_2573.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_2.n_2573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_3.n_1857.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_3.n_1857.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_4.n_1747.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_4.n_1747.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_5.n_1643.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_5.n_1643.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_6.n_1040.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_6.n_1040.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_7.n_978.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_7.n_978.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_8.n_716.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_8.n_716.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_9.n_686.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_9.n_686.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_0.n_118.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_0.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_10.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_1.n_36.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_1.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_3.n_29.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_3.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_5.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_6.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_7.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_8.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_0.n_3894.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_0.n_3894.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_10.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_11.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_12.n_38.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_12.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_13.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_14.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_15.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_1.n_1947.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_1.n_1947.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_2.n_1897.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_2.n_1897.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_3.n_1449.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_3.n_1449.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_4.n_1072.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_4.n_1072.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_5.n_1034.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_5.n_1034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_6.n_838.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_6.n_838.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_7.n_611.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_7.n_611.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_8.n_394.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_8.n_394.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_9.n_273.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_9.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_0.n_5455.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_0.n_5455.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_10.n_499.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_10.n_499.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_11.n_474.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_11.n_474.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_12.n_386.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_12.n_386.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_13.n_372.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_13.n_372.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_14.n_367.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_14.n_367.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_15.n_339.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_15.n_339.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_16.n_328.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_16.n_328.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_17.n_252.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_17.n_252.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_18.n_249.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_18.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_19.n_235.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_19.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_1.n_4007.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_1.n_4007.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_20.n_171.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_20.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_21.n_116.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_21.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_22.n_45.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_22.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_23.n_43.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_23.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_2.n_1979.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_2.n_1979.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_3.n_1801.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_3.n_1801.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_4.n_1755.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_4.n_1755.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_5.n_1592.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_5.n_1592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_6.n_1078.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_6.n_1078.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_7.n_836.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_7.n_836.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_8.n_775.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_8.n_775.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_9.n_718.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_9.n_718.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_0.n_1278.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_0.n_1278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_1.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_3.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_4.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_0.n_7781.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_0.n_7781.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_10.n_173.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_10.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_11.n_140.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_11.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_12.n_132.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_12.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_13.n_102.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_13.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_14.n_81.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_14.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_15.n_71.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_15.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_16.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_17.n_34.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_17.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_1.n_3489.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_1.n_3489.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_2.n_3119.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_2.n_3119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_3.n_2940.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_3.n_2940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_4.n_2442.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_4.n_2442.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_5.n_1828.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_5.n_1828.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_6.n_931.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_6.n_931.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_7.n_596.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_7.n_596.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_8.n_296.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_8.n_296.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_9.n_274.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_9.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_0.n_7781.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_0.n_7781.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_10.n_173.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_10.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_11.n_140.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_11.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_12.n_132.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_12.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_13.n_102.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_13.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_14.n_81.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_14.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_15.n_71.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_15.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_16.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_17.n_34.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_17.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_1.n_3489.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_1.n_3489.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_2.n_3119.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_2.n_3119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_3.n_2940.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_3.n_2940.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_4.n_2442.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_4.n_2442.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_5.n_1828.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_5.n_1828.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_6.n_931.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_6.n_931.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_7.n_596.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_7.n_596.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_8.n_296.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_8.n_296.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_9.n_274.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_9.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_0.n_1021.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_0.n_1021.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_1.n_121.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_1.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_2.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_3.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_4.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_5.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_6.n_56.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_6.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_7.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_8.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_9.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_0.n_515.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_0.n_515.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_1.n_333.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_1.n_333.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_2.n_272.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_2.n_272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_3.n_194.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_3.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_4.n_180.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_4.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_5.n_156.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_5.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_6.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_7.n_80.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_7.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_8.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_0.n_98.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_0.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_10.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_11.n_67.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_11.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_12.n_65.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_12.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_13.n_59.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_13.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_14.n_57.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_14.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_15.n_56.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_15.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_16.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_17.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_18.n_53.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_18.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_19.n_52.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_19.n_52.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_22.n_158.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_22.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_23.n_152.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_23.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_24.n_122.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_24.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_25.n_50.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_25.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_26.n_37.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_26.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_27.n_35.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_27.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_28.n_31.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_28.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_29.n_24.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_29.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_2.n_4018.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_2.n_4018.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_30.n_21.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_30.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_3.n_3142.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_3.n_3142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_4.n_2864.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_4.n_2864.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_5.n_2623.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_5.n_2623.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_6.n_2125.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_6.n_2125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_7.n_2024.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_7.n_2024.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_8.n_1203.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_8.n_1203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_9.n_1084.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_9.n_1084.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_0.n_1777.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_0.n_1777.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_10.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_1.n_1514.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_1.n_1514.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_2.n_1498.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_2.n_1498.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_3.n_636.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_3.n_636.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_4.n_293.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_4.n_293.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_5.n_284.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_5.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_6.n_257.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_6.n_257.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_7.n_254.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_7.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_8.n_73.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_8.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_9.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_9.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585B-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_0.n_5269.PWM.meme motif-alignments-all-vs-all/ZNF585B/ZNF585B-205-vs-ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_0.n_5269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585B-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_1.n_1141.PWM.meme motif-alignments-all-vs-all/ZNF585B/ZNF585B-205-vs-ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_1.n_1141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585B-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all/ZNF585B/ZNF585B-205-vs-ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_2.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_0.n_229.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_0.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_1.n_189.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_1.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_2.n_177.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_2.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_3.n_164.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_3.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_4.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_5.n_68.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_5.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_6.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_7.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_0.n_620.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_0.n_620.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_10.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_11.n_84.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_11.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_12.n_83.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_12.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_13.n_75.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_13.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_14.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_15.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_16.n_31.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_16.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_17.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_18.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_1.n_303.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_1.n_303.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_2.n_136.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_2.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_3.n_121.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_3.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_4.n_115.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_4.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_5.n_112.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_5.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_6.n_111.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_6.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_8.n_105.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_8.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_9.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_0.n_4281.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_0.n_4281.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_1.n_2044.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_1.n_2044.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_2.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_3.n_643.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_3.n_643.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_4.n_133.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_4.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_5.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_6.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_7.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_8.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_0.n_2425.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_0.n_2425.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_10.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_10.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_11.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_11.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_12.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_12.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_13.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_14.n_33.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_14.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_15.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_16.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_16.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_1.n_1374.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_1.n_1374.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_2.n_1271.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_2.n_1271.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_3.n_846.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_3.n_846.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_4.n_429.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_4.n_429.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_5.n_178.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_5.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_6.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_7.n_126.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_7.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_8.n_122.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_8.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_9.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_0.n_7514.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_0.n_7514.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_10.n_189.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_10.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_11.n_178.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_11.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_12.n_169.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_12.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_13.n_158.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_13.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_14.n_158.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_14.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_15.n_139.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_15.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_16.n_67.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_16.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_17.n_62.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_17.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_18.n_32.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_18.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_19.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_1.n_3375.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_1.n_3375.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_2.n_2165.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_2.n_2165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_3.n_1425.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_3.n_1425.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_4.n_1240.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_4.n_1240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_5.n_922.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_5.n_922.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_6.n_507.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_6.n_507.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_7.n_376.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_7.n_376.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_8.n_238.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_8.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_9.n_219.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_9.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_0.n_9396.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_0.n_9396.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_10.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_11.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_12.n_60.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_12.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_13.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_14.n_53.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_14.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_15.n_51.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_15.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_16.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_17.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_18.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_1.n_7071.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_1.n_7071.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_20.n_30.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_20.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_21.n_29.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_21.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_22.n_29.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_22.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_23.n_27.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_23.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_24.n_22.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_24.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_25.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_2.n_2454.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_2.n_2454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_3.n_1390.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_3.n_1390.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_4.n_1142.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_4.n_1142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_5.n_397.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_5.n_397.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_6.n_388.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_6.n_388.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_7.n_200.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_7.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_8.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_9.n_96.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_9.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_0.n_1810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_1.n_698.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_1.n_698.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_2.n_399.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_2.n_399.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_3.n_389.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_3.n_389.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_4.n_378.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_4.n_378.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_5.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_6.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_7.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_8.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_9.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_0.n_3667.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_0.n_3667.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_10.n_378.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_10.n_378.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_11.n_362.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_11.n_362.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_12.n_332.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_12.n_332.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_13.n_312.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_13.n_312.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_14.n_255.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_14.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_15.n_242.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_15.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_16.n_210.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_16.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_17.n_183.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_17.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_18.n_139.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_18.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_19.n_102.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_19.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_1.n_3546.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_1.n_3546.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_20.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_21.n_40.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_21.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_22.n_25.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_22.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_23.n_20.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_23.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_2.n_3426.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_2.n_3426.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_3.n_1769.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_3.n_1769.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_4.n_1289.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_4.n_1289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_5.n_824.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_5.n_824.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_6.n_803.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_6.n_803.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_7.n_734.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_7.n_734.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_8.n_622.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_8.n_622.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_9.n_497.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_9.n_497.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_0.n_1615.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_0.n_1615.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_10.n_86.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_10.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_11.n_66.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_11.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_12.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_1.n_1129.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_1.n_1129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_2.n_455.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_2.n_455.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_3.n_349.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_3.n_349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_4.n_329.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_4.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_5.n_312.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_5.n_312.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_6.n_284.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_6.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_7.n_269.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_7.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_8.n_264.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_8.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_9.n_161.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_9.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_17.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_1.n_1470.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_1.n_1470.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_2.n_1101.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_2.n_1101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_3.n_666.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_3.n_666.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_4.n_480.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_4.n_480.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_5.n_380.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_5.n_380.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_6.n_356.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_6.n_356.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_7.n_338.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_7.n_338.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_8.n_328.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_8.n_328.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_9.n_179.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_9.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_0.n_1618.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_0.n_1618.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_10.n_198.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_10.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_11.n_190.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_11.n_190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_12.n_132.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_12.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_13.n_114.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_13.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_14.n_102.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_14.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_15.n_91.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_15.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_16.n_66.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_16.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_17.n_33.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_17.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_18.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_1.n_1370.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_1.n_1370.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_2.n_1016.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_2.n_1016.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_3.n_727.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_3.n_727.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_4.n_399.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_4.n_399.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_5.n_399.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_5.n_399.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_6.n_297.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_6.n_297.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_7.n_247.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_7.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_8.n_242.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_8.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_9.n_201.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_9.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_0.n_8412.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_0.n_8412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_10.n_235.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_10.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_11.n_104.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_11.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_12.n_77.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_12.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_1.n_5833.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_1.n_5833.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_2.n_4596.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_2.n_4596.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_3.n_2223.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_3.n_2223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_4.n_784.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_4.n_784.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_5.n_757.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_5.n_757.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_6.n_546.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_6.n_546.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_7.n_466.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_7.n_466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_8.n_351.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_8.n_351.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_9.n_315.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_9.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_0.n_15291.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_0.n_15291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_10.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_11.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_12.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_1.n_2944.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_1.n_2944.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_2.n_1738.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_2.n_1738.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_3.n_703.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_3.n_703.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_4.n_505.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_4.n_505.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_5.n_341.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_5.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_6.n_305.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_6.n_305.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_7.n_161.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_7.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_8.n_156.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_8.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_9.n_114.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_9.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_0.n_2890.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_0.n_2890.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_10.n_160.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_10.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_11.n_28.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_11.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_1.n_1233.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_1.n_1233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_2.n_254.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_2.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_3.n_253.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_3.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_4.n_238.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_4.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_5.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_6.n_196.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_6.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_7.n_182.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_7.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_8.n_174.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_8.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_9.n_171.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_9.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_0.n_3154.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_0.n_3154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_1.n_1083.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_1.n_1083.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_2.n_936.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_2.n_936.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_3.n_249.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_3.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_4.n_183.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_4.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_5.n_141.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_5.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_6.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_7.n_124.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_7.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_8.n_90.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_8.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_9.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_0.n_2115.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_0.n_2115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_10.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_11.n_59.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_11.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_12.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_13.n_57.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_13.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_14.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_1.n_334.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_1.n_334.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_2.n_244.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_2.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_3.n_234.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_3.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_4.n_195.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_4.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_5.n_184.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_5.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_6.n_130.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_6.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_7.n_129.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_7.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_8.n_92.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_8.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_9.n_82.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_9.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_0.n_3156.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_0.n_3156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_1.n_208.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_1.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_2.n_149.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_2.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_3.n_141.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_3.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_4.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_5.n_91.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_5.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_6.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_7.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_0.n_972.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_0.n_972.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_10.n_84.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_10.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_11.n_62.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_11.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_12.n_57.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_12.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_13.n_50.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_13.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_14.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_15.n_36.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_15.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_16.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_1.n_554.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_1.n_554.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_2.n_346.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_2.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_3.n_322.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_3.n_322.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_4.n_236.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_4.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_5.n_168.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_5.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_6.n_148.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_6.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_7.n_143.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_7.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_8.n_124.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_8.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_9.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_0.n_310.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_0.n_310.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_1.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_2.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_3.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_4.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_5.n_33.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_5.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_6.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_7.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_0.n_319.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_0.n_319.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_10.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_11.n_31.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_11.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_12.n_28.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_12.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_13.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_14.n_24.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_14.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_16.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_17.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_18.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_1.n_184.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_1.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_2.n_143.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_2.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_3.n_105.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_3.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_4.n_80.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_4.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_5.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_6.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_7.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_8.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_9.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_0.n_276.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_0.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_1.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_2.n_81.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_2.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_3.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_4.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_5.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_6.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_7.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_0.n_1270.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_0.n_1270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_10.n_244.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_10.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_11.n_237.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_11.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_12.n_171.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_12.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_13.n_163.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_13.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_14.n_140.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_14.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_15.n_121.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_15.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_16.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_17.n_111.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_17.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_18.n_102.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_18.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_19.n_96.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_19.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_1.n_550.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_1.n_550.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_20.n_95.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_20.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_21.n_85.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_21.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_22.n_68.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_22.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_23.n_58.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_23.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_24.n_54.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_24.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_25.n_48.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_25.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_26.n_31.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_26.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_2.n_545.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_2.n_545.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_3.n_436.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_3.n_436.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_4.n_414.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_4.n_414.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_5.n_399.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_5.n_399.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_6.n_378.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_6.n_378.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_7.n_319.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_7.n_319.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_8.n_282.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_8.n_282.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_9.n_280.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_9.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_0.n_6133.PWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_0.n_6133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_1.n_5926.PWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_1.n_5926.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_2.n_246.PWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_2.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_3.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_4.n_94.PWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_4.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_5.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_6.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_0.n_133.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_0.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_1.n_126.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_1.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_2.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_3.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_4.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_5.n_50.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_5.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_6.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_7.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_8.n_40.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_8.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_9.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_0.n_6522.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_0.n_6522.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_1.n_4915.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_1.n_4915.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_2.n_2085.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_2.n_2085.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_3.n_1244.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_3.n_1244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_4.n_272.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_4.n_272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_5.n_172.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_5.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_6.n_171.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_6.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_7.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_8.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_9.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_0.n_953.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_0.n_953.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_10.n_71.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_10.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_11.n_67.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_11.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_12.n_65.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_12.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_13.n_63.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_13.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_14.n_58.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_14.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_15.n_53.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_15.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_16.n_51.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_16.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_17.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_18.n_24.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_18.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_19.n_20.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_19.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_1.n_392.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_1.n_392.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_2.n_158.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_2.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_3.n_121.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_3.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_4.n_117.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_4.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_5.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_6.n_96.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_6.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_7.n_87.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_7.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_8.n_86.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_8.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_9.n_71.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_9.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_1.n_169.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_1.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_2.n_101.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_2.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_3.n_85.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_3.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_4.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_1.n_169.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_1.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_2.n_101.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_2.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_3.n_85.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_3.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_4.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_0.n_1595.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_0.n_1595.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_10.n_164.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_10.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_11.n_162.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_11.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_12.n_143.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_12.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_13.n_127.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_13.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_14.n_97.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_14.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_15.n_87.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_15.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_16.n_85.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_16.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_17.n_75.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_17.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_18.n_71.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_18.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_19.n_60.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_19.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_1.n_1084.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_1.n_1084.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_20.n_34.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_20.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_21.n_28.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_21.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_2.n_647.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_2.n_647.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_3.n_380.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_3.n_380.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_4.n_233.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_4.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_5.n_224.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_5.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_6.n_205.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_6.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_7.n_188.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_7.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_8.n_169.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_8.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_9.n_167.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_9.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_0.n_1103.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_0.n_1103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_10.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_1.n_989.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_1.n_989.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_2.n_875.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_2.n_875.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_3.n_861.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_3.n_861.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_4.n_304.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_4.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_5.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_6.n_150.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_6.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_8.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_0.n_1165.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_0.n_1165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_10.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_11.n_61.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_11.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_12.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_13.n_57.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_13.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_14.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_15.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_16.n_43.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_16.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_17.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_18.n_28.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_18.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_19.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_1.n_606.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_1.n_606.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_20.n_26.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_20.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_2.n_590.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_2.n_590.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_3.n_214.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_3.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_4.n_205.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_4.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_5.n_203.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_5.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_6.n_194.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_6.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_7.n_179.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_7.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_8.n_118.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_8.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_9.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_0.n_2464.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_0.n_2464.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_10.n_289.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_10.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_11.n_277.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_11.n_277.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_12.n_262.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_12.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_13.n_162.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_13.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_14.n_132.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_14.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_15.n_110.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_15.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_16.n_99.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_16.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_17.n_80.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_17.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_18.n_75.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_18.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_19.n_63.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_19.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_1.n_1625.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_1.n_1625.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_20.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_2.n_1428.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_2.n_1428.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_3.n_1382.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_3.n_1382.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_4.n_806.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_4.n_806.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_5.n_607.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_5.n_607.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_6.n_513.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_6.n_513.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_8.n_423.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_8.n_423.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_9.n_303.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_9.n_303.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_0.n_213.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_0.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_10.n_68.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_10.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_11.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_1.n_183.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_1.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_2.n_167.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_2.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_3.n_149.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_3.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_4.n_146.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_4.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_5.n_132.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_5.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_6.n_125.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_6.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_7.n_85.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_7.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_8.n_79.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_8.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_9.n_71.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_9.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_0.n_1203.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_0.n_1203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_10.n_50.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_10.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_11.n_46.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_11.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_1.n_1193.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_1.n_1193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_2.n_910.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_2.n_910.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_3.n_479.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_3.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_4.n_303.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_4.n_303.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_5.n_233.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_5.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_6.n_218.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_6.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_7.n_170.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_7.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_8.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_9.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_0.n_1250.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_0.n_1250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_1.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_0.n_611.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_0.n_611.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_10.n_217.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_10.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_11.n_215.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_11.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_12.n_210.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_12.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_13.n_173.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_13.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_14.n_150.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_14.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_15.n_142.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_15.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_16.n_124.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_16.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_17.n_121.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_17.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_18.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_19.n_75.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_19.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_1.n_388.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_1.n_388.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_20.n_73.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_20.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_21.n_60.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_21.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_22.n_52.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_22.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_23.n_48.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_23.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_2.n_387.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_2.n_387.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_3.n_381.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_3.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_4.n_319.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_4.n_319.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_5.n_305.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_5.n_305.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_6.n_275.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_6.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_7.n_267.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_7.n_267.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_8.n_256.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_8.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_9.n_246.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_9.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_0.n_621.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_0.n_621.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_10.n_92.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_10.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_11.n_87.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_11.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_12.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_13.n_83.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_13.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_14.n_73.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_14.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_15.n_64.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_15.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_16.n_61.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_16.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_17.n_59.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_17.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_18.n_55.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_18.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_19.n_45.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_19.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_1.n_407.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_1.n_407.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_20.n_25.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_20.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_21.n_24.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_21.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_22.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_2.n_294.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_2.n_294.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_3.n_206.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_3.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_4.n_172.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_4.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_5.n_135.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_5.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_6.n_122.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_6.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_7.n_107.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_7.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_8.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_9.n_94.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_9.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_0.n_46.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_0.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_1.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_0.n_3012.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_0.n_3012.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_10.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_11.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_12.n_30.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_12.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_13.n_30.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_13.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_1.n_1578.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_1.n_1578.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_2.n_1271.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_2.n_1271.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_3.n_708.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_3.n_708.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_4.n_419.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_4.n_419.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_5.n_182.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_5.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_6.n_173.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_6.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_7.n_135.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_7.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_8.n_129.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_8.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_9.n_94.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_9.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_0.n_475.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_0.n_475.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_11.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_1.n_157.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_1.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_2.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_3.n_107.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_3.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_4.n_72.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_4.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_5.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_6.n_62.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_6.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_7.n_47.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_7.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_8.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_9.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_0.n_1820.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_0.n_1820.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_10.n_47.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_10.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_11.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_12.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_13.n_27.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_13.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_14.n_24.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_14.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_1.n_1732.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_1.n_1732.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_2.n_374.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_2.n_374.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_3.n_338.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_3.n_338.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_4.n_314.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_4.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_5.n_103.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_5.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_6.n_101.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_6.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_7.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_8.n_90.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_8.n_90.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_0.n_270.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_0.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_1.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_2.n_101.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_2.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_3.n_86.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_3.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_4.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_5.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_0.n_2506.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_0.n_2506.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_10.n_97.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_10.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_11.n_97.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_11.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_12.n_83.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_12.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_13.n_82.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_13.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_14.n_71.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_14.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_15.n_60.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_15.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_16.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_17.n_36.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_17.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_18.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_1.n_1573.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_1.n_1573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_2.n_285.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_2.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_3.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_4.n_262.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_4.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_5.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_6.n_176.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_6.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_7.n_142.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_7.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_8.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_9.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_0.n_12336.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_0.n_12336.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_10.n_91.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_10.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_11.n_80.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_11.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_12.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_13.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_14.n_24.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_14.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_15.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_1.n_4754.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_1.n_4754.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_2.n_2079.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_2.n_2079.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_3.n_602.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_3.n_602.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_4.n_516.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_4.n_516.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_5.n_492.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_5.n_492.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_6.n_288.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_6.n_288.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_7.n_214.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_7.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_8.n_151.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_8.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_9.n_101.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_9.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_0.n_14799.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_0.n_14799.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_10.n_143.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_10.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_11.n_139.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_11.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_12.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_13.n_112.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_13.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_14.n_109.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_14.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_15.n_107.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_15.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_16.n_64.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_16.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_17.n_43.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_17.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_18.n_37.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_18.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_19.n_33.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_19.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_1.n_1035.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_1.n_1035.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_20.n_31.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_20.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_21.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_22.n_27.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_22.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_23.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_2.n_748.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_2.n_748.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_3.n_438.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_3.n_438.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_4.n_419.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_4.n_419.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_5.n_260.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_5.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_6.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_7.n_223.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_7.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_8.n_195.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_8.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_9.n_160.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_9.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_0.n_3051.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_0.n_3051.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_10.n_166.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_10.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_11.n_150.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_11.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_12.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_13.n_78.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_13.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_14.n_58.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_14.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_15.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_16.n_41.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_16.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_17.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_1.n_2763.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_1.n_2763.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_2.n_2172.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_2.n_2172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_3.n_1811.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_3.n_1811.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_4.n_939.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_4.n_939.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_5.n_415.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_5.n_415.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_6.n_358.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_6.n_358.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_7.n_310.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_7.n_310.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_8.n_296.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_8.n_296.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_9.n_266.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_9.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_0.n_4509.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_0.n_4509.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_10.n_134.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_10.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_11.n_84.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_11.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_12.n_74.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_12.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_13.n_61.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_13.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_14.n_59.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_14.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_15.n_52.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_15.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_16.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_17.n_34.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_17.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_18.n_31.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_18.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_19.n_31.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_19.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_1.n_1908.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_1.n_1908.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_2.n_640.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_2.n_640.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_3.n_416.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_3.n_416.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_4.n_416.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_4.n_416.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_5.n_284.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_5.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_6.n_220.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_6.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_7.n_215.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_7.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_8.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_9.n_164.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_9.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_0.n_3526.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_0.n_3526.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_10.n_92.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_10.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_11.n_49.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_11.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_12.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_13.n_43.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_13.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_14.n_36.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_14.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_15.n_34.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_15.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_16.n_29.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_16.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_17.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_1.n_1439.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_1.n_1439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_2.n_1100.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_2.n_1100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_3.n_229.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_3.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_4.n_200.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_4.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_5.n_193.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_5.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_6.n_184.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_6.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_7.n_178.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_7.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_8.n_177.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_8.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_9.n_117.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_9.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_0.n_657.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_0.n_657.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_10.n_95.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_10.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_11.n_76.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_11.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_12.n_65.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_12.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_13.n_64.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_13.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_14.n_48.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_14.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_16.n_29.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_16.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_1.n_254.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_1.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_2.n_187.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_2.n_187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_3.n_165.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_3.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_4.n_150.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_4.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_5.n_150.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_5.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_6.n_141.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_6.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_7.n_109.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_7.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_8.n_108.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_8.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_9.n_99.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_9.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_0.n_6347.PWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_0.n_6347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_1.n_251.PWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_1.n_251.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_2.n_167.PWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_2.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_3.n_156.PWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_3.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_4.n_96.PWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_4.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_5.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_6.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_0.n_881.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_0.n_881.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_10.n_134.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_10.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_11.n_132.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_11.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_12.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_13.n_118.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_13.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_14.n_102.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_14.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_15.n_88.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_15.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_16.n_88.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_16.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_17.n_79.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_17.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_18.n_68.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_18.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_19.n_56.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_19.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_1.n_388.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_1.n_388.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_20.n_55.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_20.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_2.n_276.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_2.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_3.n_226.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_3.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_4.n_222.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_4.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_5.n_218.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_5.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_6.n_207.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_6.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_7.n_179.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_7.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_8.n_163.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_8.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_9.n_153.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_9.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_1.n_160.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_1.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_5.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_0.n_881.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_0.n_881.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_10.n_134.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_10.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_11.n_132.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_11.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_12.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_13.n_118.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_13.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_14.n_102.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_14.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_15.n_88.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_15.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_16.n_88.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_16.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_17.n_79.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_17.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_18.n_68.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_18.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_19.n_56.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_19.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_1.n_388.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_1.n_388.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_20.n_55.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_20.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_2.n_276.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_2.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_3.n_226.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_3.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_4.n_222.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_4.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_5.n_218.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_5.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_6.n_207.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_6.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_7.n_179.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_7.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_8.n_163.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_8.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_9.n_153.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_9.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_1.n_160.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_1.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_5.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_0.n_1606.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_0.n_1606.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_10.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_11.n_79.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_11.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_12.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_13.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_14.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_15.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_16.n_38.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_16.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_17.n_37.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_17.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_18.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_1.n_1039.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_1.n_1039.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_2.n_436.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_2.n_436.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_3.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_4.n_127.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_4.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_5.n_119.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_5.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_6.n_92.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_6.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_7.n_91.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_7.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_8.n_90.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_8.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_9.n_87.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_9.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_0.n_510.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_0.n_510.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_10.n_124.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_10.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_11.n_110.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_11.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_12.n_86.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_12.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_13.n_57.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_13.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_14.n_49.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_14.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_15.n_43.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_15.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_16.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_17.n_31.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_17.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_18.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_1.n_441.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_1.n_441.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_2.n_436.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_2.n_436.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_3.n_297.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_3.n_297.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_4.n_296.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_4.n_296.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_5.n_294.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_5.n_294.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_6.n_235.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_6.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_7.n_218.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_7.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_8.n_204.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_8.n_204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_9.n_203.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_9.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_0.n_461.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_0.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_10.n_105.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_10.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_11.n_85.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_11.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_12.n_33.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_12.n_33.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_5.n_153.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_5.n_153.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_7.n_133.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_7.n_133.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_9.n_127.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_9.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_2.n_1757.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_2.n_1757.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_3.n_1018.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_3.n_1018.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_4.n_991.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_4.n_991.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_5.n_568.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_5.n_568.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_6.n_556.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_6.n_556.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_7.n_464.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_7.n_464.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_8.n_311.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_8.n_311.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_9.n_218.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_9.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_0.n_760.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_0.n_760.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_10.n_272.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_10.n_272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_11.n_260.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_11.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_12.n_254.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_12.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_13.n_161.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_13.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_14.n_123.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_14.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_15.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_1.n_752.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_1.n_752.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_2.n_457.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_2.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_3.n_355.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_3.n_355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_4.n_339.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_4.n_339.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_5.n_322.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_5.n_322.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_6.n_316.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_6.n_316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_7.n_312.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_7.n_312.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_8.n_299.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_8.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_9.n_290.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_9.n_290.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_0.n_6289.PWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_0.n_6289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_1.n_178.PWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_1.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_2.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_3.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_4.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_0.n_1045.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_0.n_1045.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_10.n_153.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_10.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_11.n_146.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_11.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_12.n_142.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_12.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_13.n_132.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_13.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_14.n_126.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_14.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_15.n_114.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_15.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_16.n_109.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_16.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_17.n_86.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_17.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_18.n_83.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_18.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_19.n_78.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_19.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_1.n_925.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_1.n_925.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_20.n_68.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_20.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_21.n_68.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_21.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_22.n_66.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_22.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_23.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_2.n_665.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_2.n_665.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_3.n_280.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_3.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_4.n_280.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_4.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_5.n_233.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_5.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_6.n_229.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_6.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_7.n_210.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_7.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_8.n_182.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_8.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_9.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.PWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_0.n_333.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_0.n_333.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_1.n_262.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_1.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_2.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_3.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_0.n_560.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_0.n_560.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_10.n_61.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_10.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_11.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_12.n_55.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_12.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_13.n_49.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_13.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_14.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_15.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_1.n_425.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_1.n_425.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_2.n_287.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_2.n_287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_3.n_236.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_3.n_236.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_5.n_96.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_5.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_6.n_95.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_6.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_8.n_81.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_8.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_9.n_63.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_9.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_0.n_3450.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_0.n_3450.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_10.n_114.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_10.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_12.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_13.n_86.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_13.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_14.n_82.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_14.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_15.n_38.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_15.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_1.n_2036.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_1.n_2036.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_2.n_1210.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_2.n_1210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_3.n_598.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_3.n_598.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_4.n_507.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_4.n_507.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_5.n_425.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_5.n_425.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_6.n_407.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_6.n_407.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_7.n_370.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_7.n_370.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_8.n_240.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_8.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_9.n_162.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_9.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_0.n_3450.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_0.n_3450.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_10.n_114.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_10.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_11.n_102.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_4.n_507.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_4.n_507.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_5.n_425.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_5.n_425.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_6.n_407.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_6.n_407.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_7.n_370.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_7.n_370.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_8.n_240.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_8.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_9.n_162.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_9.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_0.n_2891.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_0.n_2891.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_10.n_106.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_10.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_11.n_72.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_11.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_12.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_13.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_14.n_31.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_14.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_1.n_2085.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_1.n_2085.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_2.n_1808.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_2.n_1808.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_3.n_1493.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_3.n_1493.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_4.n_490.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_4.n_490.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_5.n_465.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_5.n_465.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_6.n_437.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_6.n_437.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_7.n_312.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_7.n_312.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_8.n_273.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_8.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_9.n_118.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_9.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_0.n_1020.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_0.n_1020.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_10.n_324.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_10.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_11.n_290.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_11.n_290.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_9.n_332.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_9.n_332.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_0.n_862.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_0.n_862.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_10.n_99.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_10.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_11.n_75.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_11.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_12.n_65.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_12.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_13.n_61.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_13.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_14.n_58.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_14.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_16.n_29.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_16.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_17.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_18.n_28.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_18.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_19.n_23.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_19.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_1.n_618.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_1.n_618.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_2.n_533.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_2.n_533.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_3.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_4.n_232.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_4.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_5.n_209.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_5.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_6.n_199.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_6.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_7.n_147.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_7.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_8.n_132.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_8.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_9.n_123.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_9.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_0.n_474.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_0.n_474.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_10.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_1.n_343.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_1.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_2.n_152.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_2.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_3.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_4.n_121.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_4.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_5.n_115.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_5.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_6.n_83.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_6.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_7.n_73.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_7.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_8.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_9.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_10.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_11.n_27.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_11.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_12.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_13.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_1.n_122.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_1.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_2.n_121.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_2.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_3.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_4.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_5.n_68.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_5.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_6.n_67.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_6.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_7.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_8.n_43.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_8.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_9.n_41.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_9.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_0.n_8797.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_0.n_8797.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_10.n_244.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_10.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_11.n_204.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_11.n_204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_12.n_201.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_12.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_13.n_162.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_13.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_14.n_126.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_14.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_15.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_15.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_16.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_16.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_17.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_18.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_18.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_19.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_1.n_4550.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_1.n_4550.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_2.n_504.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_2.n_504.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_3.n_417.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_3.n_417.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_4.n_377.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_4.n_377.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_5.n_367.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_5.n_367.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_6.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_6.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_7.n_292.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_7.n_292.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_8.n_283.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_8.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_9.n_254.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_9.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_0.n_1457.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_0.n_1457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_10.n_429.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_10.n_429.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_11.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_11.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_12.n_325.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_12.n_325.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_13.n_292.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_13.n_292.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_14.n_282.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_14.n_282.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_15.n_224.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_15.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_16.n_221.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_16.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_17.n_216.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_17.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_18.n_206.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_18.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_19.n_201.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_19.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_1.n_1417.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_1.n_1417.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_20.n_176.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_20.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_21.n_168.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_21.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_22.n_144.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_22.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_23.n_134.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_23.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_24.n_123.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_24.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_25.n_111.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_25.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_26.n_104.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_26.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_27.n_75.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_27.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_28.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_28.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_29.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_2.n_1390.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_2.n_1390.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_30.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_30.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_3.n_1084.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_3.n_1084.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_4.n_674.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_4.n_674.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_5.n_664.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_5.n_664.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_6.n_649.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_6.n_649.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_7.n_594.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_7.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_8.n_579.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_8.n_579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_9.n_466.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_9.n_466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_0.n_2902.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_0.n_2902.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_10.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_1.n_1520.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_1.n_1520.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_2.n_1160.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_2.n_1160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_3.n_647.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_3.n_647.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_4.n_449.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_4.n_449.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_5.n_171.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_5.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_6.n_113.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_6.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_7.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_8.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_8.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_9.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_0.n_4497.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_0.n_4497.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_10.n_531.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_10.n_531.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_11.n_470.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_11.n_470.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_12.n_230.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_12.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_13.n_142.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_13.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_14.n_114.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_14.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_15.n_89.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_15.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_16.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_16.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_17.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_17.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_18.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_18.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_19.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_19.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_1.n_3820.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_1.n_3820.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_20.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_20.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_21.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_21.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_22.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_22.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_23.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_24.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_24.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_2.n_1368.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_2.n_1368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_3.n_1254.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_3.n_1254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_4.n_1093.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_4.n_1093.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_5.n_874.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_5.n_874.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_6.n_860.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_6.n_860.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_7.n_814.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_7.n_814.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_8.n_680.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_8.n_680.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_9.n_671.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_9.n_671.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_0.n_9955.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_0.n_9955.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_10.n_118.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_10.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_11.n_99.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_11.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_12.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_12.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_13.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_13.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_14.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_15.n_62.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_15.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_16.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_16.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_17.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_18.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_18.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_19.n_44.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_19.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_1.n_7014.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_1.n_7014.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_20.n_44.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_20.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_21.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_21.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_22.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_2.n_1067.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_2.n_1067.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_3.n_554.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_3.n_554.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_4.n_439.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_4.n_439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_5.n_398.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_5.n_398.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_6.n_366.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_6.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_7.n_360.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_7.n_360.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_8.n_144.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_8.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_9.n_121.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_9.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_0.n_2595.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_0.n_2595.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_10.n_108.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_10.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_11.n_99.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_11.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_12.n_98.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_12.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_13.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_14.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_14.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_15.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_15.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_16.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_1.n_980.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_1.n_980.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_2.n_484.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_2.n_484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_3.n_482.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_3.n_482.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_4.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_4.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_5.n_226.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_5.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_6.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_7.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_7.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_8.n_117.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_8.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_9.n_111.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_9.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_0.n_6485.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_0.n_6485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_10.n_232.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_10.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_11.n_163.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_11.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_12.n_115.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_12.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_13.n_43.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_13.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_14.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_1.n_6131.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_1.n_6131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_2.n_844.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_2.n_844.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_3.n_842.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_3.n_842.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_4.n_604.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_4.n_604.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_5.n_415.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_5.n_415.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_6.n_325.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_6.n_325.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_7.n_298.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_7.n_298.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_8.n_269.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_8.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_9.n_235.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_9.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_0.n_927.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_0.n_927.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_10.n_215.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_10.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_11.n_213.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_11.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_12.n_203.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_12.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_13.n_201.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_13.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_14.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_14.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_15.n_101.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_15.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_16.n_71.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_16.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_17.n_63.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_17.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_18.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_18.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_19.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_19.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_1.n_306.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_1.n_306.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_20.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_20.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_21.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_22.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_22.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_23.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_23.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_2.n_294.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_2.n_294.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_3.n_291.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_3.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_4.n_287.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_4.n_287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_5.n_284.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_5.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_6.n_266.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_6.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_7.n_254.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_7.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_8.n_247.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_8.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_9.n_232.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_9.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_0.n_2595.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_0.n_2595.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_10.n_336.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_10.n_336.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_11.n_323.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_11.n_323.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_12.n_315.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_12.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_13.n_191.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_13.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_14.n_181.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_14.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_15.n_158.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_15.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_16.n_133.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_16.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_17.n_90.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_17.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_18.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_18.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_19.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_1.n_1900.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_1.n_1900.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_20.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_20.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_21.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_2.n_1673.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_2.n_1673.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_3.n_1124.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_3.n_1124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_4.n_890.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_4.n_890.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_5.n_677.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_5.n_677.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_6.n_649.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_6.n_649.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_7.n_588.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_7.n_588.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_8.n_451.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_8.n_451.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_9.n_337.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_9.n_337.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_0.n_946.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_0.n_946.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_10.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_1.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_1.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_2.n_208.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_2.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_3.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_3.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_4.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_5.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_6.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_7.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_8.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_9.n_44.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_9.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_0.n_906.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_0.n_906.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_10.n_226.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_10.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_11.n_224.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_11.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_12.n_210.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_12.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_13.n_190.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_13.n_190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_14.n_108.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_14.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_15.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_1.n_893.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_1.n_893.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_2.n_579.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_2.n_579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_3.n_476.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_3.n_476.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_4.n_413.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_4.n_413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_5.n_347.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_5.n_347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_6.n_255.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_6.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_7.n_245.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_7.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_8.n_236.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_8.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_9.n_228.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_9.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_0.n_817.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_0.n_817.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_10.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_11.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_12.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_12.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_13.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_13.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_1.n_706.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_1.n_706.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_2.n_504.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_2.n_504.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_3.n_321.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_3.n_321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_4.n_221.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_4.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_5.n_115.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_5.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_6.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_7.n_86.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_7.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_8.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_9.n_69.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_9.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_2.n_347.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_2.n_347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_0.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_0.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_10.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_1.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_2.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_3.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_4.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_5.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_6.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_7.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_9.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_10.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_1.n_269.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_1.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_2.n_217.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_2.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_3.n_146.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_3.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_4.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_5.n_112.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_5.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_6.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_7.n_73.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_7.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_8.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_9.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_9.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_0.n_269.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_0.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_10.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_10.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_11.n_71.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_11.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_12.n_67.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_12.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_13.n_64.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_13.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_14.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_14.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_15.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_15.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_16.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_16.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_17.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_18.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_18.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_19.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_19.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_1.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_20.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_20.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_22.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_23.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_24.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_2.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_2.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_3.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_3.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_4.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_5.n_95.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_5.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_6.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_7.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_7.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_8.n_86.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_8.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_9.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_9.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_0.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_0.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_10.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_1.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_2.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_3.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_4.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_5.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_6.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_7.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_9.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_10.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_1.n_269.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_1.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_2.n_217.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_2.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_3.n_146.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_3.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_4.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_5.n_112.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_5.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_6.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_7.n_73.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_7.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_8.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_9.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_9.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_0.n_269.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_0.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_10.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_10.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_11.n_71.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_11.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_12.n_67.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_12.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_13.n_64.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_13.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_14.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_14.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_15.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_15.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_16.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_16.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_17.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_18.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_18.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_19.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_19.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_1.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_20.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_20.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_22.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_23.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_24.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_2.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_2.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_3.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_3.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_4.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_5.n_95.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_5.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_6.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_7.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_7.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_8.n_86.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_8.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_9.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_9.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_0.n_4956.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_0.n_4956.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_10.n_241.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_10.n_241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_11.n_222.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_11.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_12.n_171.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_12.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_13.n_154.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_13.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_1.n_3078.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_1.n_3078.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_2.n_989.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_2.n_989.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_3.n_892.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_3.n_892.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_4.n_755.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_4.n_755.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_5.n_688.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_5.n_688.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_6.n_645.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_6.n_645.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_7.n_451.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_7.n_451.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_8.n_427.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_8.n_427.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_9.n_347.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_9.n_347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_0.n_525.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_0.n_525.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_10.n_142.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_10.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_11.n_141.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_11.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_12.n_141.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_12.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_13.n_126.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_13.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_14.n_121.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_14.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_15.n_113.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_15.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_16.n_105.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_19.n_25.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_2.n_318.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_2.n_318.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_5.n_202.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_5.n_202.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_11.n_222.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_11.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_12.n_171.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_12.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_13.n_154.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_13.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_1.n_3078.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_1.n_3078.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_2.n_989.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_2.n_989.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_3.n_892.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_3.n_892.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_4.n_755.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_4.n_755.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_5.n_688.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_5.n_688.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_6.n_645.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_6.n_645.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_7.n_451.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_7.n_451.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_8.n_427.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_8.n_427.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_9.n_347.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_9.n_347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_0.n_525.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_0.n_525.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_10.n_142.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_10.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_11.n_141.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_11.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_12.n_141.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_12.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_13.n_126.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_13.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_14.n_121.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_14.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_15.n_113.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_15.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_16.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_17.n_62.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_17.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_18.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_19.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_1.n_319.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_1.n_319.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_2.n_318.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_2.n_318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_3.n_222.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_3.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_4.n_211.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_4.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_5.n_202.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_5.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_6.n_194.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_6.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_7.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_8.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_9.n_148.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_9.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_0.n_5510.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_0.n_5510.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_10.n_241.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_10.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_11.n_190.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_11.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_12.n_156.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_12.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_13.n_152.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_13.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_14.n_110.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_14.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_15.n_83.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_15.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_16.n_47.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_16.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_17.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_18.n_23.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_18.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_19.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_1.n_4580.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_1.n_4580.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_2.n_4045.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_2.n_4045.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_3.n_2471.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_3.n_2471.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_4.n_2363.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_4.n_2363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_5.n_2295.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_5.n_2295.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_6.n_1541.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_6.n_1541.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_7.n_1531.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_7.n_1531.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_8.n_1067.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_8.n_1067.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_9.n_575.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_9.n_575.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_0.n_1539.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_0.n_1539.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_10.n_95.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_10.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_11.n_77.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_11.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_12.n_67.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_12.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_13.n_65.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_13.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_14.n_56.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_14.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_15.n_43.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_15.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_16.n_39.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_16.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_17.n_34.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_17.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_1.n_351.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_1.n_351.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_2.n_297.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_2.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_3.n_207.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_3.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_4.n_152.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_4.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_5.n_145.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_5.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_6.n_139.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_6.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_7.n_137.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_7.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_8.n_135.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_8.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_9.n_104.CWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_9.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_0.n_1423.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_0.n_1423.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_10.n_376.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_10.n_376.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_11.n_319.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_11.n_319.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_12.n_305.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_12.n_305.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_13.n_112.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_13.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_14.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_15.n_34.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_15.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_16.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_1.n_1306.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_1.n_1306.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_2.n_1163.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_2.n_1163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_3.n_781.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_3.n_781.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_4.n_724.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_4.n_724.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_5.n_607.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_5.n_607.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_6.n_482.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_6.n_482.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_7.n_476.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_7.n_476.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_8.n_402.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_8.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_9.n_384.CWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_9.n_384.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_0.n_984.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_0.n_984.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_10.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_11.n_52.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_11.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_12.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_13.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_1.n_576.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_1.n_576.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_2.n_333.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_2.n_333.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_3.n_329.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_3.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_4.n_328.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_4.n_328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_5.n_283.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_5.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_7.n_172.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_7.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_8.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_9.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_0.n_984.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_0.n_984.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_10.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_11.n_52.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_11.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_12.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_13.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_1.n_576.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_1.n_576.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_2.n_333.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_2.n_333.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_3.n_329.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_3.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_4.n_328.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_4.n_328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_5.n_283.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_5.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_7.n_172.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_7.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_8.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_9.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_0.n_2004.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_0.n_2004.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_10.n_272.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_10.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_11.n_261.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_11.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_12.n_216.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_12.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_13.n_184.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_13.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_14.n_136.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_14.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_15.n_129.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_15.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_16.n_126.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_16.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_17.n_125.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_17.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_18.n_124.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_18.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_19.n_94.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_19.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_1.n_1835.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_1.n_1835.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_20.n_94.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_20.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_21.n_84.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_21.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_2.n_1185.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_2.n_1185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_3.n_751.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_3.n_751.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_4.n_653.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_4.n_653.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_5.n_386.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_5.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_6.n_358.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_6.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_7.n_323.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_7.n_323.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_8.n_312.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_8.n_312.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_9.n_293.CWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_9.n_293.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_0.n_1174.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_0.n_1174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_10.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_11.n_71.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_11.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_12.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_13.n_43.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_13.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_14.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_15.n_38.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_15.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_16.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_17.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_1.n_813.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_1.n_813.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_2.n_395.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_2.n_395.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_3.n_295.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_3.n_295.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_4.n_271.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_4.n_271.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_5.n_222.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_5.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_6.n_170.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_6.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_7.n_131.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_7.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_8.n_122.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_8.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_9.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_0.n_322.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_0.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_10.n_63.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_10.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_11.n_60.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_11.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_12.n_58.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_12.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_13.n_56.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_13.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_16.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_17.n_43.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_17.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_19.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_1.n_274.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_1.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_20.n_25.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_20.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_21.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_2.n_138.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_2.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_3.n_98.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_3.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_4.n_95.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_4.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_5.n_94.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_5.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_6.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_7.n_86.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_7.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_8.n_76.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_8.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_9.n_63.CWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_9.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_0.n_1422.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_0.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_1.n_409.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_1.n_409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_2.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_3.n_98.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_3.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_4.n_84.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_4.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_5.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_0.n_1107.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_0.n_1107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_10.n_46.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_10.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_11.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_1.n_569.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_1.n_569.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_2.n_224.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_2.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_3.n_184.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_3.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_4.n_178.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_4.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_5.n_156.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_5.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_6.n_107.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_6.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_7.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_8.n_64.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_8.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_0.n_1098.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_0.n_1098.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_10.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_11.n_52.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_11.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_12.n_30.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_12.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_13.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_1.n_737.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_1.n_737.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_2.n_446.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_2.n_446.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_3.n_285.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_3.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_4.n_97.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_4.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_5.n_95.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_5.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_6.n_88.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_6.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_7.n_88.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_7.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_8.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_9.n_61.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_9.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_0.n_491.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_0.n_491.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_1.n_349.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_1.n_349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_2.n_243.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_2.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_3.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_0.n_1582.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_0.n_1582.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_10.n_78.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_10.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_1.n_1366.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_1.n_1366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_2.n_1178.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_2.n_1178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_3.n_658.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_3.n_658.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_4.n_423.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_4.n_423.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_5.n_393.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_5.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_6.n_325.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_6.n_325.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_7.n_193.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_7.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_8.n_177.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_8.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_9.n_168.CWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_9.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_0.n_4043.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_0.n_4043.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_10.n_363.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_10.n_363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_11.n_296.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_11.n_296.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_12.n_252.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_12.n_252.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_13.n_250.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_13.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_14.n_228.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_14.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_15.n_157.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_15.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_16.n_127.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_16.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_17.n_120.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_17.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_18.n_113.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_18.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_19.n_105.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_19.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_1.n_2491.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_1.n_2491.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_20.n_87.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_20.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_21.n_40.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_21.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_22.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_23.n_20.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_23.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_2.n_652.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_2.n_652.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_3.n_555.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_3.n_555.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_4.n_532.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_4.n_532.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_5.n_468.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_5.n_468.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_6.n_457.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_6.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_7.n_440.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_7.n_440.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_8.n_428.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_8.n_428.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_9.n_375.CWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_9.n_375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK480-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK480-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK480-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK480-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_0.n_1807.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_0.n_1807.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_10.n_51.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_10.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_11.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_12.n_30.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_12.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_1.n_1370.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_1.n_1370.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_2.n_1076.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_2.n_1076.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_3.n_442.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_3.n_442.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_4.n_326.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_4.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_5.n_211.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_5.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_6.n_204.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_6.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_7.n_157.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_7.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_8.n_126.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_8.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_0.n_1310.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_0.n_1310.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_10.n_163.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_10.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_11.n_84.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_11.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_12.n_81.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_12.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_13.n_72.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_13.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_14.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_15.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_16.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_17.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_1.n_512.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_1.n_512.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_2.n_231.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_2.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_3.n_210.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_3.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_4.n_207.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_4.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_5.n_201.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_5.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_6.n_195.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_6.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_7.n_188.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_7.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_8.n_184.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_8.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_9.n_183.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_9.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_0.n_10966.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_0.n_10966.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_10.n_482.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_10.n_482.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_11.n_409.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_11.n_409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_12.n_396.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_12.n_396.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_13.n_287.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_13.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_14.n_273.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_14.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_15.n_264.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_15.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_16.n_264.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_16.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_17.n_236.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_17.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_18.n_229.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_18.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_19.n_130.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_19.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_1.n_3205.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_1.n_3205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_20.n_109.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_20.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_21.n_70.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_21.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_22.n_40.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_22.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_23.n_34.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_23.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_24.n_28.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_24.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_25.n_27.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_25.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_26.n_22.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_26.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_27.n_22.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_27.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_2.n_3028.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_2.n_3028.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_3.n_3007.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_3.n_3007.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_4.n_2743.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_4.n_2743.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_5.n_2705.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_5.n_2705.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_6.n_2266.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_6.n_2266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_7.n_724.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_7.n_724.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_8.n_566.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_8.n_566.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_9.n_538.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_9.n_538.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_0.n_3935.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_0.n_3935.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_10.n_80.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_10.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_11.n_65.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_11.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_12.n_63.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_12.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_13.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_1.n_1206.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_1.n_1206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_2.n_1045.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_2.n_1045.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_3.n_754.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_3.n_754.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_4.n_693.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_4.n_693.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_5.n_653.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_5.n_653.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_6.n_528.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_6.n_528.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_7.n_471.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_7.n_471.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_8.n_137.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_8.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_9.n_104.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_9.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_0.n_5288.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_0.n_5288.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_10.n_378.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_10.n_378.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_11.n_318.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_11.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_12.n_300.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_12.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_13.n_283.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_13.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_14.n_211.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_14.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_15.n_159.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_15.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_16.n_117.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_16.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_17.n_86.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_17.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_18.n_60.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_18.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_19.n_46.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_19.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_1.n_1811.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_1.n_1811.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_20.n_23.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_20.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_2.n_1806.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_2.n_1806.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_3.n_1302.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_3.n_1302.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_4.n_1176.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_4.n_1176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_5.n_1085.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_5.n_1085.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_6.n_764.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_6.n_764.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_7.n_597.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_7.n_597.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_8.n_414.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_8.n_414.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_9.n_413.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_9.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_0.n_14853.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_0.n_14853.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_10.n_268.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_10.n_268.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_11.n_222.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_11.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_12.n_130.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_12.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_13.n_103.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_13.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_14.n_80.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_14.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_15.n_80.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_15.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_16.n_70.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_16.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_17.n_58.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_17.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_18.n_43.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_18.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_19.n_40.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_19.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_1.n_3341.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_1.n_3341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_20.n_27.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_20.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_2.n_1675.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_2.n_1675.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_3.n_1056.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_3.n_1056.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_4.n_1042.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_4.n_1042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_5.n_985.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_5.n_985.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_6.n_678.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_6.n_678.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_7.n_589.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_7.n_589.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_8.n_573.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_8.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_9.n_377.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_9.n_377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_0.n_110.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_0.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_1.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_2.n_72.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_2.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_3.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_4.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_5.n_54.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_5.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_6.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_8.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_9.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_10.n_181.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_10.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_11.n_161.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_11.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_12.n_140.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_12.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_13.n_111.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_13.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_14.n_90.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_14.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_15.n_59.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_15.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_16.n_59.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_16.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_17.n_53.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_17.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_18.n_53.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_18.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_19.n_45.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_19.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_1.n_662.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_1.n_662.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_20.n_41.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_20.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_22.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_0.n_9566.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_0.n_9566.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_10.n_141.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_10.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_11.n_77.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_11.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_12.n_49.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_12.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_13.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_14.n_36.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_14.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_15.n_35.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_15.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_16.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_1.n_3402.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_1.n_3402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_2.n_2761.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_2.n_2761.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_3.n_2600.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_3.n_2600.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_4.n_2471.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_4.n_2471.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_5.n_1576.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_5.n_1576.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_6.n_1267.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_6.n_1267.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_7.n_1096.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_7.n_1096.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_8.n_809.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_8.n_809.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_9.n_551.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_9.n_551.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_0.n_453.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_0.n_453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_10.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_1.n_101.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_1.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_2.n_73.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_2.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_3.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_4.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_5.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_6.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_7.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_8.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_0.n_5377.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_0.n_5377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_10.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_11.n_31.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_11.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_1.n_1621.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_1.n_1621.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_2.n_963.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_2.n_963.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_3.n_694.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_3.n_694.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_4.n_164.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_4.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_5.n_114.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_5.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_6.n_107.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_6.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_7.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_8.n_80.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_8.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_9.n_78.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_9.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_0.n_4372.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_0.n_4372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_1.n_1459.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_1.n_1459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_2.n_493.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_2.n_493.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_3.n_230.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_3.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_4.n_208.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_4.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_0.n_5595.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_0.n_5595.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_10.n_171.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_10.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_11.n_165.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_11.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_12.n_144.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_12.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_13.n_61.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_13.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_14.n_58.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_14.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_15.n_54.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_15.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_16.n_47.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_16.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_17.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_18.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_19.n_20.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_19.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_1.n_2444.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_1.n_2444.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_2.n_789.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_2.n_789.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_3.n_580.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_3.n_580.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_4.n_457.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_4.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_5.n_381.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_5.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_6.n_363.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_6.n_363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_7.n_333.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_7.n_333.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_8.n_304.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_8.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_9.n_200.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_9.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_0.n_13824.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_0.n_13824.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_10.n_492.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_10.n_492.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_11.n_276.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_11.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_12.n_260.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_12.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_13.n_143.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_13.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_14.n_108.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_14.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_15.n_58.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_15.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_17.n_39.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_17.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_1.n_9758.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_1.n_9758.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_2.n_3244.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_2.n_3244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_3.n_2916.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_3.n_2916.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_4.n_2866.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_4.n_2866.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_5.n_1536.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_5.n_1536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_6.n_1117.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_6.n_1117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_7.n_845.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_7.n_845.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_8.n_614.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_8.n_614.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_9.n_566.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_9.n_566.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_0.n_13753.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_0.n_13753.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_10.n_693.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_10.n_693.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_11.n_336.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_11.n_336.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_12.n_232.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_12.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_13.n_126.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_13.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_14.n_68.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_14.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_15.n_48.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_15.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_16.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_17.n_33.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_17.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_18.n_32.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_18.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_19.n_31.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_19.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_1.n_6071.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_1.n_6071.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_20.n_30.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_20.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_2.n_4373.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_2.n_4373.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_3.n_3543.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_3.n_3543.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_4.n_2442.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_4.n_2442.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_5.n_1772.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_5.n_1772.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_6.n_1269.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_6.n_1269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_7.n_1222.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_7.n_1222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_8.n_1198.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_8.n_1198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_9.n_702.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_9.n_702.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_0.n_490.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_0.n_490.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_10.n_83.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_10.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_11.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_12.n_63.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_12.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_13.n_49.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_13.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_14.n_33.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_14.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_15.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_1.n_372.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_1.n_372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_2.n_148.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_2.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_3.n_138.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_3.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_4.n_102.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_4.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_5.n_96.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_5.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_6.n_90.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_6.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_7.n_88.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_7.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_8.n_85.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_8.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_9.n_83.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_9.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_0.n_5790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_10.n_203.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_10.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_11.n_172.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_11.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_12.n_161.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_12.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_13.n_136.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_13.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_14.n_130.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_14.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_15.n_124.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_15.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_16.n_111.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_16.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_17.n_91.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_17.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_18.n_69.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_18.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_19.n_62.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_19.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_1.n_2080.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_1.n_2080.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_20.n_55.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_20.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_21.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_2.n_1204.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_2.n_1204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_3.n_827.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_3.n_827.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_4.n_717.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_4.n_717.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_5.n_531.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_5.n_531.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_6.n_429.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_6.n_429.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_7.n_327.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_7.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_8.n_252.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_8.n_252.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_9.n_219.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_9.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-H1-ENCSR000BQG.bestfold.profile.pattern_0.n_1592.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-H1-ENCSR000BQG.bestfold.profile.pattern_0.n_1592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-H1-ENCSR000BQG.bestfold.profile.pattern_1.n_321.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-H1-ENCSR000BQG.bestfold.profile.pattern_1.n_321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-H1-ENCSR000BQG.bestfold.profile.pattern_2.n_159.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-H1-ENCSR000BQG.bestfold.profile.pattern_2.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-H1-ENCSR000BQG.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-H1-ENCSR000BQG.bestfold.profile.pattern_3.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_0.n_11756.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_0.n_11756.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_10.n_43.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_10.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_11.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_12.n_38.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_12.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_13.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_14.n_32.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_14.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_15.n_29.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_15.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_16.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_17.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_1.n_6151.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_1.n_6151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_2.n_3050.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_2.n_3050.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_3.n_2190.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_3.n_2190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_4.n_719.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_4.n_719.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_5.n_483.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_5.n_483.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_6.n_435.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_6.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_7.n_406.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_7.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_8.n_243.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_8.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_9.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_10.n_379.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_10.n_379.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_11.n_378.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_11.n_378.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_12.n_358.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_12.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_13.n_332.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_13.n_332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_14.n_275.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_14.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_15.n_267.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_15.n_267.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_16.n_251.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_16.n_251.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_17.n_223.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_17.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_18.n_198.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_18.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_19.n_191.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_19.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_1.n_1143.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_1.n_1143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_20.n_151.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_20.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_21.n_138.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_21.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_22.n_138.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_22.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_23.n_113.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_23.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_24.n_104.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_24.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_25.n_101.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_25.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_26.n_92.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_26.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_27.n_89.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_27.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_28.n_78.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_28.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_29.n_76.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_29.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_2.n_848.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_2.n_848.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_30.n_73.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_30.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_31.n_66.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_31.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_32.n_61.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_32.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_33.n_57.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_33.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_34.n_57.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_34.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_35.n_56.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_35.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_36.n_56.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_36.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_37.n_52.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_37.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_38.n_41.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_38.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_39.n_35.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_39.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_3.n_698.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_3.n_698.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_40.n_34.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_40.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_4.n_573.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_4.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_5.n_557.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_5.n_557.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_6.n_550.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_6.n_550.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_7.n_495.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_7.n_495.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_8.n_442.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_8.n_442.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_9.n_381.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_9.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_0.n_406.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_0.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_1.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_2.n_129.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_2.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_3.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_0.n_5225.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_0.n_5225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_1.n_3099.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_1.n_3099.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_2.n_2018.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_2.n_2018.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_3.n_349.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_3.n_349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_4.n_159.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_4.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_5.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_6.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_8.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_9.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_0.n_2515.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_0.n_2515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_1.n_440.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_1.n_440.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_2.n_356.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_2.n_356.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_3.n_249.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_3.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_4.n_176.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_4.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_5.n_149.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_5.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_6.n_125.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_6.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_7.n_95.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_7.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_0.n_1734.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_0.n_1734.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_1.n_829.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_1.n_829.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_2.n_613.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_2.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_3.n_599.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_3.n_599.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_4.n_168.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_4.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_5.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_6.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_7.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_8.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_0.n_6340.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_0.n_6340.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_10.n_59.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_10.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_11.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_12.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_13.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_1.n_3790.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_1.n_3790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_2.n_1751.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_2.n_1751.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_3.n_928.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_3.n_928.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_4.n_362.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_4.n_362.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_5.n_265.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_5.n_265.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_6.n_245.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_6.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_7.n_97.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_7.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_8.n_83.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_8.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_9.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.CWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_0.n_31.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_0.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_2.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_0.n_5848.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_0.n_5848.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_10.n_273.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_10.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_11.n_190.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_11.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_12.n_133.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_12.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_13.n_57.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_13.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_14.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_15.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_16.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_17.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_18.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_1.n_4508.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_1.n_4508.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_2.n_2395.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_2.n_2395.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_3.n_1928.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_3.n_1928.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_4.n_796.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_4.n_796.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_5.n_582.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_5.n_582.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_6.n_530.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_6.n_530.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_7.n_458.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_7.n_458.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_8.n_368.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_8.n_368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_9.n_278.CWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_9.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_0.n_2361.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_0.n_2361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_10.n_118.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_10.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_11.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_11.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_12.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_12.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_13.n_37.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_13.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_14.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_1.n_1573.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_1.n_1573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_2.n_1289.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_2.n_1289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_3.n_855.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_3.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_4.n_344.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_4.n_344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_5.n_312.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_5.n_312.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_6.n_289.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_6.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_7.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_8.n_206.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_8.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_9.n_135.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_9.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_0.n_1249.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_0.n_1249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_1.n_236.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_1.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_2.n_162.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_2.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_3.n_155.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_3.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_5.n_101.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_5.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_6.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_7.n_64.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_7.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_8.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_9.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_0.n_4974.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_0.n_4974.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_10.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_10.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_12.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_13.n_29.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_13.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_1.n_774.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_1.n_774.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_2.n_328.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_2.n_328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_3.n_195.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_3.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_4.n_187.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_4.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_5.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_5.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_6.n_142.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_6.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_7.n_111.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_7.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_8.n_97.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_8.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_9.n_95.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_9.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_0.n_1567.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_0.n_1567.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_1.n_1268.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_1.n_1268.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_2.n_785.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_2.n_785.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_3.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_3.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_4.n_241.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_4.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_5.n_42.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_5.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_6.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_0.n_1151.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_0.n_1151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_1.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_2.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_2.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_3.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_4.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_5.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_5.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_6.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_7.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_8.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_0.n_1409.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_0.n_1409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_1.n_155.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_1.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_2.n_108.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_2.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_3.n_107.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_3.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_4.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_4.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_5.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_6.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_0.n_15649.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_0.n_15649.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_10.n_274.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_10.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_11.n_270.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_11.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_12.n_258.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_12.n_258.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_13.n_229.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_13.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_14.n_195.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_14.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_15.n_188.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_15.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_16.n_185.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_16.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_17.n_177.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_17.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_18.n_148.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_18.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_19.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_19.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_1.n_4136.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_1.n_4136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_20.n_85.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_20.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_21.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_21.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_22.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_22.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_23.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_23.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_24.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_24.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_25.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_25.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_26.n_36.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_26.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_27.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_27.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_28.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_28.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_2.n_1987.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_2.n_1987.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_3.n_1150.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_3.n_1150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_4.n_835.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_4.n_835.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_5.n_652.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_5.n_652.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_6.n_577.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_6.n_577.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_7.n_468.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_7.n_468.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_8.n_334.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_8.n_334.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_9.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_9.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_0.n_2445.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_0.n_2445.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_1.n_493.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_1.n_493.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_2.n_365.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_2.n_365.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_3.n_181.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_3.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_4.n_97.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_4.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_5.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_7.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_0.n_20892.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_0.n_20892.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_10.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_10.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_11.n_123.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_11.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_12.n_112.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_12.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_13.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_14.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_14.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_15.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_15.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_16.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_16.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_17.n_60.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_17.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_18.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_18.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_19.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_1.n_2377.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_1.n_2377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_2.n_917.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_2.n_917.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_3.n_859.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_3.n_859.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_4.n_690.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_4.n_690.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_5.n_583.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_5.n_583.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_6.n_359.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_6.n_359.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_7.n_355.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_7.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_8.n_235.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_8.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_9.n_195.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_9.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_0.n_20420.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_0.n_20420.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_10.n_214.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_10.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_11.n_208.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_11.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_12.n_168.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_12.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_13.n_163.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_13.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_14.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_14.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_15.n_100.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_15.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_16.n_98.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_16.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_17.n_96.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_17.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_18.n_85.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_18.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_19.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_1.n_1359.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_1.n_1359.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_20.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_20.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_21.n_69.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_21.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_22.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_22.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_23.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_23.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_24.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_24.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_25.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_25.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_26.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_26.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_2.n_1238.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_2.n_1238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_3.n_892.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_3.n_892.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_4.n_693.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_4.n_693.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_5.n_390.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_5.n_390.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_6.n_345.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_6.n_345.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_7.n_315.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_7.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_8.n_306.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_8.n_306.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_9.n_230.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_9.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR345YWJ.bestfold.profile.pattern_0.n_2133.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR345YWJ.bestfold.profile.pattern_0.n_2133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR345YWJ.bestfold.profile.pattern_1.n_481.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR345YWJ.bestfold.profile.pattern_1.n_481.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_0.n_6564.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_0.n_6564.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_10.n_361.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_10.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_11.n_274.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_11.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_12.n_99.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_12.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_13.n_59.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_13.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_14.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_15.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_1.n_5609.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_1.n_5609.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_2.n_1540.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_2.n_1540.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_3.n_959.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_3.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_4.n_954.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_4.n_954.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_5.n_789.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_5.n_789.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_6.n_684.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_6.n_684.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_7.n_589.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_7.n_589.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_8.n_522.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_8.n_522.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_9.n_484.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_9.n_484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_0.n_6344.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_0.n_6344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_10.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_10.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_11.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_11.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_1.n_892.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_1.n_892.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_2.n_429.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_2.n_429.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_3.n_244.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_3.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_4.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_4.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_5.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_5.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_6.n_120.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_6.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_7.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_7.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_8.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_9.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_9.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_0.n_4542.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_0.n_4542.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_1.n_1896.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_1.n_1896.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_2.n_367.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_2.n_367.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_3.n_203.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_3.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_4.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_6.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_0.n_856.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_0.n_856.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_10.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_11.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_11.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_1.n_535.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_1.n_535.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_2.n_301.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_2.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_3.n_285.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_3.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_4.n_199.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_4.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_5.n_162.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_5.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_6.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_6.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_7.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_7.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_8.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_9.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_0.n_2820.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_0.n_2820.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_1.n_580.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_1.n_580.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_2.n_332.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_2.n_332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_3.n_331.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_3.n_331.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_4.n_181.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_4.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_5.n_90.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_5.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_6.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_7.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_8.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_0.n_400.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_0.n_400.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_10.n_131.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_10.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_11.n_119.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_11.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_12.n_108.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_12.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_13.n_104.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_13.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_14.n_84.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_14.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_15.n_61.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_15.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_16.n_51.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_16.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_17.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_1.n_389.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_1.n_389.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_2.n_344.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_2.n_344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_3.n_284.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_3.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_4.n_276.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_4.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_5.n_273.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_5.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_6.n_268.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_6.n_268.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_7.n_182.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_7.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_8.n_151.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_8.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_9.n_148.CWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_9.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_0.n_600.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_0.n_600.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_10.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_11.n_63.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_11.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_12.n_61.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_12.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_13.n_57.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_13.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_14.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_15.n_51.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_15.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_16.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_17.n_47.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_17.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_18.n_45.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_18.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_19.n_37.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_19.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_1.n_288.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_1.n_288.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_20.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_21.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_22.n_31.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_22.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_23.n_20.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_23.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_2.n_159.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_2.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_3.n_150.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_3.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_4.n_131.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_4.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_5.n_102.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_5.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_6.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_7.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_8.n_79.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_8.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_0.n_176.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_0.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_10.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_11.n_64.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_11.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_12.n_58.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_12.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_13.n_58.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_13.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_15.n_54.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_15.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_16.n_51.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_16.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_17.n_49.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_17.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_18.n_43.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_18.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_19.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_1.n_169.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_1.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_20.n_24.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_20.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_2.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_3.n_144.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_3.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_4.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_5.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_6.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_7.n_86.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_7.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_8.n_72.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_8.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_9.n_68.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_9.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_0.n_212.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_0.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_1.n_66.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_1.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_2.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_3.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_5.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_0.n_5535.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_0.n_5535.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_10.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_1.n_1402.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_1.n_1402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_2.n_765.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_2.n_765.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_3.n_443.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_3.n_443.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_4.n_412.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_4.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_5.n_401.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_5.n_401.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_6.n_365.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_6.n_365.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_7.n_302.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_7.n_302.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_8.n_250.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_8.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_9.n_99.CWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_9.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_0.n_226.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_0.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_1.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_2.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_6.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_0.n_289.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_0.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_1.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_2.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_0.n_138.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_0.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_1.n_36.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_1.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_2.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_0.n_5220.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_0.n_5220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_10.n_262.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_10.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_11.n_225.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_11.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_12.n_185.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_12.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_13.n_171.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_13.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_14.n_162.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_14.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_15.n_150.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_15.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_16.n_147.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_16.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_17.n_140.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_17.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_18.n_101.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_18.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_19.n_93.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_19.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_1.n_1451.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_1.n_1451.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_20.n_78.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_20.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_21.n_75.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_21.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_22.n_69.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_22.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_23.n_67.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_23.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_24.n_65.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_24.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_25.n_60.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_25.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_26.n_53.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_26.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_27.n_48.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_27.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_28.n_42.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_28.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_29.n_33.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_29.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_2.n_1322.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_2.n_1322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_30.n_24.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_30.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_3.n_1243.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_3.n_1243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_4.n_791.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_4.n_791.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_5.n_630.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_5.n_630.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_6.n_594.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_6.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_7.n_498.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_7.n_498.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_8.n_385.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_8.n_385.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_9.n_344.CWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_9.n_344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_0.n_2719.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_0.n_2719.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_10.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_11.n_72.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_11.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_12.n_60.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_12.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_13.n_53.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_13.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_16.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_17.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_1.n_394.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_1.n_394.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_2.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_3.n_225.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_3.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_4.n_200.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_4.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_5.n_155.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_5.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_6.n_132.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_6.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_7.n_129.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_7.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_8.n_102.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_8.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_9.n_93.CWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_9.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_0.n_679.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_0.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_1.n_189.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_1.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_2.n_181.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_2.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_3.n_77.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_3.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_4.n_66.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_4.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_6.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_6.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_7.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_0.n_346.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_0.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_1.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_2.n_114.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_2.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_3.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_4.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_5.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_6.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_7.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_0.n_679.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_0.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_1.n_189.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_1.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_2.n_181.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_2.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_3.n_77.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_3.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_4.n_66.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_4.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_6.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_6.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_7.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_0.n_346.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_0.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_1.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_2.n_114.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_2.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_3.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_4.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_5.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_6.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_7.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_0.n_259.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_0.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_10.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_12.n_28.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_12.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_13.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_1.n_238.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_1.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_2.n_203.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_2.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_3.n_175.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_3.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_4.n_153.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_4.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_5.n_147.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_5.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_6.n_138.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_6.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_7.n_102.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_7.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_8.n_100.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_8.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_9.n_73.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_9.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_0.n_39.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_0.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_1.n_37.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_1.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_0.n_405.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_0.n_405.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_1.n_246.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_1.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_2.n_100.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_2.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_3.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_4.n_69.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_4.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_5.n_62.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_5.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_6.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_7.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK599-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK599-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK599-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK599-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_0.n_2032.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_0.n_2032.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_10.n_156.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_10.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_11.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_12.n_129.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_12.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_13.n_89.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_13.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_14.n_71.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_14.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_15.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_1.n_1838.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_1.n_1838.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_2.n_1243.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_2.n_1243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_3.n_868.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_3.n_868.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_4.n_570.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_4.n_570.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_5.n_376.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_5.n_376.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_6.n_367.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_6.n_367.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_7.n_341.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_7.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_8.n_276.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_8.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_9.n_227.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_9.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_0.n_2034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_1.n_518.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_1.n_518.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_2.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_3.n_251.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_3.n_251.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_4.n_127.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_4.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_5.n_92.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_5.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_6.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_7.n_33.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_7.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_8.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_9.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_0.n_8064.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_0.n_8064.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_1.n_1667.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_1.n_1667.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_2.n_1138.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_2.n_1138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_3.n_441.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_3.n_441.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_4.n_399.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_4.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_5.n_333.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_5.n_333.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_6.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_7.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_0.n_1316.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_0.n_1316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_10.n_104.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_10.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_11.n_100.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_11.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_12.n_92.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_12.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_13.n_76.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_13.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_14.n_64.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_14.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_15.n_44.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_15.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_16.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_17.n_31.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_17.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_18.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_19.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_1.n_981.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_1.n_981.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_2.n_263.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_2.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_3.n_234.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_3.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_4.n_219.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_4.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_5.n_178.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_5.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_6.n_157.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_6.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_7.n_121.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_7.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_8.n_115.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_8.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_9.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_0.n_2424.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_0.n_2424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_10.n_396.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_10.n_396.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_11.n_396.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_11.n_396.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_12.n_388.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_12.n_388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_13.n_299.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_13.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_14.n_274.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_14.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_15.n_213.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_15.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_16.n_163.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_16.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_17.n_55.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_17.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_18.n_50.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_18.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_1.n_1840.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_1.n_1840.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_2.n_1421.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_2.n_1421.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_3.n_950.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_3.n_950.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_4.n_842.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_4.n_842.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_5.n_758.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_5.n_758.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_6.n_653.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_6.n_653.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_7.n_519.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_7.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_8.n_492.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_8.n_492.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_9.n_460.CWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_9.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_0.n_610.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_0.n_610.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_10.n_133.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_10.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_11.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_12.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_13.n_30.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_13.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_1.n_540.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_1.n_540.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_2.n_404.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_2.n_404.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_3.n_376.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_3.n_376.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_4.n_280.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_4.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_5.n_244.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_5.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_6.n_244.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_6.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_7.n_228.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_7.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_8.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_9.n_138.CWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_9.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_0.n_3417.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_0.n_3417.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_1.n_326.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_1.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_2.n_105.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_2.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_3.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_0.n_3417.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_0.n_3417.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_1.n_326.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_1.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_2.n_105.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_2.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_3.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-HEK378-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_21.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-HEK378-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-HEK378-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_20.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-HEK378-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_0.n_3565.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_0.n_3565.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_10.n_160.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_10.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_11.n_131.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_11.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_12.n_126.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_12.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_13.n_110.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_13.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_14.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_15.n_52.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_15.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_16.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_17.n_38.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_17.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_18.n_36.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_18.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_19.n_20.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_19.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_1.n_1019.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_1.n_1019.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_2.n_832.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_2.n_832.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_3.n_709.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_3.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_4.n_693.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_4.n_693.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_5.n_413.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_5.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_6.n_393.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_6.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_7.n_380.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_7.n_380.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_8.n_298.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_8.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_9.n_235.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_9.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HEK517-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HEK517-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HEK517-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HEK517-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_0.n_1061.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_0.n_1061.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_1.n_749.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_1.n_749.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_2.n_371.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_2.n_371.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_3.n_221.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_3.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_4.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_5.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_6.n_103.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_6.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_7.n_75.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_7.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_8.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_9.n_31.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_9.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_0.n_28879.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_0.n_28879.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_10.n_47.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_10.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_11.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_1.n_842.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_1.n_842.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_2.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_3.n_236.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_3.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_4.n_205.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_4.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_5.n_202.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_5.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_6.n_136.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_6.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_7.n_130.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_7.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_8.n_76.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_8.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_9.n_59.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_9.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_0.n_645.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_0.n_645.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_10.n_98.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_10.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_11.n_95.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_11.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_12.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_13.n_49.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_13.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_14.n_48.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_14.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_15.n_41.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_15.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_1.n_376.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_1.n_376.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_2.n_213.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_2.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_3.n_191.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_3.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_4.n_140.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_4.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_5.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_6.n_134.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_6.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_7.n_132.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_7.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_8.n_118.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_8.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_9.n_115.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_9.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_0.n_10251.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_0.n_10251.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_1.n_1716.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_1.n_1716.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_2.n_1610.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_2.n_1610.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_3.n_1223.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_3.n_1223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_0.n_1022.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_0.n_1022.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_10.n_81.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_10.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_11.n_63.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_11.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_12.n_52.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_12.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_13.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_1.n_274.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_1.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_2.n_255.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_2.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_3.n_181.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_3.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_4.n_176.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_4.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_5.n_153.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_5.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_6.n_143.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_6.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_7.n_134.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_7.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_8.n_93.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_8.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_9.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_0.n_528.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_0.n_528.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_10.n_68.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_10.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_11.n_62.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_11.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_1.n_517.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_1.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_2.n_364.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_2.n_364.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_3.n_209.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_3.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_4.n_187.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_4.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_5.n_154.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_5.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_6.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_7.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_8.n_111.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_8.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_9.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_1.n_699.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_1.n_699.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_2.n_245.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_2.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_3.n_223.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_3.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_4.n_199.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_4.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_5.n_164.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_5.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_6.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_7.n_88.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_7.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_8.n_85.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_8.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_0.n_363.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_0.n_363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_10.n_73.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_10.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_11.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_12.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_13.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_14.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_15.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_16.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_17.n_34.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_17.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_18.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_19.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_1.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_2.n_196.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_2.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_3.n_186.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_3.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_4.n_143.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_4.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_5.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_6.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_7.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_8.n_89.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_8.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_1.n_699.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_1.n_699.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_2.n_245.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_2.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_3.n_223.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_3.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_4.n_199.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_4.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_5.n_164.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_5.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_6.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_7.n_88.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_7.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_8.n_85.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_8.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_0.n_363.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_0.n_363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_10.n_73.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_10.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_11.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_12.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_13.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_14.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_15.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_16.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_17.n_34.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_17.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_18.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_19.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_1.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_2.n_196.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_2.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_3.n_186.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_3.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_4.n_143.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_4.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_5.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_6.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_7.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_8.n_89.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_8.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_0.n_2751.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_0.n_2751.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_1.n_858.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_1.n_858.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_2.n_166.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_2.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_3.n_151.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_3.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_4.n_92.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_4.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_5.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_0.n_1579.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_0.n_1579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_10.n_147.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_10.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_11.n_130.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_11.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_12.n_127.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_12.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_13.n_127.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_13.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_14.n_120.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_14.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_15.n_113.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_15.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_16.n_108.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_16.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_17.n_99.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_17.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_18.n_98.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_18.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_19.n_79.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_19.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_1.n_918.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_1.n_918.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_20.n_68.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_20.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_21.n_60.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_21.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_22.n_52.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_22.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_23.n_44.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_23.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_24.n_42.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_24.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_25.n_38.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_25.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_26.n_28.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_26.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_2.n_909.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_2.n_909.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_3.n_469.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_3.n_469.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_4.n_456.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_4.n_456.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_5.n_417.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_5.n_417.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_6.n_208.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_6.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_7.n_185.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_7.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_8.n_183.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_8.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_9.n_177.CWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_9.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_0.n_2451.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_0.n_2451.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_10.n_320.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_10.n_320.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_11.n_251.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_11.n_251.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_12.n_248.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_12.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_13.n_193.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_13.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_14.n_182.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_14.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_15.n_88.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_15.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_16.n_47.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_16.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_17.n_30.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_17.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_18.n_26.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_18.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_19.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_1.n_1874.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_1.n_1874.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_2.n_1099.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_2.n_1099.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_3.n_976.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_3.n_976.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_4.n_738.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_4.n_738.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_5.n_657.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_5.n_657.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_6.n_566.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_6.n_566.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_7.n_509.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_7.n_509.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_8.n_401.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_8.n_401.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_9.n_339.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_9.n_339.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_0.n_1286.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_0.n_1286.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_10.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_11.n_31.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_11.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_1.n_699.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_1.n_699.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_2.n_552.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_2.n_552.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_3.n_490.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_3.n_490.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_4.n_461.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_4.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_5.n_432.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_5.n_432.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_6.n_405.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_6.n_405.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_7.n_358.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_7.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_8.n_195.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_8.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_9.n_186.CWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_9.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF514-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_0.n_837.CWM.meme motif-alignments-all-vs-all/ZNF514/ZNF514-201-vs-ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_0.n_837.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF514-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_1.n_180.CWM.meme motif-alignments-all-vs-all/ZNF514/ZNF514-201-vs-ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_1.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF514-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_2.n_111.CWM.meme motif-alignments-all-vs-all/ZNF514/ZNF514-201-vs-ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_2.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_0.n_214.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_0.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_1.n_123.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_1.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_2.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_3.n_67.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_3.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_4.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_0.n_2066.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_0.n_2066.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_10.n_442.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_10.n_442.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_11.n_418.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_11.n_418.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_12.n_229.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_12.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_13.n_186.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_13.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_14.n_125.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_14.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_15.n_89.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_15.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_1.n_1493.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_1.n_1493.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_2.n_1091.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_2.n_1091.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_3.n_1046.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_3.n_1046.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_4.n_783.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_4.n_783.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_5.n_758.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_5.n_758.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_6.n_660.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_6.n_660.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_7.n_602.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_7.n_602.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_8.n_565.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_8.n_565.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_9.n_448.CWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_9.n_448.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_0.n_3162.CWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_0.n_3162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_1.n_418.CWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_1.n_418.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_2.n_409.CWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_2.n_409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_3.n_364.CWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_3.n_364.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_4.n_175.CWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_4.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_5.n_118.CWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_5.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_6.n_105.CWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_6.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_7.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_0.n_1582.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_0.n_1582.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_10.n_262.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_10.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_11.n_186.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_11.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_12.n_155.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_12.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_13.n_145.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_13.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_14.n_138.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_14.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_15.n_103.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_15.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_16.n_55.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_16.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_17.n_30.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_17.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_1.n_1372.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_1.n_1372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_2.n_531.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_2.n_531.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_3.n_381.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_3.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_4.n_317.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_4.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_5.n_296.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_5.n_296.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_6.n_285.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_6.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_7.n_278.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_7.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_8.n_276.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_8.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_9.n_269.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_9.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_0.n_443.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_0.n_443.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_10.n_69.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_10.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_12.n_57.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_12.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_13.n_26.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_13.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_14.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_1.n_112.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_1.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_2.n_110.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_2.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_3.n_105.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_3.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_4.n_97.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_4.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_5.n_89.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_5.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_6.n_86.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_6.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_7.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_8.n_75.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_8.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_9.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_0.n_1612.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_0.n_1612.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_10.n_110.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_10.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_11.n_85.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_11.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_12.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_13.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_15.n_43.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_15.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_16.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_17.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_18.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_1.n_1329.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_1.n_1329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_2.n_1091.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_2.n_1091.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_3.n_1001.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_3.n_1001.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_4.n_953.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_4.n_953.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_5.n_277.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_5.n_277.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_6.n_199.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_6.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_7.n_199.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_7.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_8.n_197.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_8.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_9.n_141.CWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_9.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_0.n_306.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_0.n_306.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_10.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_1.n_161.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_1.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_2.n_124.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_2.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_3.n_117.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_3.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_4.n_84.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_4.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_5.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_6.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_7.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_8.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_9.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_0.n_619.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_0.n_619.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_10.n_121.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_10.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_11.n_110.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_11.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_12.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_13.n_89.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_13.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_14.n_81.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_14.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_15.n_67.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_15.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_16.n_61.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_16.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_17.n_60.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_17.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_18.n_58.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_18.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_19.n_57.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_19.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_1.n_555.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_1.n_555.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_20.n_50.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_20.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_2.n_526.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_2.n_526.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_3.n_403.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_3.n_403.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_4.n_374.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_4.n_374.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_5.n_310.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_5.n_310.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_6.n_216.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_6.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_7.n_186.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_7.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_8.n_147.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_8.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_9.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_0.n_4500.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_0.n_4500.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_10.n_61.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_10.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_11.n_40.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_11.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_12.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_13.n_39.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_13.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_14.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_15.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_16.n_29.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_16.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_17.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_18.n_25.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_18.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_19.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_1.n_214.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_1.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_2.n_208.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_2.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_3.n_195.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_3.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_4.n_140.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_4.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_5.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_6.n_105.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_6.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_7.n_90.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_7.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_8.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_0.n_4907.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_0.n_4907.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_10.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_11.n_61.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_11.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_12.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_13.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_14.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_17.n_43.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_17.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_18.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_19.n_27.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_19.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_1.n_684.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_1.n_684.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_20.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_21.n_20.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_21.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_2.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_3.n_175.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_3.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_4.n_153.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_4.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_5.n_112.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_5.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_6.n_104.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_6.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_7.n_94.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_7.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_8.n_83.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_8.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_9.n_63.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_9.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_0.n_1775.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_0.n_1775.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_10.n_148.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_10.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_11.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_12.n_123.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_12.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_13.n_118.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_13.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_14.n_110.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_14.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_15.n_104.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_15.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_16.n_79.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_16.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_17.n_67.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_17.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_18.n_61.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_18.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_19.n_61.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_19.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_1.n_1370.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_1.n_1370.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_20.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_21.n_51.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_21.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_22.n_29.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_22.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_2.n_1304.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_2.n_1304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_3.n_837.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_3.n_837.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_4.n_257.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_4.n_257.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_5.n_239.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_5.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_6.n_226.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_6.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_7.n_216.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_7.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_8.n_199.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_8.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_9.n_180.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_9.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_0.n_4801.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_0.n_4801.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_10.n_191.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_10.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_11.n_174.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_11.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_12.n_162.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_12.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_13.n_105.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_13.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_14.n_96.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_14.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_15.n_84.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_15.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_16.n_83.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_16.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_17.n_82.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_17.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_18.n_69.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_18.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_19.n_34.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_19.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_1.n_2647.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_1.n_2647.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_20.n_28.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_20.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_21.n_23.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_21.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_22.n_23.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_22.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_23.n_21.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_23.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_2.n_980.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_2.n_980.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_3.n_888.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_3.n_888.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_4.n_736.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_4.n_736.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_5.n_568.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_5.n_568.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_6.n_478.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_6.n_478.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_7.n_454.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_7.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_8.n_275.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_8.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_9.n_239.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_9.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_0.n_4500.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_0.n_4500.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_10.n_61.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_10.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_11.n_40.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_11.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_12.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_13.n_39.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_13.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_14.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_15.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_16.n_29.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_16.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_17.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_18.n_25.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_18.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_19.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_1.n_214.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_1.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_2.n_208.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_2.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_3.n_195.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_3.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_4.n_140.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_4.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_5.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_6.n_105.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_6.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_7.n_90.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_7.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_8.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_0.n_4907.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_0.n_4907.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_10.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_11.n_61.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_11.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_12.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_13.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_14.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_17.n_43.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_17.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_18.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_19.n_27.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_19.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_1.n_684.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_1.n_684.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_20.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_21.n_20.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_21.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_2.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_3.n_175.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_3.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_4.n_153.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_4.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_5.n_112.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_5.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_6.n_104.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_6.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_7.n_94.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_7.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_8.n_83.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_8.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_9.n_63.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_9.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_0.n_1775.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_0.n_1775.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_10.n_148.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_10.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_11.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_12.n_123.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_12.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_13.n_118.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_13.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_14.n_110.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_14.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_15.n_104.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_15.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_16.n_79.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_16.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_17.n_67.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_17.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_18.n_61.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_18.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_19.n_61.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_19.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_1.n_1370.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_1.n_1370.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_20.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_21.n_51.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_21.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_22.n_29.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_22.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_2.n_1304.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_2.n_1304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_3.n_837.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_3.n_837.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_4.n_257.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_4.n_257.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_5.n_239.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_5.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_6.n_226.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_6.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_7.n_216.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_7.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_8.n_199.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_8.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_9.n_180.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_9.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_0.n_4801.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_0.n_4801.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_10.n_191.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_10.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_11.n_174.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_11.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_12.n_162.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_12.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_13.n_105.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_13.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_14.n_96.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_14.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_15.n_84.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_15.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_16.n_83.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_16.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_17.n_82.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_17.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_18.n_69.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_18.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_19.n_34.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_19.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_1.n_2647.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_1.n_2647.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_20.n_28.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_20.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_21.n_23.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_21.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_22.n_23.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_22.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_23.n_21.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_23.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_2.n_980.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_2.n_980.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_3.n_888.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_3.n_888.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_4.n_736.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_4.n_736.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_5.n_568.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_5.n_568.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_6.n_478.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_6.n_478.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_7.n_454.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_7.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_8.n_275.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_8.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_9.n_239.CWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_9.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_0.n_5000.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_0.n_5000.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_10.n_226.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_10.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_11.n_218.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_11.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_12.n_187.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_12.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_13.n_172.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_13.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_14.n_142.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_14.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_15.n_135.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_15.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_16.n_109.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_16.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_17.n_105.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_17.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_18.n_86.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_18.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_19.n_62.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_19.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_1.n_4952.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_1.n_4952.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_20.n_57.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_20.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_21.n_56.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_21.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_22.n_51.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_22.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_23.n_44.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_23.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_24.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_25.n_29.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_25.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_26.n_26.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_26.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_27.n_21.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_27.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_2.n_3734.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_2.n_3734.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_3.n_1298.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_3.n_1298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_4.n_753.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_4.n_753.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_5.n_448.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_5.n_448.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_6.n_387.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_6.n_387.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_17.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_1.n_6662.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_1.n_6662.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_3.n_1610.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_3.n_1610.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_4.n_1078.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_4.n_1078.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_5.n_602.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_5.n_602.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_6.n_320.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_6.n_320.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_7.n_237.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_7.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_8.n_222.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_8.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_9.n_117.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_9.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_0.n_8689.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_0.n_8689.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_10.n_112.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_10.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_11.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_1.n_4532.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_1.n_4532.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_2.n_3305.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_2.n_3305.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_3.n_881.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_3.n_881.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_4.n_569.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_4.n_569.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_5.n_196.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_5.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_6.n_164.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_6.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_7.n_141.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_7.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_8.n_132.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_8.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_9.n_126.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_9.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_0.n_5000.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_0.n_5000.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_10.n_226.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_10.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_11.n_218.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_11.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_12.n_187.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_12.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_13.n_172.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_13.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_14.n_142.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_14.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_15.n_135.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_15.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_16.n_109.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_16.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_17.n_105.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_17.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_18.n_86.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_18.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_19.n_62.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_19.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_1.n_4952.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_1.n_4952.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_20.n_57.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_20.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_21.n_56.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_21.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_22.n_51.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_22.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_23.n_44.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_23.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_24.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_25.n_29.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_25.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_26.n_26.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_26.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_27.n_21.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_27.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_2.n_3734.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_2.n_3734.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_3.n_1298.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_3.n_1298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_4.n_753.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_4.n_753.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_5.n_448.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_5.n_448.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_6.n_387.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_6.n_387.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_17.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_1.n_6662.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_1.n_6662.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_3.n_1610.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_3.n_1610.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_4.n_1078.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_4.n_1078.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_5.n_602.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_5.n_602.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_6.n_320.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_6.n_320.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_7.n_237.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_7.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_8.n_222.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_8.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_9.n_117.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_9.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_0.n_8689.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_0.n_8689.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_10.n_112.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_10.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_11.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_1.n_4532.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_1.n_4532.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_2.n_3305.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_2.n_3305.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_3.n_881.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_3.n_881.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_4.n_569.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_4.n_569.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_5.n_196.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_5.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_6.n_164.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_6.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_7.n_141.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_7.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_8.n_132.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_8.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_9.n_126.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_9.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_0.n_5000.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_0.n_5000.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_10.n_226.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_10.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_11.n_218.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_11.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_12.n_187.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_12.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_13.n_172.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_13.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_14.n_142.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_14.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_15.n_135.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_15.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_16.n_109.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_16.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_17.n_105.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_17.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_18.n_86.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_18.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_19.n_62.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_19.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_1.n_4952.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_1.n_4952.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_20.n_57.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_20.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_21.n_56.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_21.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_22.n_51.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_22.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_23.n_44.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_23.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_24.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_25.n_29.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_25.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_26.n_26.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_26.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_27.n_21.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_27.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_2.n_3734.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_2.n_3734.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_3.n_1298.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_3.n_1298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_4.n_753.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_4.n_753.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_5.n_448.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_5.n_448.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_6.n_387.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_6.n_387.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_17.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_1.n_6662.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_1.n_6662.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_3.n_1610.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_3.n_1610.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_4.n_1078.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_4.n_1078.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_5.n_602.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_5.n_602.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_6.n_320.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_6.n_320.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_7.n_237.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_7.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_8.n_222.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_8.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_9.n_117.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_9.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_0.n_8689.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_0.n_8689.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_10.n_112.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_10.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_11.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_1.n_4532.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_1.n_4532.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_2.n_3305.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_2.n_3305.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_3.n_881.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_3.n_881.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_4.n_569.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_4.n_569.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_5.n_196.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_5.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_6.n_164.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_6.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_7.n_141.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_7.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_8.n_132.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_8.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_9.n_126.CWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_9.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_0.n_1360.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_0.n_1360.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_10.n_241.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_10.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_11.n_241.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_11.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_12.n_235.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_12.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_13.n_199.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_13.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_14.n_181.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_14.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_15.n_134.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_15.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_16.n_95.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_16.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_17.n_60.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_17.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_18.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_19.n_33.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_19.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_1.n_1277.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_1.n_1277.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_2.n_911.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_2.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_3.n_610.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_3.n_610.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_4.n_334.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_4.n_334.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_5.n_312.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_5.n_312.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_6.n_281.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_6.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_7.n_278.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_7.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_8.n_257.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_8.n_257.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_9.n_244.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_9.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_0.n_204.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_0.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_10.n_44.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_10.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_11.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_13.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_1.n_126.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_1.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_2.n_114.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_2.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_3.n_101.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_3.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_4.n_93.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_4.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_5.n_92.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_5.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_6.n_70.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_6.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_7.n_60.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_7.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_8.n_59.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_8.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_9.n_45.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_9.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_0.n_1624.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_0.n_1624.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_10.n_147.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_10.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_11.n_115.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_11.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_12.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_13.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_1.n_755.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_1.n_755.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_2.n_621.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_2.n_621.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_3.n_459.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_3.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_4.n_443.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_4.n_443.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_5.n_325.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_5.n_325.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_6.n_277.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_6.n_277.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_7.n_248.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_7.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_8.n_225.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_8.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_9.n_189.CWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_9.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF426-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_0.n_10016.CWM.meme motif-alignments-all-vs-all/ZNF426/ZNF426-201-vs-ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_0.n_10016.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF426-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_1.n_45.CWM.meme motif-alignments-all-vs-all/ZNF426/ZNF426-201-vs-ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_1.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_0.n_291.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_0.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_1.n_240.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_1.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_2.n_185.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_2.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_3.n_161.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_3.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_4.n_103.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_4.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_5.n_72.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_5.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_6.n_65.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_6.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_7.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_0.n_661.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_0.n_661.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_1.n_626.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_1.n_626.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_2.n_137.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_2.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_3.n_120.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_3.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_4.n_112.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_4.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_5.n_89.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_5.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_6.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_7.n_63.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_7.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_8.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_9.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_0.n_3800.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_0.n_3800.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_10.n_196.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_10.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_11.n_181.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_11.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_12.n_169.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_12.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_13.n_103.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_13.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_14.n_103.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_14.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_15.n_101.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_15.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_16.n_86.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_16.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_17.n_86.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_17.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_18.n_83.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_18.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_19.n_68.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_19.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_1.n_3129.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_1.n_3129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_20.n_67.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_20.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_21.n_63.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_21.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_22.n_47.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_22.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_23.n_34.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_23.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_24.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_2.n_1996.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_2.n_1996.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_3.n_1401.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_3.n_1401.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_4.n_672.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_4.n_672.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_5.n_550.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_5.n_550.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_6.n_508.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_6.n_508.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_7.n_410.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_7.n_410.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_8.n_320.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_8.n_320.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_9.n_222.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_9.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_0.n_5773.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_0.n_5773.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_10.n_167.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_10.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_11.n_167.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_11.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_12.n_98.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_12.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_13.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_15.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_1.n_2418.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_1.n_2418.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_2.n_2364.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_2.n_2364.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_3.n_2033.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_3.n_2033.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_4.n_1366.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_4.n_1366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_5.n_508.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_5.n_508.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_6.n_348.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_6.n_348.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_7.n_328.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_7.n_328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_8.n_256.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_8.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_9.n_212.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_9.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_0.n_16528.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_0.n_16528.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_10.n_399.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_10.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_11.n_346.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_11.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_12.n_344.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_12.n_344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_13.n_311.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_13.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_14.n_301.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_14.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_15.n_276.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_15.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_16.n_236.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_16.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_17.n_234.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_17.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_18.n_217.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_18.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_19.n_208.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_19.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_1.n_1242.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_1.n_1242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_20.n_191.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_20.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_21.n_129.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_21.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_22.n_122.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_22.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_23.n_111.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_23.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_24.n_73.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_24.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_25.n_49.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_25.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_26.n_40.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_26.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_27.n_29.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_27.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_2.n_1135.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_2.n_1135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_3.n_905.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_3.n_905.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_4.n_723.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_4.n_723.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_5.n_631.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_5.n_631.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_6.n_626.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_6.n_626.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_7.n_484.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_7.n_484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_8.n_466.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_8.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_9.n_443.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_9.n_443.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_135.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_133.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_131.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_123.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_123.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_15.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_16.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_17.n_82.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_17.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_18.n_68.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_18.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_19.n_63.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_19.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_279.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_279.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_242.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_212.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_173.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_164.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_161.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_0.n_3545.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_0.n_3545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_1.n_1614.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_1.n_1614.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_2.n_1247.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_2.n_1247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_0.n_1526.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_0.n_1526.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_10.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_11.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_12.n_40.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_12.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_13.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_1.n_327.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_1.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_2.n_226.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_2.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_3.n_219.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_3.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_4.n_209.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_4.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_5.n_203.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_5.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_6.n_183.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_6.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_7.n_150.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_7.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_8.n_92.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_8.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_9.n_67.CWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_9.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_0.n_1880.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_0.n_1880.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_1.n_87.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_1.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_2.n_60.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_2.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_0.n_5278.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_0.n_5278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_10.n_227.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_10.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_11.n_227.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_11.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_12.n_217.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_12.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_13.n_185.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_13.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_14.n_167.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_14.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_15.n_160.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_15.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_16.n_143.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_16.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_17.n_107.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_17.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_18.n_91.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_18.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_19.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_1.n_4551.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_1.n_4551.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_20.n_54.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_20.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_21.n_53.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_21.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_22.n_53.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_22.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_23.n_43.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_23.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_24.n_38.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_24.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_25.n_26.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_25.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_26.n_23.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_26.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_2.n_1671.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_2.n_1671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_3.n_1357.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_3.n_1357.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_4.n_856.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_4.n_856.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_5.n_397.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_5.n_397.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_6.n_303.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_6.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_7.n_285.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_7.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_8.n_269.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_8.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_9.n_239.CWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_9.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_0.n_351.CWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_0.n_351.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_1.n_80.CWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_1.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_2.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_3.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_4.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_0.n_1041.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_0.n_1041.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_10.n_107.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_10.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_11.n_96.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_11.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_12.n_86.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_12.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_13.n_76.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_13.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_14.n_65.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_14.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_15.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_16.n_59.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_16.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_17.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_18.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_19.n_34.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_19.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_1.n_616.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_1.n_616.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_20.n_24.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_20.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_2.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_3.n_318.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_3.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_4.n_307.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_4.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_5.n_288.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_5.n_288.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_6.n_281.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_6.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_7.n_228.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_7.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_8.n_174.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_8.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_9.n_119.CWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_9.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_0.n_658.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_0.n_658.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_10.n_56.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_10.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_11.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_12.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_13.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_14.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_15.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_16.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_1.n_145.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_1.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_2.n_130.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_2.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_3.n_123.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_3.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_4.n_115.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_4.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_5.n_100.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_5.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_6.n_95.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_6.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_7.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_8.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_8.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_0.n_3057.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_0.n_3057.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_10.n_134.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_10.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_11.n_108.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_11.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_12.n_55.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_12.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_13.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_13.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_14.n_36.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_14.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_15.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_16.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_1.n_1702.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_1.n_1702.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_2.n_523.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_2.n_523.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_3.n_499.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_3.n_499.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_4.n_432.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_4.n_432.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_5.n_385.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_5.n_385.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_6.n_363.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_6.n_363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_7.n_355.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_7.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_8.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_9.n_163.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_9.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_0.n_658.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_0.n_658.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_10.n_56.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_10.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_11.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_12.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_13.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_14.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_15.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_16.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_1.n_145.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_1.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_2.n_130.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_2.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_3.n_123.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_3.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_4.n_115.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_4.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_5.n_100.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_5.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_6.n_95.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_6.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_7.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_8.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_8.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_0.n_3057.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_0.n_3057.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_10.n_134.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_10.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_11.n_108.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_11.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_12.n_55.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_12.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_13.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_13.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_14.n_36.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_14.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_15.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_16.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_1.n_1702.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_1.n_1702.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_2.n_523.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_2.n_523.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_3.n_499.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_3.n_499.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_4.n_432.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_4.n_432.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_5.n_385.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_5.n_385.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_6.n_363.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_6.n_363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_7.n_355.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_7.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_8.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_9.n_163.CWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_9.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_0.n_5721.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_0.n_5721.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_10.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_11.n_61.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_11.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_12.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_13.n_51.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_13.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_14.n_29.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_14.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_15.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_1.n_2567.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_1.n_2567.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_2.n_1600.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_2.n_1600.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_3.n_1092.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_3.n_1092.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_4.n_846.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_4.n_846.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_5.n_461.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_5.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_6.n_397.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_6.n_397.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_7.n_256.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_7.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_8.n_221.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_8.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_9.n_101.CWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_9.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_0.n_9595.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_0.n_9595.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_10.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_10.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_11.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_12.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_1.n_1672.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_1.n_1672.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_2.n_1165.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_2.n_1165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_3.n_632.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_3.n_632.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_4.n_506.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_4.n_506.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_5.n_346.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_5.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_6.n_333.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_6.n_333.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_7.n_304.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_7.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_8.n_200.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_8.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_9.n_162.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_9.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_0.n_9595.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_0.n_9595.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_10.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_10.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_11.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_12.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_1.n_1672.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_1.n_1672.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_2.n_1165.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_2.n_1165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_3.n_632.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_3.n_632.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_4.n_506.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_4.n_506.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_5.n_346.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_5.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_6.n_333.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_6.n_333.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_7.n_304.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_7.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_8.n_200.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_8.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_9.n_162.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_9.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_0.n_1097.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_0.n_1097.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_10.n_88.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_10.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_11.n_54.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_11.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_12.n_38.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_12.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_1.n_521.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_1.n_521.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_2.n_402.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_2.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_3.n_286.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_3.n_286.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_4.n_261.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_4.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_5.n_260.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_5.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_6.n_248.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_6.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_7.n_232.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_7.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_8.n_182.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_8.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_9.n_168.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_9.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_10.n_201.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_10.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_11.n_169.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_11.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_12.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_13.n_119.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_13.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_14.n_98.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_14.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_15.n_96.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_15.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_16.n_68.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_16.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_17.n_61.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_17.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_18.n_46.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_18.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_1.n_788.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_1.n_788.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_20.n_41.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_20.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_21.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_22.n_25.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_22.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_23.n_24.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_23.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_24.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_25.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_2.n_750.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_2.n_750.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_3.n_746.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_3.n_746.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_4.n_677.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_4.n_677.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_5.n_578.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_5.n_578.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_6.n_512.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_6.n_512.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_7.n_335.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_7.n_335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_8.n_293.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_8.n_293.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_9.n_283.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_9.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_0.n_1097.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_0.n_1097.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_10.n_88.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_10.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_11.n_54.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_11.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_12.n_38.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_12.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_1.n_521.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_1.n_521.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_2.n_402.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_2.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_3.n_286.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_3.n_286.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_4.n_261.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_4.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_5.n_260.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_5.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_6.n_248.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_6.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_7.n_232.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_7.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_8.n_182.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_8.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_9.n_168.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_9.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_10.n_201.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_10.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_11.n_169.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_11.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_12.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_13.n_119.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_13.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_14.n_98.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_14.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_15.n_96.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_15.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_16.n_68.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_16.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_17.n_61.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_17.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_18.n_46.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_18.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_1.n_788.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_1.n_788.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_20.n_41.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_20.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_21.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_22.n_25.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_22.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_23.n_24.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_23.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_24.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_25.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_2.n_750.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_2.n_750.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_3.n_746.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_3.n_746.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_4.n_677.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_4.n_677.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_5.n_578.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_5.n_578.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_6.n_512.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_6.n_512.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_7.n_335.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_7.n_335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_8.n_293.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_8.n_293.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_9.n_283.CWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_9.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_0.n_724.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_0.n_724.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_10.n_78.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_10.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_11.n_66.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_11.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_12.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_13.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_14.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_1.n_132.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_1.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_2.n_116.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_2.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_3.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_4.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_5.n_98.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_5.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_8.n_83.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_8.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_9.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_0.n_724.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_0.n_724.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_10.n_78.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_10.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_11.n_66.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_11.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_12.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_13.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_14.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_1.n_132.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_1.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_2.n_116.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_2.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_3.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_4.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_5.n_98.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_5.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_8.n_83.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_8.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_9.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_0.n_2712.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_0.n_2712.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_10.n_203.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_10.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_11.n_150.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_11.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_12.n_123.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_12.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_13.n_114.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_13.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_14.n_81.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_14.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_15.n_66.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_15.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_16.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_17.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_18.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_1.n_2308.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_1.n_2308.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_2.n_871.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_2.n_871.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_3.n_718.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_3.n_718.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_4.n_447.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_4.n_447.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_5.n_410.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_5.n_410.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_6.n_259.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_6.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_7.n_239.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_7.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_8.n_238.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_8.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_9.n_223.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_9.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_0.n_2320.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_0.n_2320.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_10.n_185.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_10.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_11.n_176.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_11.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_12.n_173.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_12.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_13.n_156.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_13.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_14.n_119.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_14.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_15.n_110.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_15.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_16.n_108.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_16.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_17.n_37.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_17.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_1.n_773.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_1.n_773.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_2.n_455.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_2.n_455.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_3.n_444.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_3.n_444.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_4.n_352.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_4.n_352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_5.n_340.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_5.n_340.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_6.n_330.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_6.n_330.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_7.n_308.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_7.n_308.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_8.n_279.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_8.n_279.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_9.n_203.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_9.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_0.n_224.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_0.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_1.n_105.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_1.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_2.n_75.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_2.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_3.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_4.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_7.n_30.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_7.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_8.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_0.n_615.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_0.n_615.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_10.n_163.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_10.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_11.n_149.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_11.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_12.n_129.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_12.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_13.n_100.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_13.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_14.n_96.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_14.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_15.n_90.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_15.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_16.n_85.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_16.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_17.n_82.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_17.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_18.n_40.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_18.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_19.n_36.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_19.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_1.n_576.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_1.n_576.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_20.n_28.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_20.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_2.n_571.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_2.n_571.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_3.n_446.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_3.n_446.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_4.n_410.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_4.n_410.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_5.n_259.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_5.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_6.n_242.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_6.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_7.n_221.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_7.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_8.n_205.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_8.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_9.n_166.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_9.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_0.n_4734.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_0.n_4734.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_10.n_291.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_10.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_11.n_276.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_11.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_12.n_274.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_12.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_13.n_213.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_13.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_14.n_113.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_14.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_15.n_94.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_15.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_16.n_73.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_16.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_17.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_18.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_19.n_23.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_19.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_1.n_3757.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_1.n_3757.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_20.n_22.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_20.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_2.n_1833.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_2.n_1833.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_3.n_1534.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_3.n_1534.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_4.n_1131.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_4.n_1131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_5.n_744.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_5.n_744.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_6.n_549.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_6.n_549.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_7.n_534.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_7.n_534.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_8.n_368.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_8.n_368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_9.n_294.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_9.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_0.n_5255.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_0.n_5255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_10.n_132.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_10.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_11.n_86.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_11.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_12.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_13.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_1.n_3333.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_1.n_3333.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_2.n_1266.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_2.n_1266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_3.n_506.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_3.n_506.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_4.n_473.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_4.n_473.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_5.n_279.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_5.n_279.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_6.n_265.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_6.n_265.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_7.n_230.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_7.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_8.n_179.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_8.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_9.n_150.CWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_9.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_0.n_490.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_0.n_490.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_10.n_95.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_10.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_11.n_92.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_11.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_12.n_88.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_12.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_13.n_84.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_13.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_14.n_83.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_14.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_15.n_82.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_15.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_16.n_80.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_16.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_17.n_79.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_17.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_18.n_72.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_18.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_19.n_63.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_19.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_1.n_298.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_1.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_20.n_36.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_20.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_21.n_24.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_21.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_22.n_23.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_22.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_23.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_2.n_208.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_2.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_3.n_203.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_3.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_4.n_202.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_4.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_5.n_144.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_5.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_6.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_7.n_123.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_7.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_8.n_99.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_8.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_9.n_95.CWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_9.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_0.n_2205.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_0.n_2205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_10.n_261.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_10.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_11.n_247.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_11.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_12.n_234.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_12.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_13.n_232.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_13.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_14.n_141.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_14.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_15.n_70.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_15.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_16.n_61.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_16.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_17.n_59.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_17.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_18.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_1.n_1477.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_1.n_1477.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_2.n_1127.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_2.n_1127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_3.n_793.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_3.n_793.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_4.n_674.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_4.n_674.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_5.n_412.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_5.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_6.n_394.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_6.n_394.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_7.n_370.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_7.n_370.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_8.n_335.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_8.n_335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_9.n_280.CWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_9.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_0.n_30.CWM.meme motif-alignments-all-vs-all/ZNF496/ZNF496-201-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_0.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all/ZNF496/ZNF496-201-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_1.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZNF496/ZNF496-201-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_2.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF496/ZNF496-201-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_0.n_9864.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_0.n_9864.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_10.n_107.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_10.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_11.n_93.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_11.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_12.n_85.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_12.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_13.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_14.n_49.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_14.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_15.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_1.n_1874.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_1.n_1874.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_2.n_587.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_2.n_587.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_3.n_581.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_3.n_581.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_4.n_337.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_4.n_337.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_5.n_314.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_5.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_7.n_188.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_7.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_8.n_184.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_8.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_9.n_113.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_9.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_0.n_2066.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_0.n_2066.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_10.n_136.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_10.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_11.n_110.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_11.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_12.n_103.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_12.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_13.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_14.n_61.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_14.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_15.n_43.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_15.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_17.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_1.n_1474.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_1.n_1474.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_2.n_1456.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_2.n_1456.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_3.n_484.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_3.n_484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_4.n_377.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_4.n_377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_5.n_356.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_5.n_356.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_6.n_348.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_6.n_348.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_7.n_269.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_7.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_8.n_231.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_8.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_9.n_178.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_9.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_0.n_679.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_0.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_1.n_629.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_1.n_629.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_2.n_182.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_2.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_3.n_149.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_3.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_4.n_112.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_4.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_5.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_44.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_13.n_313.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_13.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_15.n_283.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_15.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_1.n_554.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_1.n_554.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_20.n_220.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_20.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_21.n_219.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_21.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_22.n_205.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_22.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_23.n_179.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_23.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_24.n_167.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_24.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_25.n_166.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_25.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_3.n_468.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_3.n_468.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_40.n_49.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_40.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_44.n_26.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_44.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_45.n_25.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_45.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_4.n_457.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_4.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_5.n_433.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_5.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_6.n_417.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_6.n_417.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_7.n_409.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_7.n_409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_8.n_361.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_8.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_9.n_355.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_9.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_0.n_1566.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_0.n_1566.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_1.n_127.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_1.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_2.n_85.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_2.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_3.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_4.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_5.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_6.n_48.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_6.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_7.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_8.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_0.n_984.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_0.n_984.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_10.n_115.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_10.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_11.n_112.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_11.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_12.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_13.n_65.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_13.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_14.n_61.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_14.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_15.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_16.n_41.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_16.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_17.n_36.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_17.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_18.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_19.n_34.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_19.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_1.n_817.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_1.n_817.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_20.n_34.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_20.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_21.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_22.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_2.n_431.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_2.n_431.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_3.n_275.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_3.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_4.n_268.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_4.n_268.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_5.n_257.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_5.n_257.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_6.n_233.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_6.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_7.n_233.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_7.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_8.n_181.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_8.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_9.n_176.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_9.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_0.n_275.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_0.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_10.n_34.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_10.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_11.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_12.n_33.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_12.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_1.n_126.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_1.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_2.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_3.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_5.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_6.n_56.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_6.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_7.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_8.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_9.n_35.CWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_9.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_0.n_1393.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_0.n_1393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_1.n_188.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_1.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_2.n_72.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_2.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_3.n_68.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_3.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_4.n_41.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_4.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_5.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_6.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_0.n_279.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_0.n_279.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_10.n_66.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_10.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_11.n_49.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_11.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_12.n_49.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_12.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_13.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_14.n_29.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_14.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_15.n_27.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_15.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_16.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_17.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_18.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_1.n_248.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_1.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_2.n_198.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_2.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_3.n_140.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_3.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_4.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_5.n_86.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_5.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_6.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_7.n_76.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_7.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_8.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_9.n_71.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_9.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_0.n_9700.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_0.n_9700.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_1.n_1636.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_1.n_1636.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_2.n_1403.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_2.n_1403.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_3.n_1007.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_3.n_1007.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_4.n_466.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_4.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_5.n_132.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_5.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_6.n_67.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_6.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_8.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_0.n_123.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_0.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_1.n_116.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_1.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_2.n_97.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_2.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_3.n_90.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_3.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_6.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_0.n_9700.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_0.n_9700.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_1.n_1636.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_1.n_1636.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_2.n_1403.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_2.n_1403.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_3.n_1007.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_3.n_1007.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_4.n_466.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_4.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_5.n_132.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_5.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_6.n_67.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_6.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_8.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_0.n_123.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_0.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_1.n_116.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_1.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_2.n_97.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_2.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_3.n_90.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_3.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_6.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_0.n_4249.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_0.n_4249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_10.n_379.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_10.n_379.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_11.n_360.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_11.n_360.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_12.n_301.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_12.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_13.n_234.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_13.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_14.n_201.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_14.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_15.n_146.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_15.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_16.n_125.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_16.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_17.n_71.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_17.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_18.n_49.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_18.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_19.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_1.n_3027.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_1.n_3027.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_20.n_24.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_20.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_21.n_23.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_21.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_2.n_2126.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_2.n_2126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_3.n_1972.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_3.n_1972.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_4.n_1915.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_4.n_1915.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_5.n_1046.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_5.n_1046.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_6.n_756.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_6.n_756.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_7.n_551.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_7.n_551.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_8.n_419.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_8.n_419.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_9.n_411.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_9.n_411.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_0.n_1721.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_0.n_1721.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_11.n_40.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_11.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_1.n_840.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_1.n_840.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_2.n_228.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_2.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_3.n_159.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_3.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_4.n_153.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_4.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_5.n_111.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_5.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_6.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_8.n_58.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_8.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_9.n_48.CWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_9.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_10.n_338.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_10.n_338.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_11.n_272.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_11.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_12.n_228.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_12.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_13.n_225.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_13.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_14.n_219.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_14.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_15.n_209.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_15.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_16.n_203.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_16.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_17.n_182.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_17.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_18.n_124.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_18.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_19.n_66.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_19.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_1.n_2211.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_1.n_2211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_2.n_1051.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_2.n_1051.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_3.n_893.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_3.n_893.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_4.n_753.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_4.n_753.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_5.n_518.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_5.n_518.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_6.n_418.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_6.n_418.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_7.n_369.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_7.n_369.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_8.n_355.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_8.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_9.n_355.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_9.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_0.n_139.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_0.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_10.n_40.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_10.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_11.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_12.n_37.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_12.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_13.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_14.n_28.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_14.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_15.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_15.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_1.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_2.n_100.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_2.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_3.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_4.n_90.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_4.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_5.n_90.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_5.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_6.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_7.n_70.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_7.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_8.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_9.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_10.n_338.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_10.n_338.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_11.n_272.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_11.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_12.n_228.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_12.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_13.n_225.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_13.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_14.n_219.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_14.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_15.n_209.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_15.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_16.n_203.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_16.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_17.n_182.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_17.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_18.n_124.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_18.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_19.n_66.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_19.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_1.n_2211.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_1.n_2211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_2.n_1051.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_2.n_1051.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_3.n_893.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_3.n_893.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_4.n_753.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_4.n_753.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_5.n_518.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_5.n_518.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_6.n_418.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_6.n_418.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_7.n_369.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_7.n_369.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_8.n_355.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_8.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_9.n_355.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_9.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_0.n_139.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_0.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_10.n_40.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_10.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_11.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_12.n_37.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_12.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_13.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_14.n_28.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_14.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_15.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_15.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_1.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_2.n_100.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_2.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_3.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_4.n_90.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_4.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_5.n_90.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_5.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_6.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_7.n_70.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_7.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_8.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_9.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_0.n_22088.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_0.n_22088.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_1.n_434.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_1.n_434.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_2.n_393.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_2.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_3.n_336.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_3.n_336.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_4.n_225.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_4.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_5.n_123.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_5.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_6.n_76.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_6.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_7.n_60.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_7.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_0.n_1978.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_0.n_1978.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_10.n_252.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_10.n_252.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_11.n_230.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_11.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_12.n_219.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_12.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_13.n_191.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_13.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_14.n_185.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_14.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_15.n_183.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_15.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_16.n_182.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_16.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_17.n_175.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_17.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_18.n_169.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_18.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_19.n_160.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_19.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_1.n_1511.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_1.n_1511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_20.n_156.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_20.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_21.n_153.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_21.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_22.n_152.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_22.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_23.n_151.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_23.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_24.n_151.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_24.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_25.n_143.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_25.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_26.n_137.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_26.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_27.n_136.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_27.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_28.n_135.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_28.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_29.n_131.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_29.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_2.n_1410.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_2.n_1410.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_30.n_131.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_30.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_31.n_130.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_31.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_32.n_128.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_32.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_33.n_128.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_33.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_34.n_127.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_34.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_35.n_127.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_35.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_36.n_126.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_36.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_37.n_125.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_37.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_38.n_116.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_38.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_39.n_113.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_39.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_3.n_1207.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_3.n_1207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_40.n_111.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_40.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_41.n_110.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_41.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_42.n_110.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_42.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_43.n_109.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_43.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_44.n_109.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_44.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_45.n_106.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_45.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_46.n_106.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_46.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_47.n_106.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_47.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_48.n_105.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_48.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_49.n_105.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_49.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_4.n_1150.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_4.n_1150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_50.n_105.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_50.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_51.n_102.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_51.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_52.n_100.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_52.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_53.n_98.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_53.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_54.n_95.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_54.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_55.n_95.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_55.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_56.n_86.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_56.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_57.n_84.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_57.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_58.n_81.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_58.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_59.n_79.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_59.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_5.n_1108.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_5.n_1108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_60.n_77.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_60.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_61.n_70.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_61.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_62.n_70.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_62.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_63.n_65.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_63.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_64.n_65.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_64.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_65.n_64.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_65.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_66.n_58.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_66.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_67.n_57.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_67.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_68.n_56.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_68.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_69.n_54.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_69.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_6.n_727.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_6.n_727.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_70.n_47.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_70.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_71.n_46.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_71.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_0.n_15899.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_0.n_15899.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_10.n_184.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_10.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_11.n_176.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_11.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_12.n_131.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_12.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_13.n_117.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_13.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_14.n_114.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_14.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_15.n_110.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_15.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_16.n_72.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_16.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_17.n_71.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_17.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_18.n_66.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_18.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_19.n_39.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_19.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_1.n_1231.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_1.n_1231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_20.n_28.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_20.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_2.n_1150.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_2.n_1150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_3.n_744.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_3.n_744.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_4.n_387.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_4.n_387.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_5.n_331.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_5.n_331.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_6.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_7.n_225.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_7.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_8.n_196.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_8.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_9.n_189.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_9.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_0.n_18117.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_0.n_18117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_10.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_11.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_12.n_30.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_12.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_1.n_661.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_1.n_661.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_2.n_577.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_2.n_577.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_3.n_359.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_3.n_359.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_4.n_193.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_4.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_5.n_145.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_5.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_6.n_125.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_6.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_7.n_78.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_7.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_8.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_9.n_44.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_9.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_0.n_22587.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_0.n_22587.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_10.n_158.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_10.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_11.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_12.n_114.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_12.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_13.n_106.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_13.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_14.n_95.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_14.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_15.n_91.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_15.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_16.n_82.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_16.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_17.n_50.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_17.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_18.n_40.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_18.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_19.n_37.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_19.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_1.n_673.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_1.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_20.n_35.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_20.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_21.n_29.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_21.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_22.n_25.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_22.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_23.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_2.n_540.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_2.n_540.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_3.n_494.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_3.n_494.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_4.n_357.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_4.n_357.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_5.n_233.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_5.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_6.n_199.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_6.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_7.n_194.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_7.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_8.n_184.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_8.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_9.n_183.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_9.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_0.n_2492.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_0.n_2492.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_10.n_66.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_10.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_11.n_28.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_11.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_1.n_654.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_1.n_654.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_2.n_382.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_2.n_382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_3.n_319.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_3.n_319.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_5.n_201.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_5.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_6.n_138.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_6.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_7.n_135.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_7.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_8.n_123.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_8.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_9.n_78.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_9.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_0.n_465.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_0.n_465.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_10.n_150.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_10.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_11.n_148.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_11.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_12.n_118.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_12.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_13.n_84.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_13.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_14.n_36.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_14.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_15.n_35.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_15.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_16.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_1.n_335.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_1.n_335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_2.n_308.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_2.n_308.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_3.n_239.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_3.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_4.n_211.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_4.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_5.n_208.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_5.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_6.n_196.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_6.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_7.n_188.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_7.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_8.n_162.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_8.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_9.n_158.CWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_9.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_0.n_7289.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_0.n_7289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_10.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_1.n_2634.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_1.n_2634.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_2.n_2158.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_2.n_2158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_3.n_1455.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_3.n_1455.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_4.n_761.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_4.n_761.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_5.n_713.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_5.n_713.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_6.n_517.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_6.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_7.n_394.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_7.n_394.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_8.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_9.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_10.n_252.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_10.n_252.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_11.n_249.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_11.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_12.n_206.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_12.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_13.n_201.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_13.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_14.n_183.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_14.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_15.n_153.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_15.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_16.n_142.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_16.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_17.n_128.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_17.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_18.n_112.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_18.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_19.n_81.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_19.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_1.n_871.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_1.n_871.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_20.n_74.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_20.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_21.n_71.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_21.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_22.n_22.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_22.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_2.n_746.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_2.n_746.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_3.n_572.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_3.n_572.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_4.n_451.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_4.n_451.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_5.n_400.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_5.n_400.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_6.n_399.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_6.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_7.n_377.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_7.n_377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_8.n_371.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_8.n_371.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_9.n_278.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_9.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_0.n_3980.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_0.n_3980.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_10.n_49.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_10.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_11.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_12.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_13.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_14.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_1.n_1335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_2.n_1119.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_2.n_1119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_3.n_306.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_3.n_306.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_4.n_283.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_4.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_5.n_237.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_5.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_6.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_7.n_85.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_7.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_8.n_79.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_8.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_9.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_0.n_3053.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_0.n_3053.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_10.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_11.n_146.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_11.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_12.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_13.n_89.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_13.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_14.n_88.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_14.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_15.n_81.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_15.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_16.n_59.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_16.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_17.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_18.n_26.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_18.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_19.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_1.n_2638.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_1.n_2638.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_2.n_2543.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_2.n_2543.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_3.n_469.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_3.n_469.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_4.n_323.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_4.n_323.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_5.n_289.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_5.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_6.n_276.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_6.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_7.n_262.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_7.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_8.n_219.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_8.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_9.n_173.CWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_9.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_10.n_208.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_10.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_11.n_163.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_11.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_12.n_138.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_12.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_13.n_128.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_13.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_14.n_97.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_14.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_16.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_17.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_1.n_3594.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_1.n_3594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_2.n_2076.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_2.n_2076.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_3.n_1938.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_3.n_1938.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_4.n_1634.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_4.n_1634.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_5.n_1580.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_5.n_1580.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_6.n_1418.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_6.n_1418.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_7.n_973.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_7.n_973.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_8.n_870.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_8.n_870.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_9.n_329.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_9.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_0.n_5280.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_0.n_5280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_10.n_191.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_10.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_11.n_128.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_11.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_12.n_90.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_12.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_13.n_60.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_13.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_14.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_15.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_16.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_17.n_24.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_17.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_18.n_23.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_18.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_19.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_1.n_1062.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_1.n_1062.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_2.n_939.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_2.n_939.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_3.n_933.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_3.n_933.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_4.n_756.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_4.n_756.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_5.n_668.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_5.n_668.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_6.n_668.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_6.n_668.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_7.n_393.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_7.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_8.n_341.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_8.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_9.n_270.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_9.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_10.n_208.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_10.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_11.n_163.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_11.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_12.n_138.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_12.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_13.n_128.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_13.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_14.n_97.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_14.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_16.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_17.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_1.n_3594.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_1.n_3594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_2.n_2076.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_2.n_2076.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_3.n_1938.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_3.n_1938.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_4.n_1634.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_4.n_1634.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_5.n_1580.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_5.n_1580.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_6.n_1418.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_6.n_1418.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_7.n_973.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_7.n_973.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_8.n_870.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_8.n_870.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_9.n_329.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_9.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_0.n_5280.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_0.n_5280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_10.n_191.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_10.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_11.n_128.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_11.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_12.n_90.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_12.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_13.n_60.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_13.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_14.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_15.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_16.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_17.n_24.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_17.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_18.n_23.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_18.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_19.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_1.n_1062.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_1.n_1062.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_2.n_939.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_2.n_939.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_3.n_933.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_3.n_933.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_4.n_756.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_4.n_756.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_5.n_668.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_5.n_668.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_6.n_668.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_6.n_668.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_7.n_393.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_7.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_8.n_341.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_8.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_9.n_270.CWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_9.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_0.n_6437.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_0.n_6437.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_10.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_1.n_3095.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_1.n_3095.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_2.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_3.n_286.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_3.n_286.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_4.n_271.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_4.n_271.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_5.n_181.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_5.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_6.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_7.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_8.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_9.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_0.n_269.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_0.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_10.n_81.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_10.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_11.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_12.n_58.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_12.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_13.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_14.n_54.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_14.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_15.n_51.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_15.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_16.n_51.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_16.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_17.n_37.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_17.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_18.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_19.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_1.n_120.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_1.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_20.n_23.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_20.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_2.n_115.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_2.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_3.n_114.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_3.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_4.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_5.n_107.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_5.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_6.n_99.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_6.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_7.n_90.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_7.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_8.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_9.n_83.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_9.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_0.n_237.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_0.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_1.n_188.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_1.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_2.n_151.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_2.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_3.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_4.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_5.n_49.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_5.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_6.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_7.n_33.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_7.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_9.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_0.n_3696.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_0.n_3696.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_10.n_379.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_10.n_379.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_11.n_265.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_11.n_265.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_12.n_180.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_12.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_13.n_62.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_13.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_14.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_15.n_48.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_15.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_16.n_39.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_16.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_17.n_35.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_17.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_18.n_34.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_18.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_19.n_30.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_19.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_1.n_2996.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_1.n_2996.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_20.n_26.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_20.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_2.n_2377.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_2.n_2377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_3.n_1151.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_3.n_1151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_4.n_1138.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_4.n_1138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_5.n_1018.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_5.n_1018.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_6.n_710.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_6.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_7.n_690.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_7.n_690.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_8.n_399.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_8.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_9.n_386.CWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_9.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_0.n_11151.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_0.n_11151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_1.n_2479.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_1.n_2479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_2.n_2203.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_2.n_2203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_3.n_1850.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_3.n_1850.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_4.n_1701.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_4.n_1701.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_5.n_542.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_5.n_542.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_6.n_388.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_6.n_388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_7.n_100.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_7.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_8.n_51.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_8.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_9.n_45.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_9.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_0.n_641.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_0.n_641.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_10.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_11.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_12.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_13.n_36.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_13.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_14.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_1.n_133.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_1.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_2.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_3.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_4.n_76.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_4.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_5.n_68.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_5.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_6.n_62.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_6.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_8.n_48.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_8.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_9.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_0.n_566.CWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_0.n_566.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_1.n_355.CWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_1.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_2.n_203.CWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_2.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_3.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_4.n_50.CWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_4.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_0.n_1701.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_0.n_1701.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_1.n_495.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_1.n_495.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_2.n_440.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_2.n_440.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_3.n_308.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_3.n_308.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_4.n_209.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_4.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_5.n_107.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_5.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_6.n_67.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_6.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_7.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_8.n_44.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_8.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_0.n_1732.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_0.n_1732.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_10.n_309.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_10.n_309.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_11.n_251.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_11.n_251.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_12.n_210.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_12.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_13.n_148.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_13.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_14.n_114.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_14.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_15.n_103.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_15.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_16.n_68.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_16.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_17.n_62.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_17.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_18.n_46.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_18.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_19.n_43.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_19.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_1.n_1510.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_1.n_1510.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_20.n_38.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_20.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_21.n_33.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_21.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_22.n_21.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_22.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_23.n_20.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_23.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_2.n_1340.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_2.n_1340.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_3.n_1104.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_3.n_1104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_4.n_715.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_4.n_715.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_5.n_637.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_5.n_637.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_6.n_621.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_6.n_621.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_7.n_504.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_7.n_504.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_8.n_457.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_8.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_9.n_380.CWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_9.n_380.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_0.n_1155.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_0.n_1155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_10.n_227.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_10.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_11.n_155.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_11.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_12.n_114.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_12.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_13.n_110.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_13.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_14.n_81.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_14.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_15.n_78.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_15.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_16.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_1.n_1115.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_1.n_1115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_2.n_398.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_2.n_398.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_3.n_389.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_3.n_389.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_4.n_377.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_4.n_377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_5.n_328.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_5.n_328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_6.n_303.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_6.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_7.n_276.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_7.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_8.n_229.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_8.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_9.n_228.CWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_9.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_0.n_1805.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_0.n_1805.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_10.n_261.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_10.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_11.n_228.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_11.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_12.n_183.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_12.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_13.n_182.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_13.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_14.n_175.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_14.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_15.n_165.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_15.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_16.n_109.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_16.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_17.n_87.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_17.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_18.n_85.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_18.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_19.n_80.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_19.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_1.n_1751.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_1.n_1751.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_20.n_72.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_20.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_21.n_52.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_21.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_22.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_23.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_2.n_1198.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_2.n_1198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_3.n_479.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_3.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_4.n_447.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_4.n_447.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_5.n_399.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_5.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_6.n_383.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_6.n_383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_7.n_331.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_7.n_331.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_8.n_294.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_8.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_9.n_270.CWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_9.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_10.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_11.n_28.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_11.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_12.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_1.n_2196.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_1.n_2196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_2.n_1778.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_2.n_1778.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_3.n_1570.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_3.n_1570.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_4.n_1063.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_4.n_1063.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_5.n_856.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_5.n_856.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_6.n_779.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_6.n_779.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_7.n_143.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_7.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_8.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_9.n_48.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_9.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_10.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_11.n_28.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_11.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_12.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_1.n_2196.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_1.n_2196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_2.n_1778.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_2.n_1778.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_3.n_1570.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_3.n_1570.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_4.n_1063.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_4.n_1063.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_5.n_856.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_5.n_856.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_6.n_779.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_6.n_779.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_7.n_143.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_7.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_8.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_9.n_48.CWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_9.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_0.n_1228.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_0.n_1228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_10.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_11.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_12.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_1.n_1194.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_1.n_1194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_2.n_965.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_2.n_965.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_3.n_791.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_3.n_791.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_4.n_157.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_4.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_5.n_154.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_5.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_6.n_122.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_6.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_7.n_74.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_7.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_8.n_62.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_8.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_9.n_58.CWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_9.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_0.n_8846.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_0.n_8846.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_10.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_1.n_7397.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_1.n_7397.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_2.n_1127.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_2.n_1127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_3.n_635.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_3.n_635.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_4.n_246.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_4.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_5.n_164.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_5.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_6.n_144.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_6.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_7.n_119.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_7.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_8.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_9.n_75.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_9.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_0.n_2271.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_0.n_2271.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_1.n_443.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_1.n_443.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_2.n_159.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_2.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_3.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_4.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_5.n_124.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_5.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_6.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_7.n_97.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_7.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_8.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_14.n_39.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_14.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_152.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_103.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_6.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_7.n_66.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_7.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_8.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_56.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_0.n_925.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_0.n_925.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_10.n_37.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_10.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_1.n_255.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_1.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_2.n_252.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_2.n_252.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_3.n_209.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_3.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_4.n_144.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_4.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_5.n_122.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_5.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_6.n_119.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_6.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_7.n_93.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_7.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_8.n_64.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_8.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_9.n_40.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_9.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_0.n_1028.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_0.n_1028.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_1.n_963.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_1.n_963.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_2.n_219.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_2.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_3.n_121.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_3.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_4.n_98.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_4.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_5.n_86.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_5.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_6.n_83.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_6.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_7.n_78.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_7.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_8.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_9.n_45.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_9.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_0.n_2478.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_0.n_2478.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_10.n_231.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_10.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_11.n_194.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_11.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_12.n_126.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_12.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_13.n_104.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_13.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_14.n_85.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_14.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_15.n_55.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_15.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_1.n_1020.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_1.n_1020.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_2.n_880.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_2.n_880.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_3.n_510.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_3.n_510.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_4.n_452.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_4.n_452.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_5.n_432.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_5.n_432.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_6.n_335.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_6.n_335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_7.n_306.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_7.n_306.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_8.n_272.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_8.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_9.n_269.CWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_9.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_0.n_99.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_0.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_10.n_37.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_10.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_1.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_2.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_3.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_4.n_55.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_4.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_5.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_6.n_48.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_6.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_7.n_47.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_7.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_8.n_43.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_8.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_9.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_0.n_520.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_0.n_520.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_11.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_1.n_206.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_1.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_2.n_179.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_2.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_3.n_134.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_3.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_4.n_69.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_4.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_6.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_7.n_48.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_7.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_8.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_9.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_0.n_15888.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_0.n_15888.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_1.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_2.n_71.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_2.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_3.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_4.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_5.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_7.n_26.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_7.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_8.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_0.n_567.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_0.n_567.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_10.n_186.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_10.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_11.n_179.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_11.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_12.n_176.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_12.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_13.n_166.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_13.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_14.n_159.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_14.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_15.n_159.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_15.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_16.n_141.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_16.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_17.n_132.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_17.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_18.n_128.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_18.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_19.n_121.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_19.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_1.n_566.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_1.n_566.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_20.n_118.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_20.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_21.n_77.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_21.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_22.n_67.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_22.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_23.n_58.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_23.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_24.n_35.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_24.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_2.n_553.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_2.n_553.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_3.n_442.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_3.n_442.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_4.n_352.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_4.n_352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_5.n_294.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_5.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_6.n_252.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_6.n_252.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_7.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_8.n_205.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_8.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_9.n_197.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_9.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_0.n_567.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_0.n_567.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_10.n_186.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_10.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_11.n_179.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_11.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_12.n_176.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_12.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_13.n_166.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_13.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_14.n_159.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_14.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_15.n_159.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_15.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_16.n_141.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_16.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_17.n_132.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_17.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_18.n_128.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_18.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_19.n_121.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_19.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_1.n_566.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_1.n_566.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_20.n_118.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_20.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_21.n_77.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_21.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_22.n_67.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_22.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_23.n_58.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_23.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_24.n_35.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_24.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_2.n_553.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_2.n_553.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_3.n_442.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_3.n_442.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_4.n_352.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_4.n_352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_5.n_294.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_5.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_6.n_252.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_6.n_252.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_7.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_8.n_205.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_8.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_9.n_197.CWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_9.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_11.n_48.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_11.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_12.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_13.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_14.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_0.n_4053.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_0.n_4053.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_10.n_348.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_10.n_348.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_11.n_246.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_11.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_12.n_206.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_12.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_13.n_203.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_13.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_14.n_146.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_14.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_15.n_129.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_15.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_16.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_17.n_39.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_17.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_1.n_2390.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_1.n_2390.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_2.n_1588.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_2.n_1588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_3.n_1275.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_3.n_1275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_4.n_1083.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_4.n_1083.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_5.n_712.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_5.n_712.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_6.n_646.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_6.n_646.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_7.n_388.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_7.n_388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_8.n_383.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_8.n_383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_9.n_380.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_9.n_380.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_0.n_3456.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_0.n_3456.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_1.n_706.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_1.n_706.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_2.n_706.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_2.n_706.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_3.n_388.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_3.n_388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_4.n_199.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_4.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_5.n_47.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_5.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_7.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_0.n_150.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_0.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_10.n_39.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_10.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_11.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_14.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_15.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_1.n_86.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_1.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_2.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_3.n_64.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_3.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_4.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_5.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_6.n_56.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_6.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_7.n_48.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_7.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_8.n_44.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_8.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_9.n_40.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_9.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_0.n_17315.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_0.n_17315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_10.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_11.n_27.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_11.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_12.n_27.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_12.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_1.n_3111.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_1.n_3111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_2.n_2525.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_2.n_2525.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_3.n_986.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_3.n_986.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_4.n_186.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_4.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_5.n_175.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_5.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_6.n_143.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_6.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_7.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_8.n_113.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_8.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_9.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_0.n_14917.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_0.n_14917.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_10.n_168.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_10.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_11.n_150.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_11.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_12.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_13.n_112.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_13.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_14.n_58.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_14.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_15.n_43.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_15.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_1.n_4092.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_1.n_4092.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_2.n_1877.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_2.n_1877.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_3.n_1708.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_3.n_1708.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_4.n_538.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_4.n_538.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_5.n_398.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_5.n_398.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_6.n_369.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_6.n_369.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_7.n_313.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_7.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_8.n_248.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_8.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_9.n_197.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_9.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_0.n_2603.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_0.n_2603.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_1.n_708.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_1.n_708.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_2.n_674.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_2.n_674.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_3.n_355.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_3.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_4.n_273.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_4.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_5.n_168.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_5.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_6.n_90.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_6.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_7.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_8.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_0.n_9508.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_0.n_9508.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_10.n_136.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_10.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_11.n_91.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_11.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_12.n_90.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_12.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_13.n_67.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_13.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_14.n_62.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_14.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_15.n_52.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_15.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_16.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_17.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_1.n_1815.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_1.n_1815.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_2.n_647.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_2.n_647.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_3.n_560.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_3.n_560.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_4.n_344.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_4.n_344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_5.n_244.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_5.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_6.n_203.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_6.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_7.n_196.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_7.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_8.n_195.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_8.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_9.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_0.n_3644.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_0.n_3644.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_10.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_11.n_31.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_11.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_12.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_13.n_26.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_13.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_14.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_15.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_1.n_1389.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_1.n_1389.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_2.n_192.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_2.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_3.n_109.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_3.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_4.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_5.n_85.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_5.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_6.n_83.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_6.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_7.n_64.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_7.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_8.n_53.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_8.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_9.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HEK336-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HEK336-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_1.n_804.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_1.n_804.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_2.n_320.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_2.n_320.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_3.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_4.n_107.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_4.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_5.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_6.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HEK336-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HEK336-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_1.n_804.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_1.n_804.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_2.n_320.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_2.n_320.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_3.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_4.n_107.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_4.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_5.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_6.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP62-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_0.n_365.CWM.meme motif-alignments-all-vs-all/ZFP62/ZFP62-201-vs-ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_0.n_365.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP62-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_1.n_111.CWM.meme motif-alignments-all-vs-all/ZFP62/ZFP62-201-vs-ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_1.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP62-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_2.n_91.CWM.meme motif-alignments-all-vs-all/ZFP62/ZFP62-201-vs-ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_2.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP62-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all/ZFP62/ZFP62-201-vs-ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_3.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP62-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all/ZFP62/ZFP62-201-vs-ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_4.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP62-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_5.n_71.CWM.meme motif-alignments-all-vs-all/ZFP62/ZFP62-201-vs-ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_5.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP62-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_6.n_70.CWM.meme motif-alignments-all-vs-all/ZFP62/ZFP62-201-vs-ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_6.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP62-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all/ZFP62/ZFP62-201-vs-ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_7.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_8.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_0.n_1234.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_0.n_1234.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_10.n_232.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_10.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_11.n_228.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_11.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_12.n_161.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_12.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_13.n_152.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_13.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_14.n_132.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_14.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_15.n_127.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_15.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_16.n_126.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_16.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_17.n_81.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_17.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_18.n_68.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_18.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_19.n_67.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_19.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_1.n_720.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_1.n_720.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_2.n_643.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_2.n_643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_3.n_514.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_3.n_514.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_4.n_492.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_4.n_492.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_5.n_444.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_5.n_444.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_6.n_348.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_6.n_348.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_7.n_263.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_7.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_8.n_259.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_8.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_9.n_236.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_9.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_0.n_17014.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_0.n_17014.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_10.n_91.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_10.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_11.n_80.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_11.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_12.n_77.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_12.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_13.n_68.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_13.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_14.n_68.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_14.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_15.n_60.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_15.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_16.n_39.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_16.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_17.n_31.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_17.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_18.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_19.n_23.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_19.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_1.n_1133.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_1.n_1133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_2.n_686.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_2.n_686.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_3.n_395.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_3.n_395.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_4.n_371.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_4.n_371.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_5.n_341.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_5.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_6.n_289.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_6.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_7.n_284.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_7.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_8.n_238.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_8.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_9.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_0.n_2181.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_0.n_2181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_10.n_128.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_10.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_11.n_101.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_11.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_12.n_100.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_12.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_13.n_77.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_13.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_14.n_76.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_14.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_15.n_66.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_15.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_16.n_57.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_16.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_17.n_48.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_17.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_18.n_47.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_18.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_19.n_43.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_19.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_1.n_689.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_1.n_689.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_20.n_34.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_20.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_21.n_29.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_21.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_22.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_23.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_24.n_27.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_24.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_25.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_26.n_24.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_26.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_27.n_24.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_27.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_2.n_392.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_2.n_392.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_3.n_361.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_3.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_4.n_203.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_4.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_5.n_181.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_5.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_6.n_174.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_6.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_7.n_162.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_7.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_8.n_158.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_8.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_9.n_155.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_9.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_0.n_2841.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_0.n_2841.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_10.n_193.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_10.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_11.n_177.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_11.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_12.n_155.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_12.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_13.n_112.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_13.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_14.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_15.n_93.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_15.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_16.n_89.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_16.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_17.n_86.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_17.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_18.n_71.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_18.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_19.n_68.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_19.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_1.n_1007.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_1.n_1007.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_20.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_21.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_22.n_26.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_22.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_23.n_21.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_23.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_2.n_994.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_2.n_994.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_3.n_914.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_3.n_914.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_4.n_665.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_4.n_665.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_5.n_564.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_5.n_564.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_6.n_444.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_6.n_444.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_7.n_421.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_7.n_421.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_8.n_407.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_8.n_407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_9.n_213.CWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_9.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_0.n_388.CWM.meme motif-alignments-all-vs-all/ZNF280C/ZNF280C-201-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_0.n_388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_1.n_161.CWM.meme motif-alignments-all-vs-all/ZNF280C/ZNF280C-201-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_1.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF280C/ZNF280C-201-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_2.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF280C/ZNF280C-201-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_3.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_0.n_1430.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_0.n_1430.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_10.n_195.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_10.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_11.n_187.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_11.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_12.n_176.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_12.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_13.n_168.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_13.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_14.n_154.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_14.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_15.n_148.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_15.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_16.n_138.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_16.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_17.n_127.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_17.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_18.n_124.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_18.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_19.n_112.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_19.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_1.n_1257.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_1.n_1257.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_20.n_63.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_20.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_21.n_56.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_21.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_22.n_52.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_22.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_23.n_48.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_23.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_24.n_42.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_24.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_25.n_35.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_25.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_26.n_30.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_26.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_27.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_2.n_1239.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_2.n_1239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_3.n_820.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_3.n_820.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_4.n_503.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_4.n_503.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_5.n_285.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_5.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_6.n_284.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_6.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_7.n_261.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_7.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_8.n_216.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_8.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_9.n_204.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_9.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_0.n_431.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_0.n_431.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_11.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_12.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_1.n_180.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_1.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_2.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_3.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_4.n_57.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_4.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_5.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_6.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_7.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_8.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_9.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_32.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_193.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_187.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_139.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_120.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_112.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_111.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_0.n_381.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_0.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_10.n_146.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_10.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_11.n_133.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_11.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_12.n_133.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_12.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_13.n_125.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_13.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_14.n_119.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_14.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_15.n_115.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_15.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_16.n_104.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_16.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_17.n_103.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_17.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_18.n_102.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_18.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_19.n_87.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_19.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_1.n_362.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_1.n_362.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_20.n_87.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_20.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_21.n_86.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_21.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_22.n_62.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_22.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_23.n_60.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_23.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_24.n_58.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_24.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_25.n_49.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_25.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_26.n_47.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_26.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_27.n_44.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_27.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_28.n_42.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_28.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_29.n_38.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_29.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_2.n_345.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_2.n_345.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_30.n_38.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_30.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_31.n_36.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_31.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_32.n_32.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_32.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_33.n_31.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_33.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_34.n_31.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_34.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_35.n_30.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_35.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_36.n_24.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_36.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_37.n_22.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_37.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_38.n_22.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_38.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_39.n_20.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_39.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_3.n_341.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_3.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_40.n_20.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_40.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_4.n_337.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_4.n_337.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_5.n_223.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_5.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_6.n_179.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_6.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_7.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_8.n_158.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_8.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_9.n_154.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_9.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_0.n_6064.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_0.n_6064.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_10.n_338.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_10.n_338.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_11.n_331.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_11.n_331.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_12.n_311.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_12.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_13.n_269.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_13.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_14.n_267.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_14.n_267.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_15.n_256.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_15.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_16.n_246.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_16.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_17.n_234.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_17.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_18.n_231.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_18.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_19.n_210.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_19.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_1.n_1895.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_1.n_1895.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_20.n_175.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_20.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_21.n_170.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_21.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_22.n_163.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_22.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_23.n_143.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_23.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_24.n_132.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_24.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_25.n_129.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_25.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_26.n_125.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_26.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_27.n_114.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_27.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_28.n_106.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_28.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_29.n_100.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_29.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_2.n_1064.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_2.n_1064.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_30.n_99.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_30.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_31.n_94.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_31.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_32.n_81.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_32.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_33.n_79.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_33.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_34.n_74.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_34.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_35.n_73.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_35.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_36.n_60.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_36.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_37.n_59.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_37.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_38.n_54.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_38.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_39.n_51.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_39.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_3.n_1025.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_3.n_1025.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_40.n_34.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_40.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_41.n_28.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_41.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_42.n_27.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_42.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_43.n_27.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_43.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_44.n_23.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_44.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_4.n_1018.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_4.n_1018.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_5.n_711.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_5.n_711.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_6.n_700.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_6.n_700.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_7.n_521.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_7.n_521.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_8.n_461.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_8.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_9.n_384.CWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_9.n_384.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_0.n_72.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_0.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_10.n_36.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_10.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_11.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_12.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_13.n_28.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_13.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_14.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_1.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_2.n_60.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_2.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_3.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_4.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_5.n_50.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_5.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_6.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_7.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_8.n_44.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_8.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_9.n_41.CWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_9.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_11.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_12.n_46.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_12.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_13.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_14.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_15.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_16.n_31.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_16.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_17.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_18.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_1.n_199.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_1.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_2.n_152.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_2.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_3.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_4.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_5.n_78.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_5.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_6.n_78.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_6.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_7.n_74.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_7.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_8.n_72.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_8.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_11.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_12.n_46.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_12.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_13.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_14.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_15.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_16.n_31.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_16.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_17.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_18.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_1.n_199.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_1.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_2.n_152.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_2.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_3.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_4.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_5.n_78.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_5.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_6.n_78.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_6.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_7.n_74.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_7.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_8.n_72.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_8.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_0.n_2516.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_0.n_2516.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_10.n_277.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_10.n_277.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_11.n_243.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_11.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_12.n_207.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_12.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_13.n_95.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_13.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_14.n_88.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_14.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_15.n_85.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_15.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_16.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_1.n_1300.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_1.n_1300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_2.n_1145.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_2.n_1145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_3.n_1140.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_3.n_1140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_4.n_1021.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_4.n_1021.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_5.n_710.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_5.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_6.n_560.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_6.n_560.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_7.n_508.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_7.n_508.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_8.n_374.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_8.n_374.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_9.n_311.CWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_9.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_0.n_6169.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_0.n_6169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_10.n_200.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_10.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_11.n_169.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_11.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_12.n_165.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_12.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_13.n_115.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_13.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_14.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_15.n_75.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_15.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_16.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_1.n_4230.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_1.n_4230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_2.n_2612.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_2.n_2612.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_3.n_2353.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_3.n_2353.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_4.n_2223.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_4.n_2223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_5.n_2137.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_5.n_2137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_6.n_658.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_6.n_658.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_7.n_449.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_7.n_449.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_8.n_429.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_8.n_429.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_9.n_260.CWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_9.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_0.n_172.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_0.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_10.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_1.n_85.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_1.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_2.n_81.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_2.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_3.n_81.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_3.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_4.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_5.n_67.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_5.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_6.n_52.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_6.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_7.n_48.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_7.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_8.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_0.n_2238.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_0.n_2238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_10.n_215.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_10.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_11.n_117.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_11.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_12.n_57.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_12.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_13.n_57.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_13.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_14.n_56.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_14.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_1.n_1186.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_1.n_1186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_2.n_855.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_2.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_3.n_706.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_3.n_706.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_4.n_620.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_4.n_620.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_5.n_544.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_5.n_544.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_6.n_335.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_6.n_335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_7.n_307.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_7.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_8.n_293.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_8.n_293.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_9.n_251.CWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_9.n_251.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_0.n_243.CWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_0.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_1.n_165.CWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_1.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_2.n_87.CWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_2.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_3.n_81.CWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_3.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_4.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_6.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_0.n_3441.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_0.n_3441.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_10.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_11.n_34.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_11.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_12.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_14.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_1.n_1269.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_1.n_1269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_2.n_1092.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_2.n_1092.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_3.n_664.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_3.n_664.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_4.n_367.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_4.n_367.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_6.n_162.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_6.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_7.n_76.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_7.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_8.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_9.n_61.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_9.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_0.n_5462.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_0.n_5462.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_10.n_305.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_10.n_305.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_11.n_228.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_11.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_12.n_218.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_12.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_13.n_161.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_13.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_14.n_146.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_14.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_15.n_142.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_15.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_16.n_128.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_16.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_17.n_97.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_17.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_18.n_77.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_18.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_19.n_69.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_19.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_1.n_4127.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_1.n_4127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_20.n_65.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_20.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_21.n_61.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_21.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_22.n_47.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_22.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_23.n_40.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_23.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_24.n_29.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_24.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_25.n_28.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_25.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_26.n_28.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_26.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_27.n_26.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_27.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_2.n_3013.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_2.n_3013.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_3.n_2776.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_3.n_2776.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_4.n_2639.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_4.n_2639.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_5.n_2062.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_5.n_2062.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_6.n_1060.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_6.n_1060.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_7.n_586.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_7.n_586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_8.n_388.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_8.n_388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_9.n_308.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_9.n_308.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_0.n_69.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_0.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_1.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_2.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_3.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_4.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_6.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_7.n_26.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_7.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_8.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_0.n_1431.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_0.n_1431.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_10.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_11.n_78.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_11.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_12.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_13.n_74.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_13.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_14.n_54.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_14.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_15.n_38.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_15.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_16.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_17.n_33.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_17.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_1.n_563.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_1.n_563.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_2.n_198.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_2.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_3.n_159.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_3.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_4.n_118.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_4.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_5.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_6.n_100.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_6.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_7.n_100.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_7.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_8.n_97.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_8.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_9.n_93.CWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_9.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_0.n_7643.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_0.n_7643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_10.n_118.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_10.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_11.n_87.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_11.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_12.n_65.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_12.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_13.n_53.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_13.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_14.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_1.n_1439.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_1.n_1439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_2.n_1122.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_2.n_1122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_3.n_535.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_3.n_535.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_4.n_398.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_4.n_398.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_5.n_363.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_5.n_363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_6.n_355.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_6.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_7.n_349.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_7.n_349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_8.n_214.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_8.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_9.n_214.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_9.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK542-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK542-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK542-Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK542-Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_0.n_299.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_0.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_10.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_1.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_2.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_3.n_60.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_3.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_4.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_5.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_7.n_33.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_7.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_9.n_31.CWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_9.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_0.n_21524.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_0.n_21524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_10.n_51.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_10.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_11.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_12.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_13.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_14.n_24.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_14.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_1.n_3965.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_1.n_3965.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_2.n_1886.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_2.n_1886.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_3.n_1410.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_3.n_1410.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_4.n_378.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_4.n_378.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_5.n_321.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_5.n_321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_6.n_240.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_6.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_7.n_224.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_7.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_8.n_127.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_8.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_0.n_1738.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_0.n_1738.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_10.n_379.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_10.n_379.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_11.n_308.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_11.n_308.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_12.n_257.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_12.n_257.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_13.n_92.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_13.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_14.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_15.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_16.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_1.n_1617.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_1.n_1617.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_2.n_1012.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_2.n_1012.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_3.n_1011.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_3.n_1011.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_4.n_829.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_4.n_829.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_5.n_549.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_5.n_549.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_6.n_508.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_6.n_508.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_7.n_472.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_7.n_472.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_8.n_405.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_8.n_405.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_9.n_393.CWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_9.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_0.n_2455.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_0.n_2455.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_10.n_431.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_10.n_431.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_11.n_314.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_11.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_12.n_311.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_12.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_13.n_303.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_13.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_14.n_208.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_14.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_15.n_168.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_15.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_16.n_163.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_16.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_17.n_146.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_17.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_18.n_143.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_18.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_19.n_143.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_19.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_1.n_1316.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_1.n_1316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_20.n_116.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_20.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_21.n_102.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_21.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_22.n_82.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_22.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_23.n_68.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_23.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_24.n_44.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_24.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_25.n_33.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_25.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_26.n_30.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_26.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_2.n_1146.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_2.n_1146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_3.n_1116.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_3.n_1116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_4.n_921.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_4.n_921.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_5.n_735.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_5.n_735.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_6.n_708.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_6.n_708.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_7.n_637.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_7.n_637.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_8.n_592.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_8.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_9.n_502.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_9.n_502.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_0.n_2352.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_0.n_2352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_10.n_198.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_10.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_11.n_197.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_11.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_12.n_71.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_12.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_13.n_43.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_13.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_1.n_798.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_1.n_798.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_2.n_715.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_2.n_715.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_3.n_676.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_3.n_676.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_4.n_527.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_4.n_527.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_5.n_361.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_5.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_6.n_285.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_6.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_7.n_285.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_7.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_8.n_255.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_8.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_9.n_230.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_9.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_0.n_450.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_0.n_450.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_11.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_12.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_13.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_14.n_29.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_14.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_16.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_1.n_142.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_1.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_2.n_136.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_2.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_3.n_132.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_3.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_4.n_122.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_4.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_5.n_117.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_5.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_6.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_7.n_86.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_7.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_8.n_72.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_8.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_9.n_63.CWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_9.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_0.n_1466.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_0.n_1466.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_10.n_135.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_10.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_11.n_97.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_11.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_12.n_87.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_12.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_13.n_77.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_13.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_14.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_1.n_886.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_1.n_886.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_2.n_886.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_2.n_886.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_3.n_677.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_3.n_677.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_4.n_407.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_4.n_407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_5.n_292.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_5.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_6.n_286.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_6.n_286.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_7.n_186.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_7.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_8.n_159.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_8.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_9.n_139.CWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_9.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_0.n_9564.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_0.n_9564.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_10.n_281.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_10.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_11.n_170.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_11.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_12.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_13.n_118.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_13.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_14.n_101.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_14.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_15.n_79.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_15.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_16.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_16.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_17.n_43.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_17.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_19.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_1.n_4518.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_1.n_4518.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_2.n_3801.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_2.n_3801.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_3.n_3137.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_3.n_3137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_4.n_1056.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_4.n_1056.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_5.n_608.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_5.n_608.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_6.n_599.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_6.n_599.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_7.n_475.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_7.n_475.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_8.n_387.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_8.n_387.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_9.n_302.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_9.n_302.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_0.n_663.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_0.n_663.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_10.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_10.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_11.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_11.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_12.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_12.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_13.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_13.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_14.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_15.n_66.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_15.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_16.n_64.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_16.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_17.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_18.n_44.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_18.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_19.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_19.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_1.n_450.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_1.n_450.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_20.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_20.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_21.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_2.n_408.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_2.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_3.n_297.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_3.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_4.n_141.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_4.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_5.n_137.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_5.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_6.n_123.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_6.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_7.n_89.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_7.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_8.n_89.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_8.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_9.n_88.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_9.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_0.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_10.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_12.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_1.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_2.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_3.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_0.n_9564.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_0.n_9564.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_10.n_281.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_10.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_11.n_170.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_11.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_12.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_13.n_118.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_13.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_14.n_101.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_14.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_15.n_79.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_15.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_16.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_16.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_17.n_43.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_17.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_19.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_1.n_4518.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_1.n_4518.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_2.n_3801.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_2.n_3801.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_3.n_3137.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_3.n_3137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_4.n_1056.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_4.n_1056.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_5.n_608.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_5.n_608.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_6.n_599.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_6.n_599.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_7.n_475.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_7.n_475.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_8.n_387.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_8.n_387.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_9.n_302.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_9.n_302.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_0.n_663.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_0.n_663.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_10.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_10.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_11.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_11.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_12.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_12.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_13.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_13.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_14.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_15.n_66.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_15.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_16.n_64.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_16.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_17.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_18.n_44.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_18.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_19.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_19.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_1.n_450.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_1.n_450.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_20.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_20.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_21.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_2.n_408.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_2.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_3.n_297.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_3.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_4.n_141.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_4.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_5.n_137.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_5.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_6.n_123.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_6.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_7.n_89.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_7.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_8.n_89.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_8.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_9.n_88.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_9.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_0.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_10.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_12.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_1.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_2.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_3.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_0.n_505.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_0.n_505.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_10.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_11.n_36.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_11.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_1.n_352.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_1.n_352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_2.n_229.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_2.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_3.n_175.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_3.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_4.n_147.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_4.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_5.n_98.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_5.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_6.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_7.n_79.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_7.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_8.n_78.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_8.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_9.n_66.CWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_9.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HEK342-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HEK342-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_0.n_1331.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_0.n_1331.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_10.n_207.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_10.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_11.n_175.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_11.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_12.n_174.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_12.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_13.n_117.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_13.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_14.n_115.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_14.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_15.n_111.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_15.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_16.n_103.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_16.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_17.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_18.n_81.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_18.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_19.n_46.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_19.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_1.n_1180.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_1.n_1180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_20.n_45.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_20.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_21.n_34.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_21.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_22.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_23.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_2.n_912.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_2.n_912.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_3.n_469.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_3.n_469.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_4.n_346.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_4.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_5.n_294.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_5.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_6.n_257.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_6.n_257.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_7.n_236.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_7.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_8.n_218.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_8.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_9.n_213.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_9.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_0.n_5162.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_0.n_5162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_1.n_4964.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_1.n_4964.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_2.n_121.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_2.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_3.n_96.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_3.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_0.n_11181.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_0.n_11181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_10.n_101.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_10.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_11.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_12.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_13.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_14.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_1.n_8703.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_1.n_8703.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_2.n_8515.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_2.n_8515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_3.n_365.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_3.n_365.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_4.n_327.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_4.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_5.n_295.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_5.n_295.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_6.n_266.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_6.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_7.n_220.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_7.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_8.n_130.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_8.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_9.n_119.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_9.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_0.n_1128.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_0.n_1128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_10.n_64.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_10.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_11.n_59.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_11.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_12.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_13.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_14.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_1.n_375.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_1.n_375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_2.n_220.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_2.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_3.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_4.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_5.n_93.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_5.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_6.n_89.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_6.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_7.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_8.n_75.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_8.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_9.n_66.CWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_9.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_0.n_2123.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_0.n_2123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_10.n_158.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_10.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_11.n_118.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_11.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_12.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_13.n_53.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_13.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_14.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_1.n_1788.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_1.n_1788.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_2.n_515.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_2.n_515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_3.n_449.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_3.n_449.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_4.n_423.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_4.n_423.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_5.n_373.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_5.n_373.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_6.n_342.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_6.n_342.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_7.n_291.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_7.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_8.n_238.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_8.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_9.n_197.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_9.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_0.n_6959.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_0.n_6959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_10.n_545.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_10.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_11.n_416.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_11.n_416.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_12.n_373.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_12.n_373.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_13.n_338.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_13.n_338.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_14.n_256.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_14.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_15.n_243.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_15.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_16.n_238.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_16.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_17.n_195.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_17.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_18.n_180.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_18.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_19.n_138.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_19.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_1.n_5053.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_1.n_5053.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_20.n_89.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_20.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_21.n_60.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_21.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_22.n_52.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_22.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_23.n_51.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_23.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_24.n_38.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_24.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_25.n_29.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_25.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_26.n_22.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_26.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_27.n_22.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_27.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_28.n_21.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_28.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_29.n_20.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_29.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_2.n_1959.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_2.n_1959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_30.n_20.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_30.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_3.n_1610.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_3.n_1610.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_4.n_1045.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_4.n_1045.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_5.n_979.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_5.n_979.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_6.n_971.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_6.n_971.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_8.n_701.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_8.n_701.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_9.n_569.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_9.n_569.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_0.n_2636.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_0.n_2636.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_10.n_171.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_10.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_11.n_168.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_11.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_12.n_163.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_12.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_13.n_140.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_13.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_14.n_132.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_14.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_15.n_115.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_15.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_16.n_82.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_16.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_17.n_73.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_17.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_18.n_56.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_18.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_19.n_48.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_19.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_1.n_1637.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_1.n_1637.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_20.n_47.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_20.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_21.n_42.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_21.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_22.n_39.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_22.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_23.n_33.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_23.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_24.n_27.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_24.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_2.n_1329.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_2.n_1329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_3.n_452.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_3.n_452.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_4.n_407.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_4.n_407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_5.n_385.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_5.n_385.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_6.n_346.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_6.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_7.n_320.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_7.n_320.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_8.n_182.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_8.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_9.n_176.CWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_9.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_0.n_3164.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_0.n_3164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_10.n_99.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_10.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_11.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_12.n_69.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_12.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_13.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_14.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_15.n_38.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_15.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_16.n_28.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_16.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_1.n_1875.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_1.n_1875.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_2.n_1648.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_2.n_1648.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_3.n_1074.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_3.n_1074.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_4.n_621.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_4.n_621.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_5.n_345.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_5.n_345.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_6.n_191.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_6.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_7.n_142.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_7.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_8.n_127.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_8.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_9.n_123.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_9.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK374-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK374-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK374-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK374-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_0.n_455.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_0.n_455.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_1.n_293.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_1.n_293.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_2.n_162.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_2.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_3.n_153.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_3.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_4.n_114.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_4.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_5.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_6.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_7.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_8.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_0.n_1680.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_0.n_1680.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_10.n_104.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_10.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_11.n_84.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_11.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_12.n_72.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_12.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_13.n_58.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_13.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_14.n_56.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_14.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_15.n_44.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_15.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_16.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_19.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_1.n_1275.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_1.n_1275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_2.n_935.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_2.n_935.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_3.n_777.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_3.n_777.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_4.n_591.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_4.n_591.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_5.n_553.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_5.n_553.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_6.n_445.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_6.n_445.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_7.n_445.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_7.n_445.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_8.n_396.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_8.n_396.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_9.n_146.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_9.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_0.n_1721.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_0.n_1721.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_10.n_408.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_10.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_11.n_278.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_11.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_12.n_231.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_12.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_13.n_231.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_13.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_14.n_215.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_14.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_15.n_202.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_15.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_16.n_143.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_16.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_17.n_143.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_17.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_18.n_117.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_18.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_19.n_61.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_19.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_1.n_1561.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_1.n_1561.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_20.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_21.n_48.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_21.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_22.n_42.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_22.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_23.n_33.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_23.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_24.n_22.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_24.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_2.n_982.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_2.n_982.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_3.n_860.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_3.n_860.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_4.n_804.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_4.n_804.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_5.n_560.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_5.n_560.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_6.n_559.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_6.n_559.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_7.n_541.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_7.n_541.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_8.n_528.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_8.n_528.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_9.n_460.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_9.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_0.n_898.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_0.n_898.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_10.n_139.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_10.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_11.n_124.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_11.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_12.n_114.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_12.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_13.n_104.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_13.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_14.n_95.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_14.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_15.n_88.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_15.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_16.n_87.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_16.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_17.n_72.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_17.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_18.n_43.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_18.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_19.n_39.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_19.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_1.n_840.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_1.n_840.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_20.n_23.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_20.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_2.n_585.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_2.n_585.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_3.n_471.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_3.n_471.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_4.n_460.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_4.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_5.n_325.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_5.n_325.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_6.n_249.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_6.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_7.n_189.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_7.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_8.n_156.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_8.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_9.n_143.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_9.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_0.n_1102.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_0.n_1102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_10.n_311.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_10.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_11.n_291.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_11.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_12.n_289.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_12.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_13.n_285.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_13.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_14.n_249.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_14.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_15.n_178.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_15.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_16.n_148.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_16.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_17.n_129.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_17.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_18.n_93.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_18.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_19.n_78.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_19.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_1.n_504.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_1.n_504.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_20.n_72.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_20.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_21.n_46.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_21.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_22.n_36.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_22.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_2.n_503.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_2.n_503.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_3.n_456.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_3.n_456.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_4.n_450.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_4.n_450.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_5.n_376.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_5.n_376.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_6.n_371.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_6.n_371.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_7.n_345.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_7.n_345.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_8.n_344.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_8.n_344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_9.n_322.CWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_9.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_0.n_236.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_0.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_10.n_90.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_10.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_11.n_86.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_11.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_12.n_77.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_12.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_13.n_76.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_13.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_14.n_68.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_14.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_15.n_54.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_15.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_16.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_17.n_37.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_17.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_18.n_36.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_18.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_1.n_226.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_1.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_2.n_204.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_2.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_3.n_165.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_3.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_4.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_5.n_146.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_5.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_6.n_123.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_6.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_7.n_116.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_7.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_8.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_9.n_93.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_9.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_0.n_13283.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_0.n_13283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_10.n_250.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_10.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_11.n_202.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_11.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_12.n_159.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_12.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_13.n_148.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_13.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_14.n_141.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_14.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_15.n_140.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_15.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_16.n_72.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_16.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_17.n_48.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_17.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_18.n_43.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_18.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_19.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_1.n_3334.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_1.n_3334.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_20.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_21.n_20.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_21.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_2.n_2250.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_2.n_2250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_3.n_2129.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_3.n_2129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_4.n_2111.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_4.n_2111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_5.n_724.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_5.n_724.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_6.n_632.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_6.n_632.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_7.n_404.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_7.n_404.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_8.n_327.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_8.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_9.n_317.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_9.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_676.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_676.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_645.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_645.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_484.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_190.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_177.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_0.n_700.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_0.n_700.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_10.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_11.n_28.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_11.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_12.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_1.n_682.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_1.n_682.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_2.n_454.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_2.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_3.n_305.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_3.n_305.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_4.n_252.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_4.n_252.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_5.n_223.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_5.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_6.n_120.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_6.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_7.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_8.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_9.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_0.n_4280.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_0.n_4280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_11.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_1.n_3788.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_1.n_3788.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_2.n_3317.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_2.n_3317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_3.n_1741.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_3.n_1741.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_4.n_1336.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_4.n_1336.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_5.n_949.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_5.n_949.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_6.n_648.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_6.n_648.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_7.n_340.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_7.n_340.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_8.n_152.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_8.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_9.n_82.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_9.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_0.n_3352.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_0.n_3352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_10.n_194.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_10.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_11.n_175.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_11.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_12.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_13.n_30.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_13.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_1.n_2856.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_1.n_2856.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_2.n_1730.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_2.n_1730.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_3.n_998.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_3.n_998.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_4.n_328.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_4.n_328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_5.n_328.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_5.n_328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_6.n_260.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_6.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_7.n_249.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_7.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_8.n_243.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_8.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_9.n_211.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_9.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_0.n_2275.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_0.n_2275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_10.n_44.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_10.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_1.n_409.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_1.n_409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_2.n_399.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_2.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_3.n_369.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_3.n_369.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_4.n_316.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_4.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_5.n_304.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_5.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_6.n_259.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_6.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_7.n_172.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_7.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_8.n_138.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_8.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_9.n_102.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_9.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_0.n_1224.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_0.n_1224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_10.n_28.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_10.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_1.n_345.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_1.n_345.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_2.n_114.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_2.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_3.n_101.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_3.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_4.n_75.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_4.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_5.n_72.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_5.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_6.n_56.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_6.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_7.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_9.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_0.n_6743.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_0.n_6743.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_10.n_192.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_10.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_11.n_164.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_11.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_12.n_160.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_12.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_13.n_134.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_13.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_14.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_15.n_94.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_15.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_16.n_82.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_16.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_17.n_67.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_17.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_18.n_50.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_18.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_19.n_37.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_19.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_1.n_3888.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_1.n_3888.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_20.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_21.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_2.n_895.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_2.n_895.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_3.n_564.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_3.n_564.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_4.n_393.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_4.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_5.n_349.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_5.n_349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_6.n_296.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_6.n_296.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_7.n_254.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_7.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_8.n_243.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_8.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_9.n_227.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_9.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_0.n_3410.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_0.n_3410.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_10.n_82.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_10.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_11.n_52.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_11.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_12.n_52.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_12.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_13.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_14.n_36.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_14.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_16.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_1.n_1919.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_1.n_1919.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_2.n_1743.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_2.n_1743.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_3.n_602.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_3.n_602.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_4.n_586.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_4.n_586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_5.n_506.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_5.n_506.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_6.n_406.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_6.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_7.n_301.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_7.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_8.n_227.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_8.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_9.n_179.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_9.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_0.n_4068.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_0.n_4068.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_10.n_77.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_10.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_1.n_2129.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_1.n_2129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_2.n_1836.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_2.n_1836.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_3.n_1817.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_3.n_1817.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_4.n_851.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_4.n_851.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_5.n_601.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_5.n_601.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_6.n_469.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_6.n_469.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_7.n_248.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_7.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_8.n_211.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_8.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_9.n_117.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_9.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_0.n_5245.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_0.n_5245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_10.n_390.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_10.n_390.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_11.n_342.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_11.n_342.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_12.n_287.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_12.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_13.n_274.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_13.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_14.n_151.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_14.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_15.n_129.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_15.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_16.n_72.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_16.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_17.n_53.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_17.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_18.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_19.n_34.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_19.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_1.n_4460.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_1.n_4460.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_20.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_21.n_28.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_21.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_22.n_23.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_22.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_23.n_20.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_23.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_2.n_3417.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_2.n_3417.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_3.n_1978.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_3.n_1978.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_4.n_1231.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_4.n_1231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_5.n_529.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_5.n_529.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_6.n_523.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_6.n_523.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_7.n_484.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_7.n_484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_8.n_440.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_8.n_440.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_9.n_405.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_9.n_405.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_0.n_2477.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_0.n_2477.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_10.n_90.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_10.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_11.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_1.n_1989.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_1.n_1989.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_2.n_1832.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_2.n_1832.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_3.n_1504.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_3.n_1504.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_4.n_1296.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_4.n_1296.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_5.n_964.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_5.n_964.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_6.n_705.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_6.n_705.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_7.n_328.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_7.n_328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_8.n_162.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_8.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_0.n_1282.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_0.n_1282.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_1.n_1150.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_1.n_1150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_2.n_284.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_2.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_3.n_96.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_3.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_4.n_84.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_4.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_6.n_73.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_6.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_7.n_48.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_7.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_8.n_37.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_8.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_0.n_237.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_0.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_11.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_13.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_1.n_221.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_1.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_2.n_212.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_2.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_3.n_198.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_3.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_4.n_195.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_4.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_5.n_175.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_5.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_6.n_76.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_6.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_7.n_62.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_7.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_8.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_9.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_0.n_505.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_0.n_505.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_1.n_244.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_1.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_2.n_113.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_2.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_3.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_4.n_75.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_4.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_5.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_6.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_0.n_676.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_0.n_676.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_10.n_55.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_10.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_11.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_12.n_47.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_12.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_13.n_36.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_13.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_1.n_485.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_1.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_2.n_149.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_2.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_3.n_141.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_3.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_4.n_107.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_4.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_7.n_73.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_7.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_8.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_9.n_56.CWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_9.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_0.n_539.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_0.n_539.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_1.n_400.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_1.n_400.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_2.n_293.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_2.n_293.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_3.n_229.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_3.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_4.n_165.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_4.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_5.n_52.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_5.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_0.n_13898.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_0.n_13898.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_11.n_48.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_11.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_12.n_46.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_12.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_13.n_43.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_13.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_14.n_32.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_14.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_16.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_1.n_7267.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_1.n_7267.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_2.n_600.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_2.n_600.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_3.n_384.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_3.n_384.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_4.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_5.n_170.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_5.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_6.n_104.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_6.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_7.n_94.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_7.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_8.n_81.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_8.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_9.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_23.n_147.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_23.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_26.n_139.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_26.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_55.n_41.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_55.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_56.n_40.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_56.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_58.n_29.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_58.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_59.n_25.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_59.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_0.n_12692.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_0.n_12692.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_10.n_178.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_10.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_11.n_149.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_11.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_12.n_147.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_12.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_13.n_129.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_13.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_14.n_122.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_14.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_15.n_119.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_15.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_16.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_17.n_111.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_17.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_18.n_95.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_18.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_19.n_91.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_19.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_1.n_1198.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_1.n_1198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_20.n_71.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_20.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_21.n_69.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_21.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_22.n_61.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_22.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_23.n_56.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_23.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_24.n_49.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_24.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_25.n_31.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_25.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_26.n_20.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_26.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_2.n_725.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_2.n_725.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_3.n_439.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_3.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_4.n_392.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_4.n_392.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_5.n_342.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_5.n_342.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_6.n_230.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_6.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_7.n_210.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_7.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_8.n_207.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_8.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_9.n_182.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_9.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_0.n_1690.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_0.n_1690.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_10.n_173.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_10.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_11.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_12.n_87.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_12.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_13.n_74.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_13.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_14.n_66.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_14.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_15.n_57.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_15.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_16.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_17.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_18.n_26.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_18.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_1.n_1249.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_1.n_1249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_2.n_731.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_2.n_731.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_3.n_621.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_3.n_621.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_4.n_574.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_4.n_574.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_5.n_403.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_5.n_403.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_6.n_306.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_6.n_306.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_7.n_275.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_7.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_8.n_224.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_8.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_9.n_214.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_9.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_0.n_4358.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_0.n_4358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_10.n_454.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_10.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_11.n_303.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_11.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_12.n_288.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_12.n_288.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_13.n_260.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_13.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_14.n_258.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_14.n_258.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_15.n_256.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_15.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_16.n_250.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_16.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_17.n_209.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_17.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_18.n_172.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_18.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_19.n_129.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_19.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_1.n_3883.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_1.n_3883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_20.n_102.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_20.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_21.n_89.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_21.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_22.n_75.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_22.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_23.n_67.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_23.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_24.n_65.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_24.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_25.n_42.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_25.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_26.n_35.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_26.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_27.n_29.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_27.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_28.n_22.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_28.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_2.n_824.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_2.n_824.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_3.n_708.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_3.n_708.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_4.n_675.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_4.n_675.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_5.n_609.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_5.n_609.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_6.n_505.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_6.n_505.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_7.n_480.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_7.n_480.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_8.n_478.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_8.n_478.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_9.n_467.CWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_9.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_0.n_601.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_0.n_601.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_10.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_1.n_582.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_1.n_582.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_2.n_310.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_2.n_310.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_4.n_108.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_4.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_5.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_6.n_96.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_6.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_7.n_61.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_7.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_8.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_9.n_55.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_9.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_0.n_177.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_0.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_1.n_79.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_1.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_2.n_49.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_2.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_3.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_4.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_5.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_6.n_34.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_6.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_7.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_8.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_0.n_517.CWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_0.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_1.n_361.CWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_1.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_2.n_340.CWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_2.n_340.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_3.n_68.CWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_3.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_0.n_2820.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_0.n_2820.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_10.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_11.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_12.n_27.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_12.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_13.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_14.n_24.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_14.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_15.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_1.n_1485.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_1.n_1485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_2.n_698.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_2.n_698.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_3.n_346.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_3.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_4.n_282.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_4.n_282.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_5.n_123.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_5.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_6.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_7.n_76.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_7.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_8.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_9.n_68.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_9.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_10.n_111.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_10.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_11.n_107.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_11.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_12.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_13.n_83.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_13.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_14.n_50.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_14.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_15.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_16.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_1.n_2649.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_1.n_2649.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_2.n_276.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_2.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_3.n_255.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_3.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_4.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_5.n_200.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_5.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_6.n_195.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_6.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_7.n_168.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_7.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_8.n_158.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_8.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_9.n_128.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_9.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_0.n_2486.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_0.n_2486.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_1.n_246.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_1.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_2.n_166.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_2.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_3.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_4.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_0.n_2820.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_0.n_2820.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_10.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_11.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_12.n_27.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_12.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_13.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_14.n_24.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_14.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_15.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_1.n_1485.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_1.n_1485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_2.n_698.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_2.n_698.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_3.n_346.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_3.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_4.n_282.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_4.n_282.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_5.n_123.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_5.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_6.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_7.n_76.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_7.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_8.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_9.n_68.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_9.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_10.n_111.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_10.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_11.n_107.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_11.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_12.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_13.n_83.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_13.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_14.n_50.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_14.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_15.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_16.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_1.n_2649.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_1.n_2649.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_2.n_276.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_2.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_3.n_255.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_3.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_4.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_5.n_200.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_5.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_6.n_195.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_6.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_7.n_168.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_7.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_8.n_158.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_8.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_9.n_128.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_9.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_0.n_2486.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_0.n_2486.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_1.n_246.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_1.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_2.n_166.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_2.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_3.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_4.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_0.n_1608.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_0.n_1608.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_10.n_150.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_10.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_11.n_124.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_11.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_12.n_117.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_12.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_13.n_108.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_13.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_14.n_94.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_14.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_15.n_78.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_15.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_16.n_78.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_16.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_17.n_75.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_17.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_18.n_58.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_18.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_19.n_53.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_19.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_1.n_548.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_1.n_548.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_20.n_49.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_20.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_21.n_49.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_21.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_22.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_23.n_27.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_23.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_24.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_25.n_23.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_25.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_2.n_526.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_2.n_526.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_3.n_391.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_3.n_391.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_4.n_383.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_4.n_383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_5.n_305.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_5.n_305.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_6.n_278.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_6.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_7.n_200.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_7.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_8.n_174.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_8.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_9.n_154.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_9.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_0.n_1205.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_0.n_1205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_10.n_156.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_10.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_11.n_129.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_11.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_12.n_71.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_12.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_13.n_64.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_13.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_14.n_59.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_14.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_15.n_55.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_15.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_16.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_17.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_18.n_25.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_18.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_1.n_1021.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_1.n_1021.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_2.n_901.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_2.n_901.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_3.n_560.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_3.n_560.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_4.n_336.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_4.n_336.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_5.n_289.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_5.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_6.n_279.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_6.n_279.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_7.n_265.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_7.n_265.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_8.n_242.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_8.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_9.n_168.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_9.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_0.n_966.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_0.n_966.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_1.n_540.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_1.n_540.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_2.n_73.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_2.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_0.n_1746.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_0.n_1746.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_10.n_83.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_10.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_11.n_79.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_11.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_12.n_78.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_12.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_13.n_73.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_13.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_14.n_49.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_14.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_16.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_17.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_1.n_1243.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_1.n_1243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_2.n_907.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_2.n_907.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_3.n_452.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_3.n_452.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_4.n_292.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_4.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_5.n_282.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_5.n_282.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_7.n_149.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_7.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_8.n_116.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_8.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_9.n_95.CWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_9.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_0.n_1792.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_0.n_1792.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_1.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_2.n_104.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_2.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_3.n_102.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_3.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_4.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_5.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_6.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_7.n_26.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_7.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_8.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_0.n_4644.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_0.n_4644.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_10.n_439.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_10.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_11.n_367.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_11.n_367.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_12.n_356.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_12.n_356.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_13.n_313.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_13.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_14.n_251.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_14.n_251.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_15.n_236.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_15.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_16.n_225.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_16.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_17.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_18.n_40.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_18.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_19.n_39.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_19.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_1.n_3844.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_1.n_3844.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_20.n_28.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_20.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_2.n_3280.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_2.n_3280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_3.n_2131.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_3.n_2131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_4.n_1517.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_4.n_1517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_5.n_1199.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_5.n_1199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_6.n_1014.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_6.n_1014.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_7.n_624.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_7.n_624.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_8.n_571.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_8.n_571.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_9.n_516.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_9.n_516.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_0.n_541.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_0.n_541.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_10.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_11.n_34.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_11.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_12.n_28.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_12.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_13.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_1.n_146.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_1.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_2.n_125.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_2.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_3.n_111.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_3.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_4.n_109.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_4.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_5.n_102.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_5.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_6.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_7.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_8.n_53.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_8.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_9.n_50.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_9.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_0.n_1349.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_0.n_1349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_1.n_1134.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_1.n_1134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_2.n_1030.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_2.n_1030.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_3.n_904.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_3.n_904.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_4.n_453.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_4.n_453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_5.n_388.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_5.n_388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_6.n_203.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_6.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_7.n_143.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_7.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_9.n_70.CWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_9.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_0.n_666.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_0.n_666.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_10.n_103.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_10.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_12.n_101.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_12.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_13.n_95.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_13.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_14.n_92.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_14.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_15.n_77.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_15.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_16.n_76.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_16.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_17.n_74.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_17.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_18.n_59.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_18.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_19.n_55.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_19.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_1.n_380.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_1.n_380.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_20.n_39.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_20.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_21.n_35.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_21.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_2.n_375.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_2.n_375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_3.n_266.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_3.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_4.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_5.n_176.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_5.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_6.n_139.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_6.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_7.n_121.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_7.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_8.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_0.n_3391.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_0.n_3391.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_10.n_100.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_10.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_11.n_82.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_11.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_12.n_62.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_12.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_13.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_1.n_1435.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_1.n_1435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_2.n_1066.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_2.n_1066.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_3.n_1043.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_3.n_1043.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_4.n_515.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_4.n_515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_5.n_498.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_5.n_498.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_6.n_441.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_6.n_441.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_7.n_386.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_7.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_8.n_363.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_8.n_363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_9.n_307.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_9.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_0.n_829.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_0.n_829.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_10.n_84.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_10.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_11.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_12.n_46.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_12.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_13.n_40.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_13.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_14.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_1.n_281.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_1.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_2.n_185.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_2.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_3.n_171.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_3.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_5.n_125.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_5.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_6.n_110.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_6.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_7.n_110.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_7.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_8.n_99.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_8.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_9.n_93.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_9.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_0.n_895.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_0.n_895.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_10.n_162.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_10.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_11.n_156.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_11.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_12.n_143.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_12.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_13.n_141.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_13.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_14.n_139.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_14.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_15.n_132.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_15.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_16.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_17.n_108.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_17.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_18.n_104.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_18.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_19.n_104.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_19.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_1.n_666.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_1.n_666.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_20.n_102.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_20.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_21.n_98.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_21.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_22.n_97.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_22.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_23.n_87.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_23.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_24.n_66.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_24.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_25.n_62.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_25.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_26.n_54.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_26.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_27.n_23.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_27.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_2.n_481.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_2.n_481.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_3.n_304.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_3.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_4.n_256.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_4.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_5.n_205.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_5.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_6.n_190.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_6.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_7.n_174.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_7.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_8.n_172.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_8.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_9.n_163.CWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_9.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_0.n_2769.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_0.n_2769.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_10.n_78.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_10.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_1.n_2285.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_1.n_2285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_2.n_1638.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_2.n_1638.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_3.n_1332.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_3.n_1332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_4.n_877.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_4.n_877.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_5.n_647.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_5.n_647.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_6.n_407.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_6.n_407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_7.n_400.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_7.n_400.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_8.n_222.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_8.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_9.n_145.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_9.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_0.n_2769.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_0.n_2769.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_10.n_78.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_10.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_1.n_2285.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_1.n_2285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_2.n_1638.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_2.n_1638.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_3.n_1332.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_3.n_1332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_4.n_877.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_4.n_877.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_5.n_647.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_5.n_647.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_6.n_407.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_6.n_407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_7.n_400.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_7.n_400.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_8.n_222.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_8.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_9.n_145.CWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_9.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_0.n_2622.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_0.n_2622.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_10.n_80.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_10.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_11.n_49.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_11.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_12.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_1.n_1059.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_1.n_1059.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_2.n_944.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_2.n_944.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_3.n_764.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_3.n_764.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_4.n_745.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_4.n_745.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_5.n_517.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_5.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_6.n_385.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_6.n_385.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_7.n_349.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_7.n_349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_8.n_300.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_8.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_9.n_182.CWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_9.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_0.n_5720.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_0.n_5720.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_1.n_541.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_1.n_541.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_2.n_263.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_2.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_3.n_263.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_3.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_4.n_183.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_4.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_5.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_5.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_6.n_82.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_6.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_7.n_62.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_7.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_8.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_8.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_0.n_4803.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_0.n_4803.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_10.n_194.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_10.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_11.n_183.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_11.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_12.n_124.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_12.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_13.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_13.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_14.n_79.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_14.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_15.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_15.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_16.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_16.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_17.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_18.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_19.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_1.n_790.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_1.n_790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_20.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_20.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_2.n_685.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_2.n_685.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_3.n_639.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_3.n_639.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_4.n_488.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_4.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_5.n_367.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_5.n_367.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_6.n_359.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_6.n_359.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_7.n_354.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_7.n_354.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_8.n_340.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_8.n_340.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_9.n_210.CWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_9.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.CWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_0.n_8550.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_0.n_8550.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_10.n_711.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_10.n_711.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_11.n_693.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_11.n_693.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_12.n_548.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_12.n_548.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_13.n_538.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_13.n_538.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_14.n_467.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_14.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_15.n_461.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_15.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_16.n_443.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_16.n_443.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_17.n_338.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_17.n_338.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_18.n_244.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_18.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_19.n_227.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_19.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_1.n_3973.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_1.n_3973.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_20.n_212.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_20.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_21.n_177.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_21.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_22.n_168.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_22.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_23.n_126.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_23.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_24.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_24.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_25.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_26.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_26.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_27.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_27.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_2.n_3245.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_2.n_3245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_3.n_2977.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_3.n_2977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_4.n_2063.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_4.n_2063.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_5.n_1802.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_5.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_6.n_1756.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_6.n_1756.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_7.n_1555.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_7.n_1555.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_8.n_1491.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_8.n_1491.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_9.n_997.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_9.n_997.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_0.n_1482.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_0.n_1482.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_10.n_150.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_10.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_11.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_12.n_141.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_12.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_13.n_100.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_13.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_14.n_91.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_14.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_15.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_15.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_16.n_43.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_16.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_18.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_18.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_19.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_1.n_1093.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_1.n_1093.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_20.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_20.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_21.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_22.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_22.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_2.n_1054.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_2.n_1054.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_3.n_991.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_3.n_991.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_4.n_358.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_4.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_5.n_279.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_5.n_279.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_6.n_257.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_6.n_257.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_7.n_249.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_7.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_8.n_232.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_8.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_9.n_218.CWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_9.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_0.n_5181.CWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_0.n_5181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_1.n_625.CWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_1.n_625.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_2.n_297.CWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_2.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_3.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_3.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_4.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_5.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_6.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_7.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_0.n_2978.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_0.n_2978.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_10.n_40.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_10.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_1.n_2214.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_1.n_2214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_2.n_1312.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_2.n_1312.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_3.n_468.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_3.n_468.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_4.n_349.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_4.n_349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_5.n_280.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_5.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_6.n_254.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_6.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_7.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_8.n_89.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_8.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_9.n_64.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_9.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_10.n_103.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_10.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_11.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_12.n_75.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_12.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_13.n_67.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_13.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_14.n_59.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_14.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_16.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_17.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_18.n_22.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_18.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_19.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_1.n_6835.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_1.n_6835.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_2.n_1140.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_2.n_1140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_3.n_708.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_3.n_708.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_4.n_571.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_4.n_571.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_5.n_525.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_5.n_525.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_6.n_321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_7.n_146.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_7.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_8.n_132.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_8.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_9.n_110.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_9.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_10.n_103.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_10.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_11.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_12.n_75.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_12.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_13.n_67.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_13.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_14.n_59.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_14.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_16.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_17.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_18.n_22.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_18.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_19.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_1.n_6835.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_1.n_6835.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_2.n_1140.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_2.n_1140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_3.n_708.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_3.n_708.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_4.n_571.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_4.n_571.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_5.n_525.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_5.n_525.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_6.n_321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_7.n_146.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_7.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_8.n_132.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_8.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_9.n_110.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_9.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_0.n_1096.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_0.n_1096.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_10.n_59.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_10.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_13.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_14.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_1.n_199.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_1.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_2.n_172.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_2.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_3.n_141.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_3.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_4.n_120.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_4.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_5.n_112.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_5.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_6.n_90.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_6.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_7.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_8.n_77.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_8.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_9.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF347-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_0.n_533.CWM.meme motif-alignments-all-vs-all/ZNF347/ZNF347-201-vs-ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_0.n_533.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF347-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all/ZNF347/ZNF347-201-vs-ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_1.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF347-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF347/ZNF347-201-vs-ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_0.n_2405.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_0.n_2405.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_10.n_266.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_10.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_11.n_210.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_11.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_12.n_189.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_12.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_13.n_183.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_13.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_14.n_178.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_14.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_15.n_159.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_15.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_16.n_152.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_16.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_17.n_131.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_17.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_18.n_106.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_18.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_19.n_80.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_19.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_1.n_2017.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_1.n_2017.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_20.n_71.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_20.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_21.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_2.n_1796.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_2.n_1796.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_3.n_1151.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_3.n_1151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_4.n_837.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_4.n_837.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_5.n_513.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_5.n_513.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_6.n_462.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_6.n_462.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_7.n_394.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_7.n_394.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_8.n_389.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_8.n_389.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_9.n_383.CWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_9.n_383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_0.n_3643.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_0.n_3643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_1.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_2.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_3.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_0.n_124.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_0.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_10.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_11.n_21.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_11.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_1.n_121.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_1.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_2.n_114.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_2.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_3.n_96.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_3.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_4.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_6.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_7.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_8.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_9.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_0.n_549.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_0.n_549.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_10.n_275.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_10.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_11.n_274.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_11.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_12.n_255.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_12.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_13.n_252.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_13.n_252.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_14.n_247.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_14.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_15.n_239.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_15.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_16.n_225.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_16.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_17.n_208.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_17.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_18.n_202.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_18.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_19.n_189.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_19.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_1.n_442.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_1.n_442.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_20.n_129.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_20.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_21.n_122.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_21.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_22.n_119.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_22.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_23.n_91.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_23.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_24.n_87.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_24.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_25.n_84.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_25.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_26.n_73.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_26.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_27.n_71.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_27.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_28.n_56.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_28.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_29.n_53.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_29.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_2.n_403.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_2.n_403.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_30.n_53.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_30.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_31.n_49.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_31.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_32.n_26.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_32.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_3.n_382.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_3.n_382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_4.n_377.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_4.n_377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_5.n_331.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_5.n_331.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_6.n_322.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_6.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_7.n_313.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_7.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_8.n_298.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_8.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_9.n_281.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_9.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_0.n_1877.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_0.n_1877.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_10.n_135.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_10.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_11.n_124.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_11.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_12.n_123.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_12.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_13.n_118.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_13.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_14.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_15.n_110.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_15.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_16.n_76.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_16.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_17.n_73.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_17.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_18.n_71.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_18.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_19.n_67.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_19.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_1.n_1563.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_1.n_1563.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_20.n_65.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_20.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_21.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_22.n_46.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_22.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_23.n_39.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_23.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_24.n_35.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_24.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_25.n_22.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_25.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_26.n_20.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_26.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_2.n_1261.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_2.n_1261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_3.n_645.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_3.n_645.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_4.n_405.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_4.n_405.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_5.n_360.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_5.n_360.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_6.n_277.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_6.n_277.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_7.n_222.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_7.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_8.n_191.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_8.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_9.n_151.CWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_9.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_10.n_103.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_10.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_11.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_12.n_67.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_12.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_13.n_63.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_13.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_1.n_1237.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_1.n_1237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_2.n_764.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_2.n_764.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_3.n_365.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_3.n_365.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_4.n_348.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_4.n_348.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_5.n_286.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_5.n_286.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_6.n_224.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_6.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_7.n_133.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_7.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_8.n_124.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_8.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_9.n_116.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_9.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_10.n_103.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_10.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_11.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_12.n_67.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_12.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_13.n_63.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_13.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_1.n_1237.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_1.n_1237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_2.n_764.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_2.n_764.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_3.n_365.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_3.n_365.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_4.n_348.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_4.n_348.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_5.n_286.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_5.n_286.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_6.n_224.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_6.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_7.n_133.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_7.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_8.n_124.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_8.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_9.n_116.CWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_9.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_14.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_14.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_14.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_14.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_14.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_14.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_14.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_14.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_0.n_1408.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_0.n_1408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_11.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_1.n_1336.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_1.n_1336.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_2.n_1083.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_2.n_1083.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_3.n_644.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_3.n_644.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_4.n_494.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_4.n_494.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_5.n_351.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_5.n_351.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_6.n_144.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_6.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_7.n_108.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_7.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_8.n_104.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_8.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_9.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_0.n_1367.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_0.n_1367.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_10.n_121.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_10.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_11.n_113.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_11.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_12.n_60.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_12.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_1.n_604.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_1.n_604.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_2.n_420.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_2.n_420.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_3.n_412.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_3.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_4.n_409.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_4.n_409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_5.n_348.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_5.n_348.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_6.n_304.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_6.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_7.n_256.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_7.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_8.n_184.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_8.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_9.n_157.CWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_9.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_0.n_1141.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_0.n_1141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_10.n_95.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_10.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_11.n_93.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_11.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_12.n_69.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_12.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_13.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_14.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_1.n_1090.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_1.n_1090.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_2.n_999.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_2.n_999.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_3.n_711.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_3.n_711.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_4.n_551.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_4.n_551.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_5.n_540.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_5.n_540.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_6.n_423.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_6.n_423.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_7.n_365.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_7.n_365.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_8.n_227.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_8.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_9.n_114.CWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_9.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_10.n_116.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_10.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_11.n_106.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_11.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_12.n_105.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_12.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_13.n_77.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_13.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_14.n_72.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_14.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_15.n_68.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_15.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_16.n_66.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_16.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_17.n_65.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_17.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_18.n_56.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_18.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_19.n_56.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_19.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_1.n_454.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_1.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_20.n_49.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_20.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_21.n_47.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_21.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_22.n_46.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_22.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_23.n_43.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_23.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_24.n_41.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_24.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_25.n_41.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_25.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_26.n_41.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_26.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_27.n_32.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_27.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_2.n_270.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_2.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_3.n_259.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_3.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_4.n_247.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_4.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_5.n_246.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_5.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_6.n_218.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_6.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_7.n_189.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_7.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_8.n_157.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_8.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_9.n_130.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_9.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_10.n_116.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_10.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_11.n_106.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_11.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_12.n_105.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_12.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_13.n_77.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_13.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_14.n_72.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_14.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_15.n_68.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_15.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_16.n_66.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_16.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_17.n_65.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_17.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_18.n_56.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_18.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_19.n_56.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_19.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_1.n_454.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_1.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_20.n_49.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_20.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_21.n_47.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_21.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_22.n_46.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_22.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_23.n_43.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_23.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_24.n_41.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_24.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_25.n_41.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_25.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_26.n_41.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_26.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_27.n_32.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_27.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_2.n_270.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_2.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_3.n_259.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_3.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_4.n_247.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_4.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_5.n_246.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_5.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_6.n_218.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_6.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_7.n_189.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_7.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_8.n_157.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_8.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_9.n_130.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_9.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_0.n_13953.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_0.n_13953.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_10.n_59.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_10.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_11.n_49.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_11.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_12.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_1.n_2096.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_1.n_2096.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_2.n_1363.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_2.n_1363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_3.n_1268.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_3.n_1268.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_4.n_1142.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_4.n_1142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_5.n_544.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_5.n_544.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_6.n_412.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_6.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_7.n_308.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_7.n_308.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_8.n_144.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_8.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_9.n_110.CWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_9.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_0.n_298.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_0.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_10.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_11.n_71.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_11.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_12.n_67.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_12.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_13.n_58.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_13.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_14.n_58.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_14.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_15.n_48.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_15.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_17.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_18.n_22.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_18.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_1.n_234.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_1.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_2.n_205.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_2.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_3.n_134.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_3.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_4.n_115.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_4.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_5.n_109.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_5.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_6.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_7.n_85.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_7.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_8.n_83.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_8.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_9.n_82.CWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_9.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_0.n_2392.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_0.n_2392.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_10.n_181.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_10.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_11.n_78.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_11.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_12.n_57.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_12.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_13.n_51.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_13.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_14.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_15.n_29.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_15.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_16.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_1.n_2283.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_1.n_2283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_2.n_1651.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_2.n_1651.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_3.n_1468.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_3.n_1468.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_4.n_1073.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_4.n_1073.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_5.n_834.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_5.n_834.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_6.n_815.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_6.n_815.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_7.n_697.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_7.n_697.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_8.n_578.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_8.n_578.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_9.n_294.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_9.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_0.n_1783.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_0.n_1783.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_10.n_109.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_10.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_11.n_71.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_11.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_12.n_58.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_12.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_13.n_53.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_13.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_14.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_16.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_1.n_704.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_1.n_704.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_2.n_413.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_2.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_3.n_319.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_3.n_319.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_4.n_314.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_4.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_5.n_206.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_5.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_6.n_197.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_6.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_7.n_183.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_7.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_8.n_152.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_8.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_9.n_125.CWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_9.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_0.n_232.CWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_0.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_1.n_187.CWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_1.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_2.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_3.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_4.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_0.n_397.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_0.n_397.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_1.n_274.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_1.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_2.n_138.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_2.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_3.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_4.n_25.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_4.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_5.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_0.n_397.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_0.n_397.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_1.n_274.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_1.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_2.n_138.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_2.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_3.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_4.n_25.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_4.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_5.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_10.n_50.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_10.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_11.n_46.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_11.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_12.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_13.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_14.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_1.n_699.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_1.n_699.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_2.n_666.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_2.n_666.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_4.n_401.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_4.n_401.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_5.n_316.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_5.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_6.n_273.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_6.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_7.n_271.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_7.n_271.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_8.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_10.n_348.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_10.n_348.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_11.n_314.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_11.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_12.n_300.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_12.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_13.n_220.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_13.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_14.n_219.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_14.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_15.n_215.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_15.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_16.n_215.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_16.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_17.n_189.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_17.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_18.n_184.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_18.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_19.n_132.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_19.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_1.n_2735.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_1.n_2735.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_20.n_83.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_20.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_21.n_79.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_21.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_22.n_78.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_22.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_23.n_51.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_23.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_24.n_43.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_24.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_25.n_29.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_25.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_26.n_28.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_26.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_27.n_28.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_27.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_28.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_28.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_2.n_1038.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_2.n_1038.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_3.n_512.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_3.n_512.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_4.n_461.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_4.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_5.n_435.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_5.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_6.n_424.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_6.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_7.n_387.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_7.n_387.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_8.n_384.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_8.n_384.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_9.n_362.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_9.n_362.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_10.n_50.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_10.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_11.n_46.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_11.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_12.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_13.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_14.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_1.n_699.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_1.n_699.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_2.n_666.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_2.n_666.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_3.n_511.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_3.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_4.n_401.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_4.n_401.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_5.n_316.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_5.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_6.n_273.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_6.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_7.n_271.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_7.n_271.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_8.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_10.n_348.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_10.n_348.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_11.n_314.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_11.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_12.n_300.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_12.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_13.n_220.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_13.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_14.n_219.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_14.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_15.n_215.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_15.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_16.n_215.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_16.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_17.n_189.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_17.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_18.n_184.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_18.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_19.n_132.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_19.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_1.n_2735.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_1.n_2735.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_20.n_83.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_20.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_21.n_79.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_21.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_22.n_78.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_22.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_23.n_51.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_23.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_24.n_43.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_24.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_25.n_29.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_25.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_26.n_28.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_26.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_27.n_28.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_27.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_28.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_28.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_2.n_1038.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_2.n_1038.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_3.n_512.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_3.n_512.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_4.n_461.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_4.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_5.n_435.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_5.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_6.n_424.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_6.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_7.n_387.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_7.n_387.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_8.n_384.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_8.n_384.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_9.n_362.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_9.n_362.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_0.n_3381.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_0.n_3381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_10.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_11.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_12.n_72.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_12.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_13.n_71.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_13.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_14.n_69.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_14.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_15.n_58.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_15.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_17.n_31.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_17.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_18.n_24.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_18.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_1.n_1228.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_1.n_1228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_2.n_1160.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_2.n_1160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_3.n_853.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_3.n_853.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_4.n_780.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_4.n_780.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_5.n_342.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_5.n_342.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_6.n_291.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_6.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_7.n_253.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_7.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_8.n_99.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_8.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_9.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_0.n_6342.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_0.n_6342.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_10.n_93.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_10.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_11.n_81.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_11.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_12.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_13.n_37.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_13.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_1.n_656.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_1.n_656.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_2.n_564.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_2.n_564.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_3.n_486.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_3.n_486.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_4.n_278.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_4.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_5.n_268.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_5.n_268.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_6.n_222.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_6.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_7.n_135.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_7.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_8.n_115.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_8.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_9.n_108.CWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_9.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_0.n_2375.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_0.n_2375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_10.n_152.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_10.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_11.n_141.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_11.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_12.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_13.n_67.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_13.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_14.n_54.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_14.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_16.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_17.n_35.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_17.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_18.n_28.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_18.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_19.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_1.n_489.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_1.n_489.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_20.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_2.n_467.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_2.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_3.n_459.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_3.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_4.n_442.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_4.n_442.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_5.n_437.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_5.n_437.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_6.n_321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_7.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_8.n_173.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_8.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_9.n_159.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_9.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_0.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_10.n_64.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_10.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_11.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_12.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_13.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_14.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_16.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_17.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_1.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_2.n_165.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_2.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_3.n_144.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_3.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_4.n_136.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_4.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_5.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_6.n_118.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_6.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_7.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_8.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_9.n_84.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_9.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_10.n_33.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_10.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_11.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_12.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_13.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_14.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_1.n_122.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_1.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_2.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_3.n_82.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_3.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_4.n_69.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_4.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_6.n_60.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_6.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_7.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_8.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_9.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_0.n_2375.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_0.n_2375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_10.n_152.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_10.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_11.n_141.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_11.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_12.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_13.n_67.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_13.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_14.n_54.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_14.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_16.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_17.n_35.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_17.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_18.n_28.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_18.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_19.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_1.n_489.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_1.n_489.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_20.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_2.n_467.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_2.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_3.n_459.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_3.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_4.n_442.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_4.n_442.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_5.n_437.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_5.n_437.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_6.n_321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_7.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_8.n_173.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_8.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_9.n_159.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_9.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_0.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_10.n_64.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_10.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_11.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_12.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_13.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_14.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_16.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_17.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_1.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_2.n_165.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_2.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_3.n_144.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_3.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_4.n_136.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_4.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_5.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_6.n_118.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_6.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_7.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_8.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_9.n_84.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_9.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_10.n_33.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_10.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_11.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_12.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_13.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_14.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_1.n_122.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_1.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_2.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_3.n_82.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_3.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_4.n_69.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_4.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_6.n_60.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_6.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_7.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_8.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_9.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_0.n_8425.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_0.n_8425.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_1.n_978.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_1.n_978.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_2.n_523.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_2.n_523.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_3.n_317.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_3.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_4.n_251.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_4.n_251.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_5.n_123.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_5.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_6.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_7.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_8.n_37.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_8.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_9.n_37.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_9.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_0.n_351.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_0.n_351.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_10.n_69.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_10.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_11.n_62.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_11.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_12.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_13.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_14.n_54.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_14.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_15.n_46.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_15.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_16.n_46.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_16.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_17.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_18.n_44.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_18.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_19.n_43.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_19.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_1.n_162.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_1.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_20.n_37.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_20.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_21.n_35.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_21.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_22.n_33.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_22.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_23.n_33.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_23.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_24.n_31.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_24.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_25.n_28.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_25.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_26.n_28.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_26.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_27.n_27.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_27.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_28.n_20.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_28.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_2.n_160.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_2.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_3.n_143.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_3.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_4.n_127.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_4.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_5.n_125.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_5.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_6.n_78.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_6.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_7.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_8.n_73.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_8.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_9.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_10.n_100.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_10.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_11.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_12.n_95.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_12.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_13.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_14.n_88.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_14.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_15.n_81.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_15.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_16.n_79.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_16.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_17.n_68.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_17.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_18.n_59.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_18.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_19.n_59.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_19.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_1.n_235.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_1.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_20.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_21.n_51.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_21.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_22.n_51.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_22.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_23.n_32.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_23.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_2.n_194.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_2.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_3.n_185.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_3.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_4.n_139.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_4.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_5.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_6.n_118.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_6.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_8.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_10.n_100.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_10.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_11.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_12.n_95.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_12.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_13.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_14.n_88.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_14.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_15.n_81.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_15.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_16.n_79.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_16.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_17.n_68.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_17.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_18.n_59.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_18.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_19.n_59.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_19.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_1.n_235.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_1.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_20.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_21.n_51.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_21.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_22.n_51.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_22.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_23.n_32.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_23.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_2.n_194.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_2.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_3.n_185.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_3.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_4.n_139.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_4.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_5.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_6.n_118.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_6.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_8.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_0.n_1391.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_0.n_1391.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_10.n_198.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_10.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_11.n_110.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_11.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_12.n_95.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_12.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_13.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_13.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_14.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_17.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_18.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_1.n_1210.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_1.n_1210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_2.n_609.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_2.n_609.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_3.n_374.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_3.n_374.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_4.n_347.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_4.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_5.n_336.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_5.n_336.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_6.n_308.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_6.n_308.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_7.n_283.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_7.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_8.n_219.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_8.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_9.n_203.CWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_9.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_0.n_2746.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_0.n_2746.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_1.n_2101.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_1.n_2101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_2.n_720.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_2.n_720.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_3.n_687.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_3.n_687.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_4.n_257.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_4.n_257.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_5.n_143.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_5.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_6.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_7.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_0.n_3604.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_0.n_3604.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_10.n_238.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_10.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_11.n_238.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_11.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_12.n_185.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_12.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_13.n_174.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_13.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_14.n_167.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_14.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_15.n_145.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_15.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_16.n_134.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_16.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_17.n_111.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_17.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_18.n_101.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_18.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_19.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_19.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_1.n_2631.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_1.n_2631.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_20.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_20.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_21.n_44.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_21.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_22.n_33.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_22.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_23.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_24.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_25.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_25.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_2.n_1127.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_2.n_1127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_3.n_837.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_3.n_837.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_4.n_694.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_4.n_694.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_5.n_410.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_5.n_410.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_6.n_357.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_6.n_357.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_7.n_348.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_7.n_348.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_8.n_315.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_8.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_9.n_260.CWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_9.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_0.n_12413.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_0.n_12413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_10.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_11.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_12.n_33.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_12.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_13.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_1.n_588.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_1.n_588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_2.n_415.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_2.n_415.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_3.n_280.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_3.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_4.n_253.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_4.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_5.n_148.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_5.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_6.n_141.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_6.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_7.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_7.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_8.n_112.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_8.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_9.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_9.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_0.n_749.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_0.n_749.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_10.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_10.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_11.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_11.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_1.n_199.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_1.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_2.n_157.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_2.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_3.n_96.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_3.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_4.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_5.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_6.n_71.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_6.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_7.n_65.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_7.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_8.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_9.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_9.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_0.n_1088.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_0.n_1088.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_10.n_71.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_10.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_11.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_11.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_12.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_12.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_13.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_14.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_1.n_495.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_1.n_495.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_2.n_429.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_2.n_429.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_3.n_209.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_3.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_4.n_202.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_4.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_5.n_143.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_5.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_6.n_110.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_6.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_7.n_101.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_7.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_8.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_9.n_90.CWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_9.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_0.n_706.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_0.n_706.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_10.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_10.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_11.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_12.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_1.n_271.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_1.n_271.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_2.n_156.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_2.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_3.n_118.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_3.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_4.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_4.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_5.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_5.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_6.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_6.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_7.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_8.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_9.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_9.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_0.n_3265.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_0.n_3265.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_10.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_10.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_12.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_12.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_13.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_14.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_1.n_1861.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_1.n_1861.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_2.n_1696.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_2.n_1696.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_3.n_517.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_3.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_4.n_317.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_4.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_5.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_6.n_205.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_6.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_7.n_187.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_7.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_8.n_145.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_8.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_9.n_144.CWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_9.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_0.n_2870.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_0.n_2870.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_10.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_11.n_65.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_11.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_12.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_12.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_13.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_14.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_14.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_1.n_1099.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_1.n_1099.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_2.n_715.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_2.n_715.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_3.n_488.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_3.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_4.n_218.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_4.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_5.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_5.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_6.n_133.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_6.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_7.n_122.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_7.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_8.n_115.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_8.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_9.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_0.n_1764.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_0.n_1764.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_1.n_343.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_1.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_2.n_191.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_2.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_3.n_176.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_3.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_4.n_171.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_4.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_5.n_151.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_5.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_6.n_141.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_6.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_7.n_104.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_7.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_8.n_89.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_8.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_0.n_236.CWM.meme motif-alignments-all-vs-all/ZNF155/ZNF155-201-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_0.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_1.n_198.CWM.meme motif-alignments-all-vs-all/ZNF155/ZNF155-201-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_1.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZNF155/ZNF155-201-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_2.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF155/ZNF155-201-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_0.n_6934.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_0.n_6934.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_10.n_77.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_10.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_11.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_12.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_13.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_1.n_5952.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_1.n_5952.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_2.n_2356.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_2.n_2356.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_3.n_1819.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_3.n_1819.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_4.n_441.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_4.n_441.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_5.n_434.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_5.n_434.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_6.n_315.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_6.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_7.n_252.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_7.n_252.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_8.n_222.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_8.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_9.n_215.CWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_9.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_0.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_10.n_185.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_10.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_11.n_158.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_11.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_12.n_145.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_12.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_13.n_145.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_13.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_14.n_140.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_14.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_15.n_109.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_15.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_16.n_98.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_16.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_17.n_97.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_17.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_18.n_81.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_18.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_19.n_42.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_19.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_1.n_496.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_1.n_496.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_20.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_21.n_26.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_21.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_2.n_462.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_2.n_462.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_3.n_395.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_3.n_395.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_4.n_316.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_4.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_5.n_309.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_5.n_309.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_6.n_304.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_6.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_7.n_280.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_7.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_8.n_246.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_8.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_9.n_204.CWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_9.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_1.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_2.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_3.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_1.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_2.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_3.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_0.n_546.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_0.n_546.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_1.n_532.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_1.n_532.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_2.n_370.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_2.n_370.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_3.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_4.n_68.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_4.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_5.n_54.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_5.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_6.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_7.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_8.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_0.n_2732.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_0.n_2732.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_10.n_428.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_10.n_428.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_11.n_252.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_11.n_252.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_12.n_232.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_12.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_13.n_173.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_13.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_14.n_111.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_14.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_15.n_99.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_15.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_16.n_58.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_16.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_17.n_38.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_17.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_18.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_1.n_2626.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_1.n_2626.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_2.n_1959.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_2.n_1959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_3.n_1548.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_3.n_1548.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_4.n_1443.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_4.n_1443.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_5.n_962.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_5.n_962.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_6.n_852.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_6.n_852.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_7.n_547.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_7.n_547.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_8.n_488.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_8.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_9.n_446.CWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_9.n_446.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_0.n_269.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_0.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_1.n_119.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_1.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_2.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_3.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_4.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_6.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_7.n_47.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_7.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_8.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_10.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_11.n_62.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_11.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_12.n_38.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_12.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_1.n_3488.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_1.n_3488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_2.n_462.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_2.n_462.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_3.n_384.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_3.n_384.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_4.n_376.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_4.n_376.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_5.n_181.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_5.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_6.n_159.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_6.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_7.n_159.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_7.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_8.n_117.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_8.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_9.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_10.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_11.n_62.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_11.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_12.n_38.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_12.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_1.n_3488.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_1.n_3488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_2.n_462.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_2.n_462.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_3.n_384.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_3.n_384.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_4.n_376.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_4.n_376.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_5.n_181.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_5.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_6.n_159.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_6.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_7.n_159.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_7.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_8.n_117.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_8.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_9.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_0.n_2097.CWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_0.n_2097.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_10.n_93.CWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_10.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_1.n_402.CWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_1.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_2.n_256.CWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_2.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_3.n_240.CWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_3.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_4.n_221.CWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_4.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_5.n_215.CWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_5.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_6.n_204.CWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_6.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_7.n_194.CWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_7.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_8.n_141.CWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_8.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_9.n_114.CWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_9.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_0.n_2133.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_0.n_2133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_10.n_358.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_10.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_11.n_355.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_11.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_12.n_347.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_12.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_13.n_327.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_13.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_14.n_322.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_14.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_15.n_318.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_15.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_16.n_231.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_16.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_17.n_190.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_17.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_18.n_175.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_18.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_19.n_145.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_19.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_1.n_1711.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_1.n_1711.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_20.n_144.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_20.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_21.n_123.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_21.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_22.n_117.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_22.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_23.n_83.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_23.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_24.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_24.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_25.n_43.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_25.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_26.n_42.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_26.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_27.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_27.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_28.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_28.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_29.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_29.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_2.n_1367.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_2.n_1367.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_3.n_1056.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_3.n_1056.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_4.n_737.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_4.n_737.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_5.n_585.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_5.n_585.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_6.n_453.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_6.n_453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_7.n_432.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_7.n_432.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_8.n_403.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_8.n_403.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_9.n_360.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_9.n_360.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_0.n_2133.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_0.n_2133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_10.n_358.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_10.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_11.n_355.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_11.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_12.n_347.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_12.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_13.n_327.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_13.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_14.n_322.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_14.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_15.n_318.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_15.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_16.n_231.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_16.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_17.n_190.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_17.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_18.n_175.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_18.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_19.n_145.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_19.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_1.n_1711.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_1.n_1711.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_20.n_144.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_20.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_21.n_123.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_21.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_22.n_117.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_22.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_23.n_83.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_23.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_24.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_24.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_25.n_43.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_25.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_26.n_42.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_26.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_27.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_27.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_28.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_28.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_29.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_29.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_2.n_1367.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_2.n_1367.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_3.n_1056.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_3.n_1056.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_4.n_737.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_4.n_737.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_5.n_585.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_5.n_585.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_6.n_453.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_6.n_453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_7.n_432.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_7.n_432.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_8.n_403.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_8.n_403.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_9.n_360.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_9.n_360.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_0.n_2133.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_0.n_2133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_10.n_358.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_10.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_11.n_355.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_11.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_12.n_347.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_12.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_13.n_327.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_13.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_14.n_322.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_14.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_15.n_318.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_15.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_16.n_231.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_16.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_17.n_190.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_17.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_18.n_175.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_18.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_19.n_145.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_19.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_1.n_1711.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_1.n_1711.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_20.n_144.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_20.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_21.n_123.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_21.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_22.n_117.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_22.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_23.n_83.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_23.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_24.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_24.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_25.n_43.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_25.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_26.n_42.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_26.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_27.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_27.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_28.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_28.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_29.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_29.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_2.n_1367.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_2.n_1367.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_3.n_1056.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_3.n_1056.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_4.n_737.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_4.n_737.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_5.n_585.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_5.n_585.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_6.n_453.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_6.n_453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_7.n_432.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_7.n_432.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_8.n_403.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_8.n_403.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_9.n_360.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_9.n_360.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_0.n_8526.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_0.n_8526.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_10.n_91.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_10.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_11.n_90.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_11.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_12.n_61.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_12.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_13.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_14.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_15.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_16.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_1.n_2097.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_1.n_2097.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_2.n_885.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_2.n_885.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_3.n_500.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_3.n_500.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_4.n_484.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_4.n_484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_5.n_446.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_5.n_446.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_6.n_417.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_6.n_417.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_7.n_292.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_7.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_8.n_232.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_8.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_9.n_178.CWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_9.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_0.n_14335.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_0.n_14335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_10.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_11.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_12.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_13.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_14.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_15.n_43.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_15.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_16.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_17.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_1.n_2220.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_1.n_2220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_2.n_1363.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_2.n_1363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_3.n_661.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_3.n_661.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_4.n_643.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_4.n_643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_5.n_428.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_5.n_428.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_6.n_352.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_6.n_352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_7.n_91.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_7.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_8.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_9.n_84.CWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_9.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_0.n_492.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_0.n_492.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_12.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_1.n_225.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_1.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_2.n_158.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_2.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_3.n_156.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_3.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_4.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_4.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_5.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_5.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_6.n_73.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_6.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_8.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_8.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_9.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_10.n_492.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_10.n_492.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_11.n_282.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_11.n_282.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_12.n_277.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_12.n_277.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_13.n_228.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_13.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_14.n_218.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_14.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_15.n_208.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_15.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_16.n_156.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_16.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_17.n_105.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_17.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_18.n_85.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_18.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_19.n_70.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_19.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_1.n_3272.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_1.n_3272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_20.n_69.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_20.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_21.n_63.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_21.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_22.n_56.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_22.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_23.n_50.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_23.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_24.n_41.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_24.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_25.n_30.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_25.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_26.n_22.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_26.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_2.n_2348.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_2.n_2348.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_3.n_2007.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_3.n_2007.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_4.n_1633.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_4.n_1633.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_5.n_1203.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_5.n_1203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_6.n_1197.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_6.n_1197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_7.n_931.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_7.n_931.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_8.n_831.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_8.n_831.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_9.n_644.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_9.n_644.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_10.n_492.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_10.n_492.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_11.n_282.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_11.n_282.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_12.n_277.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_12.n_277.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_13.n_228.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_13.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_14.n_218.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_14.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_15.n_208.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_15.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_16.n_156.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_16.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_17.n_105.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_17.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_18.n_85.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_18.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_19.n_70.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_19.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_1.n_3272.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_1.n_3272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_20.n_69.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_20.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_21.n_63.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_21.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_22.n_56.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_22.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_23.n_50.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_23.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_24.n_41.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_24.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_25.n_30.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_25.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_26.n_22.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_26.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_2.n_2348.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_2.n_2348.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_3.n_2007.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_3.n_2007.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_4.n_1633.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_4.n_1633.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_5.n_1203.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_5.n_1203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_6.n_1197.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_6.n_1197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_7.n_931.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_7.n_931.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_8.n_831.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_8.n_831.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_9.n_644.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_9.n_644.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_1.n_1465.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_1.n_1465.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_20.n_409.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_20.n_409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_21.n_383.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_21.n_383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_22.n_368.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_22.n_368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_23.n_357.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_23.n_357.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_24.n_347.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_24.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_25.n_329.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_25.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_28.n_247.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_28.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_38.n_33.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_38.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_4.n_1072.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_4.n_1072.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_5.n_857.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_5.n_857.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_6.n_831.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_6.n_831.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_7.n_821.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_7.n_821.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_8.n_820.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_8.n_820.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_9.n_762.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_9.n_762.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_0.n_176.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_0.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_10.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_11.n_37.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_11.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_12.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_1.n_164.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_1.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_2.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_3.n_124.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_3.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_4.n_103.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_4.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_0.n_54.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_0.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_1.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_2.n_39.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_2.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_3.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_7.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_0.n_1246.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_0.n_1246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_1.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_2.n_56.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_2.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_0.n_8249.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_0.n_8249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_10.n_44.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_10.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_1.n_386.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_1.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_2.n_266.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_2.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_3.n_230.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_3.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_4.n_221.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_4.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_5.n_126.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_5.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_6.n_72.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_6.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_7.n_62.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_7.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_8.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_9.n_48.CWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_9.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_0.n_502.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_0.n_502.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_10.n_141.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_10.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_11.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_12.n_126.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_12.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_13.n_123.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_13.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_14.n_117.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_14.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_15.n_115.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_15.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_16.n_95.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_16.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_17.n_95.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_17.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_18.n_94.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_18.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_19.n_74.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_19.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_1.n_435.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_1.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_20.n_66.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_20.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_21.n_55.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_21.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_22.n_54.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_22.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_23.n_53.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_23.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_24.n_51.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_24.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_2.n_381.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_2.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_3.n_350.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_3.n_350.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_4.n_330.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_4.n_330.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_5.n_295.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_5.n_295.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_6.n_294.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_6.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_7.n_266.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_7.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_8.n_225.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_8.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_9.n_171.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_9.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_0.n_834.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_0.n_834.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_1.n_673.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_1.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_2.n_241.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_2.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_3.n_177.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_3.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_4.n_103.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_4.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_5.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_6.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_8.n_48.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_8.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_9.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_10.n_109.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_10.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_11.n_103.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_11.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_12.n_94.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_12.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_13.n_79.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_13.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_14.n_78.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_14.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_15.n_70.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_15.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_16.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_17.n_52.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_17.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_18.n_49.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_18.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_19.n_47.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_19.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_1.n_786.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_1.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_20.n_42.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_20.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_21.n_28.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_21.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_22.n_21.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_22.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_23.n_20.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_23.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_2.n_527.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_2.n_527.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_3.n_276.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_3.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_4.n_212.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_4.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_5.n_155.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_5.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_6.n_129.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_6.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_7.n_129.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_7.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_8.n_127.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_8.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_9.n_121.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_9.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_0.n_502.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_0.n_502.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_10.n_141.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_10.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_11.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_12.n_126.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_12.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_13.n_123.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_13.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_14.n_117.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_14.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_15.n_115.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_15.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_16.n_95.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_16.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_17.n_95.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_17.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_18.n_94.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_18.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_19.n_74.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_19.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_1.n_435.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_1.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_20.n_66.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_20.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_21.n_55.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_21.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_22.n_54.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_22.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_23.n_53.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_23.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_24.n_51.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_24.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_2.n_381.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_2.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_3.n_350.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_3.n_350.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_4.n_330.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_4.n_330.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_5.n_295.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_5.n_295.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_6.n_294.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_6.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_7.n_266.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_7.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_8.n_225.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_8.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_9.n_171.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_9.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_0.n_834.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_0.n_834.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_1.n_673.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_1.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_2.n_241.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_2.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_3.n_177.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_3.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_4.n_103.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_4.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_5.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_6.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_8.n_48.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_8.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_9.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_10.n_109.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_10.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_11.n_103.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_11.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_12.n_94.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_12.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_13.n_79.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_13.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_14.n_78.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_14.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_15.n_70.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_15.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_16.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_17.n_52.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_17.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_18.n_49.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_18.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_19.n_47.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_19.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_1.n_786.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_1.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_20.n_42.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_20.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_21.n_28.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_21.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_22.n_21.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_22.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_23.n_20.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_23.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_2.n_527.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_2.n_527.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_3.n_276.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_3.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_4.n_212.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_4.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_5.n_155.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_5.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_6.n_129.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_6.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_7.n_129.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_7.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_8.n_127.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_8.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_9.n_121.CWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_9.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_0.n_1042.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_0.n_1042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_10.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_11.n_27.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_11.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_1.n_445.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_1.n_445.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_2.n_291.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_2.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_3.n_119.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_3.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_5.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_6.n_89.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_6.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_7.n_64.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_7.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_8.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_9.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_0.n_217.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_0.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_1.n_169.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_1.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_2.n_73.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_2.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_3.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_0.n_782.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_0.n_782.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_10.n_125.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_10.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_11.n_124.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_11.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_12.n_116.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_12.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_13.n_81.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_13.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_14.n_73.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_14.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_15.n_34.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_15.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_1.n_753.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_1.n_753.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_2.n_742.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_2.n_742.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_3.n_279.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_3.n_279.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_4.n_220.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_4.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_5.n_180.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_5.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_6.n_179.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_6.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_7.n_158.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_7.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_8.n_143.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_8.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_9.n_141.CWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_9.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_0.n_2050.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_0.n_2050.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_1.n_1533.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_1.n_1533.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_2.n_1487.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_2.n_1487.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_3.n_522.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_3.n_522.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_4.n_232.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_4.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_5.n_90.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_5.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_6.n_81.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_6.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_7.n_47.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_7.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_8.n_46.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_8.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_9.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_0.n_8555.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_0.n_8555.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_10.n_39.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_10.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_11.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_1.n_4959.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_1.n_4959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_2.n_4422.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_2.n_4422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_3.n_4022.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_3.n_4022.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_4.n_695.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_4.n_695.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_5.n_588.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_5.n_588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_6.n_522.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_6.n_522.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_7.n_447.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_7.n_447.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_8.n_391.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_8.n_391.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_9.n_359.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_9.n_359.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_0.n_612.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_0.n_612.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_10.n_148.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_10.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_11.n_128.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_11.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_12.n_92.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_12.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_13.n_77.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_13.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_14.n_73.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_14.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_15.n_71.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_15.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_16.n_65.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_16.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_17.n_50.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_17.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_18.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_19.n_30.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_19.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_1.n_264.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_1.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_2.n_231.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_2.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_3.n_224.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_3.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_4.n_209.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_4.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_5.n_207.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_5.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_6.n_191.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_6.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_7.n_170.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_7.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_8.n_163.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_8.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_9.n_153.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_9.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_0.n_719.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_0.n_719.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_10.n_86.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_10.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_11.n_70.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_11.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_12.n_52.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_12.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_13.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_14.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_15.n_36.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_15.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_16.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_17.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_18.n_28.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_18.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_19.n_28.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_19.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_1.n_424.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_1.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_20.n_25.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_20.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_21.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_22.n_20.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_22.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_2.n_212.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_2.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_3.n_180.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_3.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_4.n_162.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_4.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_5.n_140.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_5.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_6.n_125.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_6.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_7.n_117.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_7.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_8.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_9.n_91.CWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_9.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_0.n_458.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_0.n_458.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_10.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_11.n_37.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_11.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_12.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_14.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_1.n_279.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_1.n_279.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_2.n_96.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_2.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_3.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_4.n_93.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_4.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_5.n_81.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_5.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_6.n_81.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_6.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_7.n_75.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_7.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_8.n_73.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_8.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_9.n_66.CWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_9.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_0.n_460.CWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_0.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_1.n_120.CWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_1.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_2.n_94.CWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_2.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_3.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_4.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_5.n_42.CWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_5.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_6.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_0.n_2402.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_0.n_2402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_10.n_285.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_10.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_11.n_261.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_11.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_12.n_228.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_12.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_13.n_182.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_13.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_14.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_15.n_36.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_15.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_16.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_1.n_1781.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_1.n_1781.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_2.n_1090.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_2.n_1090.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_3.n_908.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_3.n_908.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_4.n_877.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_4.n_877.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_5.n_864.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_5.n_864.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_6.n_820.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_6.n_820.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_7.n_524.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_7.n_524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_8.n_326.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_8.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_9.n_300.CWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_9.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_0.n_2600.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_0.n_2600.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_10.n_113.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_10.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_11.n_113.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_11.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_12.n_97.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_12.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_13.n_83.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_13.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_14.n_74.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_14.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_15.n_35.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_15.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_16.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_17.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_18.n_32.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_18.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_19.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_1.n_471.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_1.n_471.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_2.n_413.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_2.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_3.n_409.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_3.n_409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_4.n_344.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_4.n_344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_5.n_252.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_5.n_252.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_6.n_187.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_6.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_7.n_170.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_7.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_8.n_159.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_8.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_9.n_124.CWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_9.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_3.n_2220.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_3.n_2220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_6.n_571.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_6.n_571.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_8.n_305.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_8.n_305.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_9.n_211.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_9.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_3.n_2220.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_3.n_2220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_6.n_571.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_6.n_571.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_8.n_305.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_8.n_305.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_9.n_211.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_9.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_3.n_2220.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_3.n_2220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_6.n_571.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_6.n_571.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_8.n_305.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_8.n_305.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_9.n_211.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_9.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_3.n_2220.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_3.n_2220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_6.n_571.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_6.n_571.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_8.n_305.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_8.n_305.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_9.n_211.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_9.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.CWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_0.n_1999.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_0.n_1999.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_10.n_143.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_10.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_11.n_136.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_11.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_12.n_112.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_12.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_13.n_101.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_13.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_14.n_93.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_14.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_15.n_90.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_15.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_16.n_65.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_16.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_17.n_59.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_17.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_18.n_52.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_18.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_19.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_1.n_1370.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_1.n_1370.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_20.n_47.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_20.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_21.n_36.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_21.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_22.n_33.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_22.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_2.n_689.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_2.n_689.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_3.n_594.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_3.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_4.n_514.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_4.n_514.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_5.n_483.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_5.n_483.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_6.n_330.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_6.n_330.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_7.n_273.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_7.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_8.n_167.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_8.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_9.n_146.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_9.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_0.n_1999.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_0.n_1999.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_10.n_143.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_10.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_11.n_136.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_11.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_12.n_112.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_12.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_13.n_101.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_13.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_14.n_93.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_14.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_15.n_90.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_15.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_16.n_65.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_16.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_17.n_59.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_17.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_18.n_52.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_18.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_19.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_1.n_1370.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_1.n_1370.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_20.n_47.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_20.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_21.n_36.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_21.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_22.n_33.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_22.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_2.n_689.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_2.n_689.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_3.n_594.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_3.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_4.n_514.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_4.n_514.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_5.n_483.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_5.n_483.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_6.n_330.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_6.n_330.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_7.n_273.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_7.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_8.n_167.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_8.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_9.n_146.CWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_9.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_0.n_357.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_0.n_357.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_10.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_1.n_191.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_1.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_2.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_3.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_4.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_5.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_6.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_7.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_9.n_22.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_9.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_0.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_1.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_0.n_1809.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_0.n_1809.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_1.n_38.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_1.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_2.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_0.n_1354.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_0.n_1354.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_1.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_2.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR000FCI.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR000FCI.bestfold.profile.pattern_0.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR000FCI.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR000FCI.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_0.n_1309.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_0.n_1309.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_1.n_105.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_1.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_2.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_3.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_0.n_372.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_0.n_372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_1.n_223.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_1.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_2.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_3.n_49.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_3.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_4.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_5.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR000EVR.bestfold.profile.pattern_0.n_532.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR000EVR.bestfold.profile.pattern_0.n_532.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR000EVR.bestfold.profile.pattern_1.n_82.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR000EVR.bestfold.profile.pattern_1.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_0.n_1773.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_0.n_1773.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_10.n_170.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_10.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_11.n_164.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_11.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_12.n_144.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_12.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_13.n_134.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_13.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_14.n_132.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_14.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_15.n_129.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_15.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_16.n_118.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_16.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_17.n_109.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_17.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_18.n_104.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_18.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_19.n_90.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_19.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_1.n_1578.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_1.n_1578.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_20.n_85.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_20.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_21.n_82.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_21.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_22.n_81.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_22.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_23.n_74.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_23.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_24.n_72.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_24.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_25.n_56.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_25.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_26.n_42.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_26.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_27.n_27.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_27.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_28.n_24.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_28.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_2.n_1263.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_2.n_1263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_3.n_1238.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_3.n_1238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_4.n_385.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_4.n_385.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_5.n_324.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_5.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_6.n_319.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_6.n_319.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_7.n_316.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_7.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_8.n_302.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_8.n_302.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_9.n_199.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_9.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_0.n_956.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_0.n_956.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_1.n_344.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_1.n_344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_2.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_3.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_4.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EWE.bestfold.profile.pattern_0.n_280.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EWE.bestfold.profile.pattern_0.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_0.n_1114.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_0.n_1114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_1.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_2.n_100.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_2.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_3.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_0.n_3169.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_0.n_3169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_10.n_672.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_10.n_672.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_11.n_558.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_11.n_558.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_12.n_546.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_12.n_546.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_13.n_334.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_13.n_334.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_14.n_313.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_14.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_15.n_172.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_15.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_16.n_60.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_16.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_17.n_55.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_17.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_18.n_42.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_18.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_19.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_1.n_2534.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_1.n_2534.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_2.n_2407.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_2.n_2407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_3.n_1983.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_3.n_1983.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_4.n_1962.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_4.n_1962.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_5.n_1899.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_5.n_1899.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_6.n_1204.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_6.n_1204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_7.n_1095.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_7.n_1095.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_8.n_1080.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_8.n_1080.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_9.n_729.CWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_9.n_729.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_0.n_6265.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_0.n_6265.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_10.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_10.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_11.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_12.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_13.n_36.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_13.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_1.n_4237.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_1.n_4237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_2.n_3975.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_2.n_3975.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_3.n_3694.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_3.n_3694.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_4.n_931.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_4.n_931.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_5.n_630.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_5.n_630.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_6.n_598.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_6.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_7.n_171.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_7.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_8.n_110.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_8.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_9.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_0.n_3505.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_0.n_3505.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_10.n_180.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_10.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_11.n_146.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_11.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_12.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_12.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_13.n_133.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_13.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_14.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_15.n_114.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_15.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_16.n_88.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_16.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_17.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_17.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_18.n_36.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_18.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_19.n_33.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_19.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_1.n_2318.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_1.n_2318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_20.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_20.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_21.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_22.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_22.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_2.n_1446.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_2.n_1446.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_3.n_1326.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_3.n_1326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_4.n_810.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_4.n_810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_5.n_754.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_5.n_754.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_6.n_441.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_6.n_441.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_7.n_347.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_7.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_8.n_297.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_8.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_9.n_236.CWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_9.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_0.n_10300.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_0.n_10300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_1.n_2981.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_1.n_2981.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_2.n_1002.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_2.n_1002.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_3.n_988.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_3.n_988.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_4.n_553.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_4.n_553.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_5.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_5.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_6.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_6.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_7.n_136.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_7.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_8.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_8.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_9.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_9.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_0.n_3180.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_0.n_3180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_10.n_188.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_10.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_11.n_136.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_11.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_12.n_126.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_12.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_14.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_16.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_1.n_2238.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_1.n_2238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_2.n_912.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_2.n_912.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_3.n_906.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_3.n_906.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_4.n_820.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_4.n_820.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_5.n_621.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_5.n_621.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_6.n_468.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_6.n_468.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_7.n_335.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_7.n_335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_8.n_253.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_8.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_9.n_237.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_9.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_0.n_1008.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_0.n_1008.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_10.n_109.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_10.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_11.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_11.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_12.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_12.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_13.n_56.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_13.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_14.n_56.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_14.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_15.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_16.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_17.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_18.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_1.n_961.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_1.n_961.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_2.n_451.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_2.n_451.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_3.n_337.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_3.n_337.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_4.n_270.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_4.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_5.n_269.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_5.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_6.n_228.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_6.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_7.n_163.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_7.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_8.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_8.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_9.n_121.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_9.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_0.n_10300.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_0.n_10300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_1.n_2981.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_1.n_2981.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_2.n_1002.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_2.n_1002.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_3.n_988.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_3.n_988.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_4.n_553.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_4.n_553.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_5.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_5.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_6.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_6.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_7.n_136.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_7.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_8.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_8.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_9.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_9.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_0.n_3180.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_0.n_3180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_10.n_188.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_10.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_11.n_136.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_11.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_12.n_126.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_12.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_14.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_16.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_1.n_2238.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_1.n_2238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_2.n_912.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_2.n_912.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_3.n_906.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_3.n_906.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_4.n_820.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_4.n_820.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_5.n_621.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_5.n_621.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_6.n_468.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_6.n_468.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_7.n_335.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_7.n_335.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_8.n_253.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_8.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_9.n_237.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_9.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_0.n_1008.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_0.n_1008.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_10.n_109.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_10.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_11.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_11.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_12.n_93.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_12.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_13.n_56.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_13.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_14.n_56.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_14.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_15.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_16.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_17.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_18.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_1.n_961.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_1.n_961.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_2.n_451.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_2.n_451.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_3.n_337.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_3.n_337.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_4.n_270.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_4.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_5.n_269.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_5.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_6.n_228.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_6.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_7.n_163.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_7.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_8.n_151.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_8.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_9.n_121.CWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_9.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_0.n_16430.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_0.n_16430.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_1.n_1740.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_1.n_1740.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_2.n_700.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_2.n_700.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_3.n_364.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_3.n_364.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_4.n_317.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_4.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_5.n_107.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_5.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_6.n_99.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_6.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_7.n_97.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_7.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_8.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_8.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_9.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_0.n_3630.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_0.n_3630.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_10.n_154.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_10.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_11.n_144.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_11.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_12.n_103.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_12.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_13.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_13.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_14.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_14.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_15.n_29.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_15.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_16.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_17.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_18.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_18.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_19.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_19.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_1.n_2387.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_1.n_2387.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_20.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_20.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_2.n_1998.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_2.n_1998.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_3.n_543.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_3.n_543.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_4.n_495.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_4.n_495.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_5.n_438.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_5.n_438.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_6.n_385.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_6.n_385.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_7.n_229.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_7.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_8.n_191.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_8.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_9.n_187.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_9.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_0.n_1604.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_0.n_1604.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_10.n_120.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_10.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_11.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_12.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_12.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_13.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_13.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_15.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_16.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_1.n_1124.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_1.n_1124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_2.n_1096.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_2.n_1096.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_3.n_1062.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_3.n_1062.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_4.n_397.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_4.n_397.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_5.n_280.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_5.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_6.n_215.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_6.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_7.n_199.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_7.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_8.n_136.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_8.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_9.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_0.n_470.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_0.n_470.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_1.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_2.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_3.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_4.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_5.n_54.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_5.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_6.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_7.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_8.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_0.n_2524.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_0.n_2524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_10.n_190.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_10.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_11.n_100.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_11.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_12.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_12.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_13.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_14.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_1.n_1860.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_1.n_1860.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_2.n_1590.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_2.n_1590.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_3.n_1459.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_3.n_1459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_4.n_1263.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_4.n_1263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_5.n_584.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_5.n_584.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_6.n_551.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_6.n_551.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_7.n_416.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_7.n_416.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_8.n_283.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_8.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_9.n_203.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_9.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_0.n_2524.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_0.n_2524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_10.n_190.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_10.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_11.n_100.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_11.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_12.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_12.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_13.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_14.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_1.n_1860.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_1.n_1860.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_2.n_1590.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_2.n_1590.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_3.n_1459.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_3.n_1459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_4.n_1263.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_4.n_1263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_5.n_584.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_5.n_584.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_6.n_551.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_6.n_551.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_7.n_416.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_7.n_416.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_8.n_283.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_8.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_9.n_203.CWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_9.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_0.n_2195.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_0.n_2195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_1.n_387.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_1.n_387.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_2.n_157.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_2.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_3.n_152.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_3.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_4.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_5.n_76.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_5.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_6.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_9.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HEK591-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HEK591-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HEK591-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HEK591-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_0.n_212.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_0.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_10.n_34.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_10.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_11.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_12.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_13.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_1.n_164.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_1.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_2.n_160.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_2.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_3.n_146.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_3.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_4.n_143.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_4.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_5.n_125.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_5.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_6.n_110.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_6.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_7.n_87.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_7.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_8.n_51.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_8.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_9.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_11.n_91.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_11.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_13.n_61.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_13.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_14.n_61.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_14.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_16.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_18.n_43.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_18.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_246.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_20.n_39.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_20.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_21.n_35.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_21.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_22.n_32.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_22.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_24.n_30.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_24.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_201.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_165.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_119.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_112.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_108.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_105.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_104.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_0.n_2063.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_0.n_2063.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_10.n_366.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_10.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_11.n_237.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_11.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_12.n_226.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_12.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_13.n_96.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_13.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_14.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_14.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_15.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_16.n_51.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_16.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_1.n_1947.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_1.n_1947.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_2.n_1521.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_2.n_1521.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_3.n_1479.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_3.n_1479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_4.n_804.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_4.n_804.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_5.n_795.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_5.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_6.n_597.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_6.n_597.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_7.n_540.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_7.n_540.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_8.n_531.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_8.n_531.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_9.n_394.CWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_9.n_394.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_0.n_923.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_0.n_923.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_10.n_334.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_10.n_334.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_11.n_318.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_11.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_12.n_296.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_12.n_296.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_13.n_254.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_13.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_14.n_221.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_14.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_15.n_161.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_15.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_16.n_154.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_16.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_17.n_153.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_17.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_18.n_146.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_18.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_19.n_136.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_19.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_1.n_846.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_1.n_846.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_20.n_132.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_20.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_21.n_124.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_21.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_22.n_102.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_22.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_23.n_96.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_23.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_24.n_96.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_24.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_25.n_95.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_25.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_26.n_86.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_26.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_27.n_75.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_27.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_28.n_63.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_28.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_29.n_51.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_29.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_2.n_620.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_2.n_620.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_30.n_50.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_30.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_31.n_26.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_31.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_32.n_25.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_32.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_3.n_522.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_3.n_522.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_4.n_503.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_4.n_503.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_5.n_459.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_5.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_6.n_441.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_6.n_441.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_7.n_435.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_7.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_8.n_427.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_8.n_427.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_9.n_343.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_9.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_0.n_923.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_0.n_923.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_10.n_334.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_10.n_334.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_11.n_318.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_11.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_12.n_296.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_12.n_296.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_13.n_254.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_13.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_14.n_221.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_14.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_15.n_161.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_15.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_16.n_154.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_16.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_17.n_153.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_17.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_18.n_146.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_18.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_19.n_136.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_19.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_1.n_846.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_1.n_846.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_20.n_132.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_20.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_21.n_124.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_21.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_22.n_102.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_22.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_23.n_96.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_23.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_24.n_96.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_24.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_25.n_95.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_25.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_26.n_86.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_26.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_27.n_75.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_27.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_28.n_63.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_28.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_29.n_51.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_29.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_2.n_620.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_2.n_620.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_30.n_50.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_30.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_31.n_26.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_31.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_32.n_25.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_32.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_3.n_522.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_3.n_522.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_4.n_503.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_4.n_503.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_5.n_459.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_5.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_6.n_441.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_6.n_441.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_7.n_435.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_7.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_8.n_427.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_8.n_427.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_9.n_343.CWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_9.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_0.n_4941.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_0.n_4941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_10.n_103.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_10.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_11.n_82.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_11.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_12.n_60.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_12.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_13.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_14.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_15.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_16.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_1.n_4505.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_1.n_4505.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_2.n_3752.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_2.n_3752.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_3.n_1848.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_3.n_1848.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_4.n_1471.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_4.n_1471.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_5.n_1179.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_5.n_1179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_6.n_439.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_6.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_7.n_183.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_7.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_8.n_182.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_8.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_9.n_140.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_9.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_0.n_1667.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_0.n_1667.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_1.n_243.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_1.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_2.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_3.n_130.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_3.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_4.n_126.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_4.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_5.n_109.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_5.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_6.n_103.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_6.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_7.n_85.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_7.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_8.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_0.n_5497.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_0.n_5497.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_10.n_68.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_10.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_11.n_55.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_11.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_12.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_1.n_2518.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_1.n_2518.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_2.n_1214.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_2.n_1214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_3.n_385.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_3.n_385.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_4.n_242.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_4.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_5.n_146.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_5.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_6.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_7.n_123.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_7.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_8.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_9.n_69.CWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_9.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_0.n_947.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_0.n_947.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_10.n_43.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_10.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_11.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_12.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_1.n_563.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_1.n_563.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_2.n_430.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_2.n_430.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_3.n_250.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_3.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_4.n_123.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_4.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_5.n_101.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_5.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_6.n_82.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_6.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_7.n_78.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_7.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_8.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_0.n_1445.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_0.n_1445.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_10.n_67.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_10.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_11.n_48.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_11.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_12.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_13.n_28.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_13.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_1.n_992.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_1.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_2.n_844.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_2.n_844.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_3.n_831.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_3.n_831.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_4.n_514.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_4.n_514.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_5.n_295.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_5.n_295.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_6.n_289.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_6.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_7.n_149.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_7.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_8.n_117.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_8.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_9.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_0.n_18248.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_0.n_18248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_10.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_10.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_1.n_1239.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_1.n_1239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_2.n_671.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_2.n_671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_3.n_526.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_3.n_526.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_4.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_5.n_298.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_5.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_6.n_178.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_6.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_7.n_149.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_7.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_8.n_90.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_8.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_9.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_0.n_16057.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_0.n_16057.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_10.n_96.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_10.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_11.n_95.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_11.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_12.n_91.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_12.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_13.n_78.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_13.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_14.n_65.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_14.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_15.n_62.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_15.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_16.n_53.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_16.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_17.n_41.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_17.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_19.n_40.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_19.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_1.n_638.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_1.n_638.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_20.n_39.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_20.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_21.n_23.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_21.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_2.n_608.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_2.n_608.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_3.n_498.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_3.n_498.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_4.n_474.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_4.n_474.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_5.n_469.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_5.n_469.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_6.n_424.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_6.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_7.n_294.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_7.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_8.n_223.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_8.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_9.n_212.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_9.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_10.n_386.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_10.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_11.n_372.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_11.n_372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_12.n_345.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_12.n_345.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_13.n_341.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_13.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_14.n_327.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_14.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_15.n_322.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_15.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_16.n_318.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_16.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_17.n_318.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_17.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_18.n_312.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_18.n_312.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_19.n_301.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_19.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_1.n_1832.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_1.n_1832.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_20.n_294.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_20.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_21.n_292.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_21.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_22.n_282.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_22.n_282.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_23.n_272.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_23.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_24.n_254.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_24.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_25.n_254.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_25.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_26.n_240.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_26.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_27.n_236.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_27.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_28.n_232.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_28.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_29.n_226.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_29.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_2.n_930.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_2.n_930.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_30.n_206.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_30.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_31.n_197.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_31.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_32.n_193.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_32.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_33.n_193.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_33.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_34.n_191.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_34.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_35.n_175.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_35.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_36.n_171.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_36.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_37.n_168.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_37.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_38.n_163.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_38.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_39.n_157.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_39.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_3.n_883.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_3.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_40.n_156.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_40.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_41.n_149.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_41.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_42.n_136.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_42.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_43.n_135.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_43.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_44.n_109.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_44.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_45.n_98.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_45.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_4.n_830.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_4.n_830.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_5.n_521.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_5.n_521.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_6.n_435.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_6.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_7.n_435.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_7.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_8.n_435.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_8.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_9.n_390.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_9.n_390.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_0.n_120.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_0.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_10.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_11.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_1.n_116.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_1.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_2.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_3.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_4.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_5.n_47.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_5.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_6.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_7.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_8.n_40.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_8.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_9.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_1.n_1705.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_1.n_1705.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_2.n_511.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_2.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_3.n_230.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_3.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_4.n_107.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_4.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_5.n_82.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_5.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_6.n_56.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_6.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_7.n_47.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_7.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_8.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_0.n_358.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_0.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_10.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_11.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_1.n_108.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_1.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_2.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_3.n_100.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_3.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_4.n_91.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_4.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_5.n_90.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_5.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_6.n_71.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_6.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_7.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_8.n_43.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_8.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_9.n_37.CWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_9.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_0.n_3278.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_0.n_3278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_10.n_291.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_10.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_11.n_255.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_11.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_12.n_236.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_12.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_13.n_174.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_13.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_14.n_170.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_14.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_15.n_146.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_15.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_16.n_125.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_16.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_17.n_110.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_17.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_18.n_99.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_18.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_19.n_91.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_19.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_1.n_2292.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_1.n_2292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_20.n_57.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_20.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_21.n_47.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_21.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_22.n_40.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_22.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_23.n_37.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_23.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_24.n_32.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_24.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_25.n_26.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_25.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_2.n_1250.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_2.n_1250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_3.n_1213.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_3.n_1213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_4.n_882.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_4.n_882.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_5.n_758.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_5.n_758.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_6.n_551.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_6.n_551.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_7.n_472.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_7.n_472.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_8.n_369.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_8.n_369.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_9.n_322.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_9.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_0.n_3814.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_0.n_3814.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_10.n_340.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_10.n_340.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_11.n_303.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_11.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_12.n_280.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_12.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_13.n_273.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_13.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_14.n_263.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_14.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_15.n_215.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_15.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_16.n_205.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_16.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_17.n_167.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_17.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_18.n_129.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_18.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_19.n_104.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_19.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_1.n_1564.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_1.n_1564.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_20.n_100.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_20.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_21.n_72.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_21.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_22.n_29.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_22.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_23.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_24.n_28.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_24.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_25.n_22.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_25.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_2.n_1347.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_2.n_1347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_3.n_712.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_3.n_712.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_4.n_683.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_4.n_683.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_5.n_561.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_5.n_561.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_6.n_470.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_6.n_470.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_7.n_433.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_7.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_8.n_413.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_8.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_9.n_406.CWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_9.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_10.n_215.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_10.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_11.n_210.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_11.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_12.n_203.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_12.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_13.n_189.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_13.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_14.n_99.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_14.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_15.n_82.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_15.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_16.n_76.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_16.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_17.n_75.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_17.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_18.n_66.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_18.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_19.n_61.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_19.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_1.n_814.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_1.n_814.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_22.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_23.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_24.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_25.n_21.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_25.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_2.n_407.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_2.n_407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_3.n_379.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_3.n_379.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_4.n_350.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_4.n_350.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_5.n_309.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_5.n_309.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_6.n_286.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_6.n_286.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_7.n_248.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_7.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_8.n_231.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_8.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_9.n_228.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_9.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_10.n_215.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_10.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_11.n_210.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_11.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_12.n_203.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_12.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_13.n_189.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_13.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_14.n_99.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_14.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_15.n_82.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_15.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_16.n_76.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_16.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_17.n_75.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_17.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_18.n_66.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_18.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_19.n_61.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_19.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_1.n_814.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_1.n_814.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_22.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_23.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_24.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_25.n_21.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_25.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_2.n_407.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_2.n_407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_3.n_379.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_3.n_379.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_4.n_350.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_4.n_350.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_5.n_309.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_5.n_309.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_6.n_286.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_6.n_286.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_7.n_248.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_7.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_8.n_231.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_8.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_9.n_228.CWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_9.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.CWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_0.n_2952.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_0.n_2952.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_10.n_250.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_10.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_11.n_214.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_11.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_12.n_189.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_12.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_13.n_163.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_13.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_14.n_147.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_14.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_15.n_140.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_15.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_16.n_133.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_16.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_17.n_72.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_17.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_18.n_61.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_18.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_19.n_60.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_19.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_1.n_1539.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_1.n_1539.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_20.n_55.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_20.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_21.n_47.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_21.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_22.n_36.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_22.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_23.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_24.n_22.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_24.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_2.n_1524.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_2.n_1524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_3.n_982.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_3.n_982.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_4.n_686.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_4.n_686.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_5.n_433.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_5.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_6.n_427.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_6.n_427.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_7.n_418.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_7.n_418.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_8.n_364.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_8.n_364.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_9.n_320.CWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_9.n_320.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_11.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_13.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_14.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_16.n_48.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_16.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_17.n_48.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_17.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_18.n_44.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_18.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_19.n_43.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_19.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_20.n_43.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_20.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_21.n_42.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_21.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_22.n_42.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_22.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_23.n_41.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_23.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_24.n_41.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_24.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_25.n_40.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_25.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_26.n_36.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_26.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_27.n_34.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_27.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_28.n_34.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_28.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_29.n_34.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_29.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_2.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_30.n_33.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_30.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_31.n_31.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_31.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_32.n_29.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_32.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_33.n_29.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_33.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_34.n_28.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_34.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_35.n_27.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_35.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_36.n_27.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_36.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_37.n_26.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_37.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_38.n_26.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_38.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_39.n_25.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_39.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_3.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_40.n_24.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_40.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_41.n_22.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_41.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_42.n_21.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_42.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_43.n_20.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_43.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_4.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_5.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_0.n_391.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_0.n_391.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_10.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_11.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_12.n_38.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_12.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_13.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_14.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_1.n_116.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_1.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_2.n_106.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_2.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_3.n_101.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_3.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_4.n_72.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_4.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_5.n_71.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_5.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_6.n_71.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_6.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_7.n_68.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_7.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_8.n_47.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_8.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_9.n_44.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_9.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_0.n_1279.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_0.n_1279.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_11.n_104.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_11.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_12.n_104.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_12.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_13.n_86.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_13.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_14.n_79.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_14.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_15.n_43.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_15.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_16.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_17.n_33.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_17.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_1.n_1161.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_1.n_1161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_2.n_1145.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_2.n_1145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_3.n_556.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_3.n_556.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_4.n_401.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_4.n_401.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_5.n_392.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_5.n_392.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_6.n_312.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_6.n_312.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_7.n_218.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_7.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_8.n_213.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_8.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_9.n_187.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_9.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_0.n_6261.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_0.n_6261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_10.n_254.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_10.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_11.n_172.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_11.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_12.n_133.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_12.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_13.n_130.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_13.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_14.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_15.n_72.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_15.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_16.n_66.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_16.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_17.n_62.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_17.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_18.n_58.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_18.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_19.n_53.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_19.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_1.n_2226.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_1.n_2226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_20.n_44.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_20.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_21.n_37.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_21.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_22.n_29.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_22.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_23.n_24.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_23.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_24.n_22.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_24.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_25.n_21.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_25.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_2.n_1711.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_2.n_1711.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_3.n_1194.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_3.n_1194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_4.n_883.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_4.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_5.n_839.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_5.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_6.n_718.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_6.n_718.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_7.n_687.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_7.n_687.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_8.n_462.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_8.n_462.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_9.n_270.CWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_9.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_0.n_3660.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_0.n_3660.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_10.n_71.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_10.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_11.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_12.n_65.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_12.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_13.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_14.n_29.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_14.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_1.n_573.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_1.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_2.n_318.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_2.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_3.n_286.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_3.n_286.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_4.n_217.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_4.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_5.n_167.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_5.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_6.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_7.n_100.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_7.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_8.n_98.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_8.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_9.n_93.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_9.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_13.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_14.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_16.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_17.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_18.n_28.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_18.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_19.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_20.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_7.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_8.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_9.n_50.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_9.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_45.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_0.n_526.CWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_0.n_526.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_10.n_123.CWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_10.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_11.n_66.CWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_11.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_12.n_62.CWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_12.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_13.n_59.CWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_13.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_14.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_1.n_390.CWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_1.n_390.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_2.n_369.CWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_2.n_369.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_3.n_347.CWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_3.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_4.n_233.CWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_4.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_5.n_232.CWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_5.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_6.n_225.CWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_6.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_7.n_191.CWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_7.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_8.n_186.CWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_8.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_9.n_157.CWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_9.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_0.n_4485.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_0.n_4485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_10.n_323.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_10.n_323.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_11.n_258.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_11.n_258.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_12.n_247.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_12.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_13.n_191.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_13.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_14.n_158.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_14.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_15.n_138.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_15.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_16.n_88.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_16.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_17.n_70.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_17.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_18.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_19.n_36.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_19.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_1.n_3240.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_1.n_3240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_2.n_1947.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_2.n_1947.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_3.n_1946.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_3.n_1946.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_4.n_1288.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_4.n_1288.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_5.n_867.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_5.n_867.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_6.n_784.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_6.n_784.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_7.n_648.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_7.n_648.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_8.n_579.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_8.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_9.n_447.CWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_9.n_447.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_0.n_1012.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_0.n_1012.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_10.n_179.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_10.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_11.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_12.n_145.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_12.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_13.n_138.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_13.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_14.n_124.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_14.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_15.n_113.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_15.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_16.n_94.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_16.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_17.n_86.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_17.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_18.n_58.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_18.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_19.n_42.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_19.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_1.n_805.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_1.n_805.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_20.n_39.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_20.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_21.n_33.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_21.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_22.n_22.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_22.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_2.n_720.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_2.n_720.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_3.n_346.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_3.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_4.n_270.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_4.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_5.n_269.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_5.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_6.n_250.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_6.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_7.n_237.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_7.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_8.n_219.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_8.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_9.n_199.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_9.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_0.n_2530.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_0.n_2530.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_10.n_56.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_10.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_11.n_48.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_11.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_1.n_1728.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_1.n_1728.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_2.n_1235.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_2.n_1235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_3.n_415.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_3.n_415.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_4.n_307.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_4.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_5.n_231.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_5.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_6.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_7.n_163.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_7.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_8.n_78.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_8.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_9.n_70.CWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_9.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_0.n_7707.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_0.n_7707.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_10.n_86.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_10.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_11.n_78.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_11.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_12.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_13.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_14.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_1.n_1472.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_1.n_1472.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_2.n_1273.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_2.n_1273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_3.n_594.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_3.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_4.n_561.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_4.n_561.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_5.n_424.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_5.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_6.n_411.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_6.n_411.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_7.n_318.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_7.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_8.n_224.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_8.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_9.n_172.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_9.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_0.n_11531.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_0.n_11531.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_10.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_11.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_1.n_9604.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_1.n_9604.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_2.n_4086.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_2.n_4086.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_3.n_249.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_3.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_4.n_233.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_4.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_5.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_6.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_7.n_72.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_7.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_8.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000EUM.bestfold.profile.pattern_0.n_1796.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000EUM.bestfold.profile.pattern_0.n_1796.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_0.n_8731.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_0.n_8731.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_10.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_10.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_1.n_3779.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_1.n_3779.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_2.n_2400.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_2.n_2400.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_3.n_660.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_3.n_660.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_4.n_194.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_4.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_5.n_141.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_5.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_6.n_137.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_6.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_7.n_87.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_7.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_8.n_83.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_8.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_0.n_13583.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_0.n_13583.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_10.n_86.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_10.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_11.n_69.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_11.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_12.n_62.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_12.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_13.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_14.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_15.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_1.n_2622.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_1.n_2622.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_2.n_627.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_2.n_627.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_3.n_457.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_3.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_4.n_362.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_4.n_362.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_5.n_317.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_5.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_6.n_280.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_6.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_7.n_278.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_7.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_8.n_217.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_8.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_9.n_126.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_9.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_0.n_14948.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_0.n_14948.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_10.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_11.n_66.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_11.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_13.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_14.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_15.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_15.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_16.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_17.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_18.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_19.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_1.n_8174.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_1.n_8174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_2.n_4261.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_2.n_4261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_3.n_512.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_3.n_512.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_4.n_291.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_4.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_5.n_239.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_5.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_6.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_7.n_183.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_7.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_0.n_5609.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_0.n_5609.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_10.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_14.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_1.n_4708.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_1.n_4708.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_2.n_2781.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_2.n_2781.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_3.n_892.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_3.n_892.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_4.n_595.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_4.n_595.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_5.n_557.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_5.n_557.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_6.n_495.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_6.n_495.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_7.n_324.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_7.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_8.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_9.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_0.n_6283.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_0.n_6283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_10.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_1.n_412.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_1.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_2.n_386.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_2.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_3.n_281.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_3.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_4.n_106.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_4.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_5.n_76.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_5.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_6.n_68.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_6.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_7.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_8.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_9.n_44.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_9.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_0.n_8778.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_0.n_8778.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_10.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_10.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_1.n_3957.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_1.n_3957.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_2.n_3477.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_2.n_3477.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_3.n_549.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_3.n_549.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_4.n_487.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_4.n_487.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_5.n_235.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_5.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_6.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_7.n_143.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_7.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_8.n_112.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_8.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_9.n_55.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_9.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_0.n_9922.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_0.n_9922.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_10.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_11.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_1.n_2387.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_1.n_2387.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_2.n_1154.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_2.n_1154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_3.n_744.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_3.n_744.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_4.n_343.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_4.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_5.n_320.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_5.n_320.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_6.n_191.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_6.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_7.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_8.n_75.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_8.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_9.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_0.n_8283.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_0.n_8283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_10.n_146.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_10.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_11.n_105.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_11.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_12.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_12.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_13.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_14.n_50.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_14.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_1.n_2779.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_1.n_2779.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_2.n_958.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_2.n_958.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_3.n_574.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_3.n_574.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_4.n_479.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_4.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_5.n_404.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_5.n_404.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_6.n_275.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_6.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_7.n_201.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_7.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_8.n_196.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_8.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_9.n_179.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_9.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_0.n_18250.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_0.n_18250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_10.n_111.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_10.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_11.n_108.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_11.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_12.n_81.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_12.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_13.n_79.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_13.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_14.n_39.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_14.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_15.n_29.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_15.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_1.n_4600.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_1.n_4600.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_2.n_1812.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_2.n_1812.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_3.n_558.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_3.n_558.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_4.n_195.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_4.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_5.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_5.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_6.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_7.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_8.n_123.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_8.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_9.n_121.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_9.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_0.n_5267.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_0.n_5267.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_1.n_391.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_1.n_391.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_2.n_157.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_2.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_3.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_4.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_5.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_0.n_9647.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_0.n_9647.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_10.n_156.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_10.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_11.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_12.n_117.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_12.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_13.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_15.n_41.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_15.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_16.n_29.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_16.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_17.n_26.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_17.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_1.n_7692.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_1.n_7692.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_2.n_6885.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_2.n_6885.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_3.n_4455.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_3.n_4455.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_4.n_2057.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_4.n_2057.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_5.n_1151.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_5.n_1151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_6.n_1051.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_6.n_1051.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_7.n_672.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_7.n_672.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_8.n_355.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_8.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_9.n_181.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_9.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_0.n_10987.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_0.n_10987.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_10.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_1.n_2515.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_1.n_2515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_2.n_2144.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_2.n_2144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_3.n_929.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_3.n_929.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_4.n_677.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_4.n_677.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_5.n_332.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_5.n_332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_6.n_177.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_6.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_7.n_152.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_7.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_8.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_9.n_48.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_9.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_0.n_3895.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_0.n_3895.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_1.n_660.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_1.n_660.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_2.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_0.n_11278.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_0.n_11278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_10.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_1.n_3966.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_1.n_3966.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_2.n_1117.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_2.n_1117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_3.n_1086.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_3.n_1086.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_4.n_470.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_4.n_470.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_5.n_421.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_5.n_421.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_6.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_7.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_8.n_58.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_8.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_9.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_0.n_8724.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_0.n_8724.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_10.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_10.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_11.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_12.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_13.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_1.n_1957.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_1.n_1957.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_2.n_1220.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_2.n_1220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_3.n_494.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_3.n_494.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_4.n_349.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_4.n_349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_5.n_203.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_5.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_6.n_156.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_6.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_7.n_124.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_7.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_8.n_97.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_8.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_9.n_73.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_9.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_0.n_7707.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_0.n_7707.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_10.n_86.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_10.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_11.n_78.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_11.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_12.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_13.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_14.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_1.n_1472.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_1.n_1472.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_2.n_1273.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_2.n_1273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_3.n_594.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_3.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_4.n_561.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_4.n_561.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_5.n_424.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_5.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_6.n_411.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_6.n_411.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_7.n_318.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_7.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_8.n_224.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_8.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_9.n_172.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_9.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_0.n_11531.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_0.n_11531.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_10.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_11.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_1.n_9604.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_1.n_9604.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_2.n_4086.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_2.n_4086.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_3.n_249.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_3.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_4.n_233.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_4.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_5.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_6.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_7.n_72.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_7.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_8.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000EUM.bestfold.profile.pattern_0.n_1796.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000EUM.bestfold.profile.pattern_0.n_1796.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_0.n_8731.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_0.n_8731.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_10.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_10.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_1.n_3779.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_1.n_3779.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_2.n_2400.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_2.n_2400.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_3.n_660.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_3.n_660.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_4.n_194.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_4.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_5.n_141.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_5.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_6.n_137.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_6.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_7.n_87.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_7.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_8.n_83.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_8.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_0.n_13583.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_0.n_13583.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_10.n_86.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_10.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_11.n_69.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_11.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_12.n_62.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_12.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_13.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_14.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_15.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_1.n_2622.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_1.n_2622.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_2.n_627.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_2.n_627.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_3.n_457.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_3.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_4.n_362.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_4.n_362.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_5.n_317.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_5.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_6.n_280.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_6.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_7.n_278.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_7.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_8.n_217.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_8.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_9.n_126.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_9.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_0.n_14948.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_0.n_14948.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_10.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_11.n_66.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_11.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_13.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_14.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_15.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_15.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_16.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_17.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_18.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_19.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_1.n_8174.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_1.n_8174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_2.n_4261.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_2.n_4261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_3.n_512.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_3.n_512.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_4.n_291.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_4.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_5.n_239.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_5.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_6.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_7.n_183.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_7.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_0.n_5609.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_0.n_5609.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_10.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_14.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_1.n_4708.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_1.n_4708.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_2.n_2781.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_2.n_2781.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_3.n_892.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_3.n_892.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_4.n_595.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_4.n_595.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_5.n_557.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_5.n_557.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_6.n_495.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_6.n_495.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_7.n_324.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_7.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_8.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_9.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_0.n_6283.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_0.n_6283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_10.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_1.n_412.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_1.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_2.n_386.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_2.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_3.n_281.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_3.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_4.n_106.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_4.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_5.n_76.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_5.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_6.n_68.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_6.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_7.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_8.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_9.n_44.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_9.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_0.n_8778.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_0.n_8778.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_10.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_10.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_1.n_3957.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_1.n_3957.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_2.n_3477.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_2.n_3477.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_3.n_549.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_3.n_549.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_4.n_487.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_4.n_487.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_5.n_235.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_5.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_6.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_7.n_143.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_7.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_8.n_112.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_8.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_9.n_55.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_9.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_0.n_9922.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_0.n_9922.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_10.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_11.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_1.n_2387.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_1.n_2387.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_2.n_1154.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_2.n_1154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_3.n_744.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_3.n_744.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_4.n_343.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_4.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_5.n_320.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_5.n_320.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_6.n_191.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_6.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_7.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_8.n_75.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_8.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_9.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_0.n_8283.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_0.n_8283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_10.n_146.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_10.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_11.n_105.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_11.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_12.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_12.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_13.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_14.n_50.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_14.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_1.n_2779.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_1.n_2779.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_2.n_958.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_2.n_958.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_3.n_574.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_3.n_574.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_4.n_479.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_4.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_5.n_404.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_5.n_404.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_6.n_275.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_6.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_7.n_201.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_7.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_8.n_196.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_8.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_9.n_179.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_9.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_0.n_18250.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_0.n_18250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_10.n_111.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_10.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_11.n_108.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_11.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_12.n_81.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_12.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_13.n_79.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_13.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_14.n_39.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_14.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_15.n_29.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_15.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_1.n_4600.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_1.n_4600.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_2.n_1812.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_2.n_1812.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_3.n_558.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_3.n_558.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_4.n_195.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_4.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_5.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_5.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_6.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_7.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_8.n_123.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_8.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_9.n_121.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_9.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_0.n_5267.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_0.n_5267.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_1.n_391.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_1.n_391.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_2.n_157.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_2.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_3.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_4.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_5.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_0.n_9647.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_0.n_9647.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_10.n_156.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_10.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_11.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_12.n_117.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_12.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_13.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_15.n_41.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_15.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_16.n_29.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_16.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_17.n_26.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_17.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_1.n_7692.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_1.n_7692.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_2.n_6885.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_2.n_6885.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_3.n_4455.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_3.n_4455.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_4.n_2057.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_4.n_2057.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_5.n_1151.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_5.n_1151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_6.n_1051.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_6.n_1051.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_7.n_672.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_7.n_672.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_8.n_355.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_8.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_9.n_181.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_9.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_0.n_10987.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_0.n_10987.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_10.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_1.n_2515.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_1.n_2515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_2.n_2144.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_2.n_2144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_3.n_929.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_3.n_929.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_4.n_677.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_4.n_677.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_5.n_332.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_5.n_332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_6.n_177.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_6.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_7.n_152.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_7.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_8.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_9.n_48.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_9.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_0.n_3895.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_0.n_3895.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_1.n_660.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_1.n_660.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_2.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_0.n_11278.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_0.n_11278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_10.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_1.n_3966.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_1.n_3966.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_2.n_1117.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_2.n_1117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_3.n_1086.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_3.n_1086.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_4.n_470.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_4.n_470.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_5.n_421.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_5.n_421.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_6.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_7.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_8.n_58.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_8.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_9.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_0.n_8724.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_0.n_8724.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_10.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_10.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_11.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_12.n_56.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_12.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_13.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_1.n_1957.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_1.n_1957.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_2.n_1220.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_2.n_1220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_3.n_494.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_3.n_494.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_4.n_349.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_4.n_349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_5.n_203.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_5.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_6.n_156.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_6.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_7.n_124.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_7.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_8.n_97.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_8.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_9.n_73.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_9.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_0.n_8193.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_0.n_8193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_1.n_388.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_1.n_388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_3.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_0.n_1492.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_0.n_1492.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_10.n_133.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_10.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_11.n_128.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_11.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_12.n_127.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_12.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_13.n_112.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_13.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_14.n_99.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_14.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_15.n_84.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_15.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_16.n_73.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_16.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_17.n_59.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_17.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_18.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_1.n_952.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_1.n_952.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_2.n_586.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_2.n_586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_3.n_506.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_3.n_506.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_4.n_468.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_4.n_468.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_5.n_300.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_5.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_6.n_234.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_6.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_7.n_225.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_7.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_8.n_164.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_8.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_9.n_154.CWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_9.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_121.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_100.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_96.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_80.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_408.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_394.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_394.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_12.n_354.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_12.n_354.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_13.n_303.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_13.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_14.n_230.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_14.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_15.n_73.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_15.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_16.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_17.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_1210.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_1210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_703.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_703.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_694.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_694.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_591.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_591.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_586.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_578.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_578.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_509.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_509.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_502.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_502.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_449.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_449.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HEK418-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_28.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HEK418-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HEK418-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HEK418-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_0.n_759.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_0.n_759.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_10.n_113.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_10.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_11.n_79.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_11.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_12.n_74.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_12.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_13.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_14.n_59.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_14.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_15.n_51.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_15.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_16.n_40.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_16.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_17.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_1.n_272.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_1.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_2.n_192.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_2.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_3.n_183.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_3.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_4.n_173.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_4.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_5.n_172.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_5.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_6.n_156.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_6.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_7.n_139.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_7.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_8.n_135.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_8.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_9.n_134.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_9.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_0.n_1196.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_0.n_1196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_1.n_1055.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_1.n_1055.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_2.n_309.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_2.n_309.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_3.n_241.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_3.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_4.n_149.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_4.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_5.n_76.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_5.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_6.n_49.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_6.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_8.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_0.n_1039.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_0.n_1039.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_1.n_703.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_1.n_703.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_2.n_247.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_2.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_3.n_122.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_3.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_4.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_5.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_0.n_189.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_0.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_10.n_43.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_10.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_11.n_31.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_11.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_12.n_27.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_12.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_13.n_27.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_13.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_14.n_24.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_14.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_15.n_23.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_15.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_1.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_2.n_75.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_2.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_3.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_5.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_6.n_64.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_6.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_7.n_61.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_7.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_8.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_0.n_132.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_0.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_10.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_11.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_12.n_70.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_12.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_13.n_69.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_13.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_14.n_68.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_14.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_15.n_65.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_15.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_16.n_63.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_16.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_17.n_59.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_17.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_18.n_56.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_18.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_19.n_55.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_19.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_1.n_128.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_1.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_20.n_55.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_20.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_21.n_54.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_21.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_22.n_49.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_22.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_23.n_48.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_23.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_24.n_37.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_24.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_25.n_35.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_25.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_26.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_27.n_33.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_27.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_28.n_30.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_28.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_29.n_28.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_29.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_2.n_126.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_2.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_3.n_114.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_3.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_4.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_5.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_6.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_7.n_101.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_7.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_8.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_9.n_83.CWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_9.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_0.n_584.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_0.n_584.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_10.n_136.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_10.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_11.n_126.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_11.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_12.n_97.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_12.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_13.n_77.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_13.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_14.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_1.n_364.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_1.n_364.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_2.n_285.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_2.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_3.n_275.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_3.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_4.n_270.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_4.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_5.n_267.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_5.n_267.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_6.n_264.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_6.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_7.n_254.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_7.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_8.n_218.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_8.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_9.n_153.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_9.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_0.n_3165.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_0.n_3165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_10.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_11.n_82.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_11.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_12.n_62.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_12.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_13.n_43.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_13.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_1.n_1792.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_1.n_1792.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_2.n_1692.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_2.n_1692.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_3.n_1277.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_3.n_1277.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_4.n_368.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_4.n_368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_5.n_361.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_5.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_6.n_298.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_6.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_7.n_276.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_7.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_8.n_227.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_8.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_9.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_0.n_1663.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_0.n_1663.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_1.n_1328.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_1.n_1328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_2.n_1079.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_2.n_1079.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_3.n_734.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_3.n_734.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_4.n_626.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_4.n_626.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_5.n_306.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_5.n_306.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_6.n_165.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_6.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_7.n_161.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_7.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_8.n_126.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_8.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_9.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_0.n_1007.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_0.n_1007.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_10.n_97.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_10.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_11.n_89.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_11.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_12.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_13.n_78.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_13.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_14.n_74.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_14.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_15.n_69.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_15.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_16.n_65.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_16.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_17.n_62.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_17.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_18.n_54.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_18.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_19.n_29.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_19.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_1.n_372.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_1.n_372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_2.n_340.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_2.n_340.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_3.n_301.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_3.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_4.n_213.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_4.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_5.n_178.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_5.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_6.n_168.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_6.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_7.n_165.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_7.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_8.n_138.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_8.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_9.n_115.CWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_9.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_0.n_1850.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_0.n_1850.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_1.n_150.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_1.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_2.n_96.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_2.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_3.n_85.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_3.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_4.n_79.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_4.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_5.n_74.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_5.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_6.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_7.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_9.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_0.n_2228.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_0.n_2228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_10.n_209.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_10.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_11.n_208.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_11.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_12.n_192.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_12.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_13.n_162.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_13.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_14.n_55.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_14.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_15.n_26.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_15.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_16.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_1.n_1640.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_1.n_1640.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_2.n_1097.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_2.n_1097.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_3.n_840.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_3.n_840.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_4.n_806.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_4.n_806.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_5.n_650.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_5.n_650.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_6.n_501.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_6.n_501.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_7.n_330.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_7.n_330.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_8.n_273.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_8.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_9.n_220.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_9.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_0.n_735.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_0.n_735.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_10.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_1.n_665.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_1.n_665.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_2.n_581.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_2.n_581.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_3.n_184.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_3.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_4.n_142.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_4.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_5.n_137.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_5.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_6.n_127.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_6.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_7.n_86.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_7.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_8.n_76.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_8.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_9.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_0.n_1661.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_0.n_1661.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_10.n_142.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_10.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_11.n_133.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_11.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_12.n_74.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_12.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_13.n_60.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_13.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_14.n_50.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_14.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_15.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_16.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_17.n_24.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_17.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_1.n_956.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_1.n_956.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_2.n_440.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_2.n_440.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_3.n_348.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_3.n_348.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_4.n_323.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_4.n_323.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_5.n_234.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_5.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_6.n_227.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_6.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_7.n_190.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_7.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_8.n_185.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_8.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_9.n_155.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_9.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_0.n_142.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_0.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_1.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_2.n_91.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_2.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_3.n_87.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_3.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_4.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_6.n_49.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_6.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_7.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_8.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_0.n_2449.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_0.n_2449.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_10.n_50.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_10.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_11.n_28.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_11.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_12.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_13.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_1.n_2284.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_1.n_2284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_2.n_1676.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_2.n_1676.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_3.n_1266.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_3.n_1266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_4.n_771.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_4.n_771.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_5.n_206.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_5.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_6.n_205.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_6.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_7.n_166.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_7.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_8.n_117.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_8.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_9.n_71.CWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_9.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_0.n_926.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_0.n_926.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_10.n_91.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_10.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_11.n_84.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_11.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_12.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_13.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_14.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_16.n_40.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_16.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_17.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_1.n_405.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_1.n_405.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_2.n_224.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_2.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_3.n_185.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_3.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_4.n_178.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_4.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_5.n_153.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_5.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_6.n_135.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_6.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_7.n_127.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_7.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_8.n_111.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_8.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_9.n_92.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_9.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_0.n_926.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_0.n_926.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_10.n_91.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_10.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_11.n_84.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_11.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_12.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_13.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_14.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_16.n_40.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_16.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_17.n_23.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_17.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_1.n_405.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_1.n_405.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_2.n_224.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_2.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_3.n_185.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_3.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_4.n_178.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_4.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_5.n_153.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_5.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_6.n_135.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_6.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_7.n_127.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_7.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_8.n_111.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_8.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_9.n_92.CWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_9.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_24.n_185.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_24.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_25.n_182.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_25.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_26.n_177.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_26.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_27.n_173.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_27.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_28.n_168.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_28.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_29.n_160.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_29.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_24.n_369.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_24.n_369.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_25.n_342.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_25.n_342.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_26.n_341.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_26.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_27.n_331.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_27.n_331.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_28.n_328.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_28.n_328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_0.n_2033.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_0.n_2033.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_1.n_1643.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_1.n_1643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_2.n_692.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_2.n_692.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_3.n_604.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_3.n_604.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_4.n_499.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_4.n_499.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_5.n_231.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_5.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_6.n_180.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_6.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_7.n_141.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_7.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_8.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_9.n_31.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_9.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_0.n_2994.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_0.n_2994.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_10.n_146.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_10.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_11.n_106.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_11.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_12.n_98.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_12.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_13.n_90.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_13.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_14.n_81.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_14.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_15.n_80.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_15.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_16.n_70.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_16.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_17.n_66.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_17.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_18.n_40.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_18.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_19.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_1.n_468.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_1.n_468.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_20.n_24.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_20.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_21.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_2.n_228.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_2.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_3.n_224.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_3.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_4.n_213.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_4.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_5.n_188.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_5.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_6.n_187.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_6.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_7.n_170.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_7.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_8.n_155.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_8.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_9.n_154.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_9.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_0.n_624.CWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_0.n_624.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_1.n_375.CWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_1.n_375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_2.n_153.CWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_2.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_3.n_82.CWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_3.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_4.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_0.n_2235.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_0.n_2235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_10.n_237.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_10.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_11.n_91.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_11.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_12.n_73.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_12.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_13.n_59.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_13.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_14.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_1.n_1946.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_1.n_1946.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_2.n_1914.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_2.n_1914.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_3.n_1885.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_3.n_1885.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_4.n_1424.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_4.n_1424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_5.n_674.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_5.n_674.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_6.n_537.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_6.n_537.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_7.n_377.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_7.n_377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_8.n_372.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_8.n_372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_9.n_310.CWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_9.n_310.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_5.n_1185.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_5.n_1185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_6.n_1054.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_6.n_1054.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_7.n_830.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_7.n_830.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_8.n_824.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_8.n_824.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_9.n_758.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_9.n_758.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_223.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_0.n_1191.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_0.n_1191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_10.n_123.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_10.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_11.n_82.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_11.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_12.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_13.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_14.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_16.n_24.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_16.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_1.n_670.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_1.n_670.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_2.n_437.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_2.n_437.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_3.n_383.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_3.n_383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_4.n_375.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_4.n_375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_5.n_326.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_5.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_6.n_209.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_6.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_7.n_207.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_7.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_8.n_202.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_8.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_9.n_198.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_9.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.CWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_0.n_426.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_0.n_426.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_10.n_87.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_10.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_11.n_81.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_11.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_12.n_77.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_12.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_13.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_14.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_15.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_16.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_16.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_17.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_18.n_24.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_18.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_19.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_1.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_2.n_135.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_2.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_3.n_134.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_3.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_4.n_120.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_4.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_5.n_112.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_5.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_6.n_97.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_6.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_7.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_8.n_90.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_8.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_9.n_87.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_9.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_0.n_784.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_0.n_784.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_10.n_217.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_10.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_11.n_199.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_11.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_12.n_195.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_12.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_13.n_168.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_13.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_14.n_149.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_14.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_15.n_129.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_15.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_16.n_107.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_16.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_17.n_105.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_17.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_18.n_102.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_18.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_19.n_95.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_19.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_1.n_520.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_1.n_520.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_20.n_83.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_20.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_21.n_77.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_21.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_2.n_450.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_2.n_450.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_3.n_398.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_3.n_398.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_4.n_344.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_4.n_344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_5.n_337.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_5.n_337.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_6.n_326.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_6.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_7.n_308.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_7.n_308.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_8.n_282.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_8.n_282.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_9.n_226.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_9.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_0.n_426.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_0.n_426.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_10.n_87.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_10.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_11.n_81.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_11.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_12.n_77.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_12.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_13.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_14.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_15.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_16.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_16.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_17.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_18.n_24.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_18.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_19.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_1.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_2.n_135.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_2.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_3.n_134.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_3.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_4.n_120.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_4.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_5.n_112.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_5.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_6.n_97.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_6.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_7.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_8.n_90.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_8.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_9.n_87.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_9.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_0.n_784.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_0.n_784.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_10.n_217.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_10.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_11.n_199.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_11.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_12.n_195.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_12.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_13.n_168.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_13.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_14.n_149.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_14.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_15.n_129.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_15.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_16.n_107.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_16.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_17.n_105.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_17.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_18.n_102.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_18.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_19.n_95.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_19.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_1.n_520.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_1.n_520.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_20.n_83.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_20.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_21.n_77.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_21.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_2.n_450.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_2.n_450.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_3.n_398.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_3.n_398.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_4.n_344.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_4.n_344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_5.n_337.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_5.n_337.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_6.n_326.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_6.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_7.n_308.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_7.n_308.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_8.n_282.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_8.n_282.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_9.n_226.CWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_9.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF404-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_0.n_1776.CWM.meme motif-alignments-all-vs-all/ZNF404/ZNF404-201-vs-ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_0.n_1776.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF404-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all/ZNF404/ZNF404-201-vs-ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_1.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF404-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_2.n_49.CWM.meme motif-alignments-all-vs-all/ZNF404/ZNF404-201-vs-ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_2.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.CWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_0.n_353.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_0.n_353.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_10.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_1.n_182.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_1.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_2.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_3.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_4.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_5.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_9.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_0.n_2496.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_0.n_2496.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_10.n_106.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_10.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_11.n_84.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_11.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_12.n_65.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_12.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_13.n_57.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_13.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_14.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_15.n_43.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_15.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_16.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_17.n_34.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_17.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_18.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_19.n_27.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_19.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_1.n_858.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_1.n_858.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_20.n_22.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_20.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_2.n_754.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_2.n_754.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_3.n_696.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_3.n_696.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_4.n_555.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_4.n_555.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_5.n_436.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_5.n_436.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_6.n_290.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_6.n_290.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_7.n_273.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_7.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_8.n_250.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_8.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_9.n_178.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_9.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_34.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_288.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_288.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_243.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_226.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_175.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_114.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_103.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_97.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_0.n_3039.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_0.n_3039.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_10.n_46.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_10.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_11.n_21.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_11.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_1.n_1275.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_1.n_1275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_2.n_867.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_2.n_867.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_3.n_765.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_3.n_765.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_4.n_757.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_4.n_757.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_5.n_373.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_5.n_373.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_6.n_357.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_6.n_357.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_7.n_241.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_7.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_8.n_190.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_8.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_9.n_184.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_9.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_0.n_7289.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_0.n_7289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_10.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_1.n_2634.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_1.n_2634.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_2.n_2158.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_2.n_2158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_3.n_1455.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_3.n_1455.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_4.n_761.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_4.n_761.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_5.n_713.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_5.n_713.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_6.n_517.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_6.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_7.n_394.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_7.n_394.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_8.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_9.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_30.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_4.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_5.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_0.n_209.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_0.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_11.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_12.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_14.n_28.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_14.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_15.n_26.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_15.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_1.n_80.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_1.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_2.n_74.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_2.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_3.n_71.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_3.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_4.n_69.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_4.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_6.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_7.n_58.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_7.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_8.n_51.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_8.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_9.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_0.n_573.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_0.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_10.n_115.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_10.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_11.n_113.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_11.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_12.n_112.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_12.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_13.n_108.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_13.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_14.n_79.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_14.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_15.n_77.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_15.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_16.n_62.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_16.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_17.n_60.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_17.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_18.n_42.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_18.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_19.n_37.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_19.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_1.n_357.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_1.n_357.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_20.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_21.n_21.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_21.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_2.n_325.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_2.n_325.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_3.n_291.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_3.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_4.n_255.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_4.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_5.n_202.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_5.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_6.n_166.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_6.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_7.n_150.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_7.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_8.n_130.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_8.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_9.n_117.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_9.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_10.n_299.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_10.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_11.n_275.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_11.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_12.n_226.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_12.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_13.n_220.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_13.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_14.n_183.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_14.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_15.n_173.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_15.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_16.n_171.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_16.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_17.n_148.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_17.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_18.n_121.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_18.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_19.n_118.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_19.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_463.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_463.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_20.n_95.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_20.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_21.n_90.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_21.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_22.n_65.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_22.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_23.n_56.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_23.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_24.n_34.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_24.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_448.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_448.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_440.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_440.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_4.n_425.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_4.n_425.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_5.n_411.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_5.n_411.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_6.n_389.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_6.n_389.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_7.n_354.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_7.n_354.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_8.n_318.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_8.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_9.n_304.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_9.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HEK293-ENCSR348ONY.bestfold.profile.pattern_0.n_104.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HEK293-ENCSR348ONY.bestfold.profile.pattern_0.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HEK293-ENCSR348ONY.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HEK293-ENCSR348ONY.bestfold.profile.pattern_1.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HEK293-ENCSR348ONY.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HEK293-ENCSR348ONY.bestfold.profile.pattern_2.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HEK293-ENCSR348ONY.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HEK293-ENCSR348ONY.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_0.n_872.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_0.n_872.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_10.n_131.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_10.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_11.n_106.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_11.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_12.n_99.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_12.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_13.n_97.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_13.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_14.n_84.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_14.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_15.n_53.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_15.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_16.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_1.n_812.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_1.n_812.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_2.n_430.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_2.n_430.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_3.n_376.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_3.n_376.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_4.n_283.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_4.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_5.n_179.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_5.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_6.n_160.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_6.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_7.n_158.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_7.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_8.n_150.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_8.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_9.n_135.CWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_9.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_0.n_4110.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_0.n_4110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_1.n_3423.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_1.n_3423.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_2.n_179.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_2.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_3.n_158.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_3.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_5.n_91.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_5.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_6.n_89.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_6.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_7.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_8.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_1.n_347.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_1.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_2.n_160.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_2.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_3.n_125.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_3.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_4.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_6.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_0.n_4110.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_0.n_4110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_1.n_3423.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_1.n_3423.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_2.n_179.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_2.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_3.n_158.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_3.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_4.n_119.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_4.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_5.n_91.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_5.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_6.n_89.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_6.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_7.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_8.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_1.n_347.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_1.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_2.n_160.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_2.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_3.n_125.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_3.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_4.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_6.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_0.n_4806.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_0.n_4806.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_10.n_288.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_10.n_288.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_11.n_287.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_11.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_12.n_242.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_12.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_13.n_178.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_13.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_14.n_152.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_14.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_15.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_15.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_16.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_16.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_17.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_1.n_4037.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_1.n_4037.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_2.n_2352.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_2.n_2352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_3.n_1815.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_3.n_1815.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_4.n_1515.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_4.n_1515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_5.n_1363.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_5.n_1363.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_6.n_1099.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_6.n_1099.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_7.n_797.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_7.n_797.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_8.n_390.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_8.n_390.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_9.n_382.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_9.n_382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_0.n_864.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_0.n_864.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_10.n_88.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_10.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_11.n_79.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_11.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_12.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_13.n_72.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_13.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_14.n_62.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_14.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_15.n_60.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_15.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_16.n_55.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_16.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_17.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_17.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_18.n_37.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_18.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_19.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_19.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_1.n_188.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_1.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_20.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_20.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_21.n_29.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_21.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_22.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_22.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_23.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_23.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_24.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_25.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_25.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_2.n_170.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_2.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_3.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_3.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_4.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_4.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_5.n_132.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_5.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_6.n_118.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_6.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_7.n_109.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_7.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_8.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_8.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_9.n_91.CWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_9.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_0.n_124.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_0.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_10.n_49.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_10.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_11.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_12.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_13.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_14.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_15.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_1.n_110.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_1.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_2.n_105.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_2.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_3.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_4.n_75.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_4.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_5.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_6.n_69.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_6.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_7.n_68.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_7.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_8.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_9.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_0.n_5368.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_0.n_5368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_10.n_477.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_10.n_477.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_11.n_322.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_11.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_12.n_285.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_12.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_13.n_240.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_13.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_14.n_154.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_14.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_15.n_150.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_15.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_16.n_122.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_16.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_17.n_50.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_17.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_18.n_46.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_18.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_19.n_40.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_19.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_1.n_3281.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_1.n_3281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_20.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_21.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_23.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_24.n_20.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_24.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_2.n_2246.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_2.n_2246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_3.n_1784.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_3.n_1784.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_4.n_1338.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_4.n_1338.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_5.n_973.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_5.n_973.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_6.n_568.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_6.n_568.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_7.n_557.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_7.n_557.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_8.n_504.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_8.n_504.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_9.n_480.CWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_9.n_480.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_0.n_1256.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_0.n_1256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_10.n_63.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_10.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_11.n_63.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_11.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_12.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_13.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_14.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_16.n_27.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_16.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_17.n_26.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_17.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_1.n_1066.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_1.n_1066.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_2.n_491.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_2.n_491.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_3.n_357.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_3.n_357.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_4.n_303.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_4.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_5.n_127.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_5.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_6.n_98.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_6.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_7.n_85.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_7.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_9.n_63.CWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_9.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_0.n_1554.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_0.n_1554.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_10.n_116.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_10.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_11.n_80.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_11.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_12.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_13.n_26.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_13.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_14.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_15.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_1.n_1258.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_1.n_1258.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_2.n_1073.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_2.n_1073.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_3.n_503.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_3.n_503.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_4.n_334.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_4.n_334.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_5.n_234.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_5.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_6.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_7.n_151.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_7.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_8.n_150.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_8.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_9.n_146.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_9.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_0.n_546.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_0.n_546.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_10.n_34.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_10.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_11.n_30.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_11.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_1.n_461.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_1.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_2.n_343.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_2.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_3.n_158.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_3.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_4.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_5.n_71.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_5.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_6.n_64.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_6.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_7.n_63.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_7.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_8.n_46.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_8.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_9.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_0.n_1616.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_0.n_1616.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_10.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_11.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_12.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_1.n_872.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_1.n_872.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_2.n_744.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_2.n_744.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_3.n_534.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_3.n_534.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_4.n_531.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_4.n_531.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_5.n_265.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_5.n_265.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_6.n_253.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_6.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_7.n_147.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_7.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_8.n_95.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_8.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_9.n_82.CWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_9.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_0.n_1153.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_0.n_1153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_10.n_56.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_10.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_11.n_45.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_11.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_12.n_27.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_12.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_1.n_427.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_1.n_427.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_2.n_230.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_2.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_3.n_221.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_3.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_4.n_141.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_4.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_5.n_116.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_5.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_6.n_109.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_6.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_7.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_9.n_66.CWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_9.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_0.n_3536.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_0.n_3536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_10.n_36.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_10.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_1.n_3338.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_1.n_3338.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_2.n_284.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_2.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_3.n_238.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_3.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_4.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_5.n_77.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_5.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_6.n_71.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_6.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_7.n_67.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_7.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_8.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_9.n_56.CWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_9.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_0.n_63.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_0.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_10.n_37.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_10.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_11.n_37.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_11.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_13.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_14.n_30.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_14.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_15.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_16.n_29.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_16.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_17.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_18.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_19.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_1.n_59.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_1.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_20.n_24.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_20.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_21.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_2.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_3.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_4.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_5.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_6.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_7.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_8.n_44.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_8.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_9.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_0.n_4705.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_0.n_4705.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_1.n_2047.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_1.n_2047.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_2.n_480.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_2.n_480.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_3.n_392.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_3.n_392.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_4.n_146.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_4.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_5.n_123.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_5.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_6.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_0.n_407.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_0.n_407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_11.n_40.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_11.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_12.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_13.n_27.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_13.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_14.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_1.n_185.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_1.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_2.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_3.n_97.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_3.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_4.n_94.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_4.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_5.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_6.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_7.n_55.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_7.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_8.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_9.n_41.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_9.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_0.n_18074.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_0.n_18074.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_1.n_799.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_1.n_799.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_2.n_621.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_2.n_621.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_3.n_445.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_3.n_445.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_4.n_189.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_4.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_5.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_6.n_64.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_6.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_7.n_55.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_7.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_8.n_44.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_8.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_0.n_11721.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_0.n_11721.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_10.n_264.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_10.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_11.n_258.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_11.n_258.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_12.n_181.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_12.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_13.n_170.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_13.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_14.n_164.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_14.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_15.n_114.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_15.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_16.n_108.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_16.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_17.n_108.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_17.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_18.n_102.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_18.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_19.n_74.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_19.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_1.n_2979.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_1.n_2979.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_20.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_21.n_36.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_21.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_22.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_24.n_28.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_24.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_25.n_28.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_25.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_26.n_27.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_26.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_2.n_2098.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_2.n_2098.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_3.n_1926.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_3.n_1926.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_4.n_1014.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_4.n_1014.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_5.n_851.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_5.n_851.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_6.n_592.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_6.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_7.n_502.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_7.n_502.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_8.n_419.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_8.n_419.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_9.n_349.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_9.n_349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_0.n_15803.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_0.n_15803.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_10.n_213.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_10.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_11.n_198.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_11.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_12.n_177.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_12.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_13.n_171.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_13.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_14.n_166.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_14.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_15.n_165.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_15.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_16.n_165.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_16.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_17.n_158.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_17.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_18.n_149.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_18.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_19.n_137.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_19.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_1.n_2911.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_1.n_2911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_20.n_135.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_20.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_21.n_129.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_21.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_22.n_125.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_22.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_23.n_113.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_23.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_24.n_106.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_24.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_25.n_105.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_25.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_26.n_100.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_26.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_27.n_99.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_27.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_28.n_88.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_28.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_29.n_86.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_29.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_2.n_754.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_2.n_754.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_30.n_76.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_30.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_31.n_64.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_31.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_32.n_55.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_32.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_33.n_54.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_33.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_34.n_48.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_34.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_35.n_36.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_35.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_36.n_29.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_36.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_37.n_27.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_37.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_38.n_22.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_38.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_3.n_707.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_3.n_707.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_4.n_694.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_4.n_694.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_5.n_535.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_5.n_535.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_6.n_410.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_6.n_410.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_7.n_353.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_7.n_353.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_8.n_262.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_8.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_9.n_214.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_9.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_0.n_3584.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_0.n_3584.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_10.n_71.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_10.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_11.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_12.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_13.n_39.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_13.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_14.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_1.n_1935.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_1.n_1935.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_2.n_1445.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_2.n_1445.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_3.n_316.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_3.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_4.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_5.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_6.n_236.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_6.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_7.n_230.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_7.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_8.n_180.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_8.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_9.n_71.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_9.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_0.n_6129.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_0.n_6129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_10.n_61.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_10.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_11.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_12.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_1.n_1213.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_1.n_1213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_2.n_771.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_2.n_771.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_3.n_597.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_3.n_597.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_4.n_518.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_4.n_518.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_5.n_408.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_5.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_6.n_319.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_6.n_319.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_7.n_266.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_7.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_8.n_174.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_8.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_9.n_63.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_9.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_0.n_15253.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_0.n_15253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_10.n_255.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_10.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_11.n_205.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_11.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_12.n_192.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_12.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_13.n_169.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_13.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_14.n_153.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_14.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_15.n_146.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_15.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_16.n_127.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_16.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_17.n_81.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_17.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_18.n_56.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_18.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_19.n_44.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_19.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_1.n_1359.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_1.n_1359.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_20.n_42.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_20.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_21.n_33.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_21.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_22.n_29.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_22.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_23.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_24.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_2.n_1042.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_2.n_1042.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_3.n_988.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_3.n_988.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_4.n_784.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_4.n_784.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_5.n_512.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_5.n_512.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_6.n_474.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_6.n_474.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_7.n_450.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_7.n_450.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_8.n_386.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_8.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_9.n_327.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_9.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_0.n_4079.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_0.n_4079.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_1.n_413.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_1.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_2.n_306.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_2.n_306.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_3.n_211.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_3.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_4.n_211.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_4.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_5.n_171.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_5.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_6.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_7.n_26.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_7.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_9.n_22.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_9.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_0.n_2803.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_0.n_2803.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_10.n_44.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_10.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_11.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_1.n_2043.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_1.n_2043.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_2.n_490.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_2.n_490.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_3.n_271.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_3.n_271.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_4.n_200.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_4.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_5.n_176.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_5.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_6.n_88.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_6.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_7.n_61.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_7.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_8.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_9.n_59.CWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_9.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_0.n_1777.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_0.n_1777.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_10.n_263.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_10.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_11.n_243.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_11.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_12.n_218.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_12.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_13.n_166.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_13.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_14.n_100.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_14.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_15.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_16.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_1.n_834.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_1.n_834.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_2.n_606.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_2.n_606.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_3.n_387.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_3.n_387.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_4.n_382.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_4.n_382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_5.n_324.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_5.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_6.n_323.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_6.n_323.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_7.n_316.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_7.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_8.n_288.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_8.n_288.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_9.n_282.CWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_9.n_282.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_0.n_16840.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_0.n_16840.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_1.n_139.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_1.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_2.n_118.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_2.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_12.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_13.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_14.n_88.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_14.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_15.n_87.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_15.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_16.n_86.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_16.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_45.n_44.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_45.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_48.n_37.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_48.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_49.n_35.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_49.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_0.n_15464.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_0.n_15464.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_10.n_116.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_10.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_11.n_107.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_11.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_12.n_103.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_12.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_13.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_14.n_89.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_14.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_15.n_77.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_15.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_16.n_76.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_16.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_17.n_69.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_17.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_18.n_45.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_18.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_1.n_449.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_1.n_449.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_2.n_283.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_2.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_3.n_209.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_3.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_4.n_201.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_4.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_5.n_179.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_5.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_6.n_178.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_6.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_7.n_149.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_7.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_8.n_133.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_8.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_9.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_0.n_13401.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_0.n_13401.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_10.n_144.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_10.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_11.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_12.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_13.n_90.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_13.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_14.n_84.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_14.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_15.n_82.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_15.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_16.n_82.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_16.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_17.n_80.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_17.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_18.n_62.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_18.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_19.n_31.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_19.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_1.n_746.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_1.n_746.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_20.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_2.n_728.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_2.n_728.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_3.n_676.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_3.n_676.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_4.n_486.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_4.n_486.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_5.n_243.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_5.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_6.n_230.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_6.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_7.n_206.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_7.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_8.n_176.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_8.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_9.n_155.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_9.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_0.n_713.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_0.n_713.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_10.n_40.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_10.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_1.n_127.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_1.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_2.n_104.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_2.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_3.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_4.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_5.n_83.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_5.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_6.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_7.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_8.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_9.n_40.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_9.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_0.n_11288.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_0.n_11288.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_10.n_72.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_10.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_11.n_45.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_11.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_12.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_13.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_1.n_2299.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_1.n_2299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_2.n_1254.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_2.n_1254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_3.n_325.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_3.n_325.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_4.n_268.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_4.n_268.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_5.n_263.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_5.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_6.n_194.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_6.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_7.n_154.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_7.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_8.n_104.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_8.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_9.n_90.CWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_9.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_0.n_1796.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_0.n_1796.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_10.n_120.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_10.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_11.n_104.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_11.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_12.n_78.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_12.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_13.n_64.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_13.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_14.n_57.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_14.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_15.n_33.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_15.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_16.n_32.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_16.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_1.n_1591.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_1.n_1591.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_2.n_1298.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_2.n_1298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_3.n_946.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_3.n_946.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_4.n_857.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_4.n_857.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_5.n_311.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_5.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_6.n_255.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_6.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_7.n_228.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_7.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_8.n_200.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_8.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_9.n_127.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_9.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_0.n_1224.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_0.n_1224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_10.n_112.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_10.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_11.n_104.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_11.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_12.n_103.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_12.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_13.n_98.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_13.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_14.n_84.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_14.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_15.n_82.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_15.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_16.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_17.n_48.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_17.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_18.n_22.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_18.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_1.n_332.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_1.n_332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_2.n_284.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_2.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_3.n_263.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_3.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_4.n_262.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_4.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_5.n_229.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_5.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_6.n_164.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_6.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_7.n_159.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_7.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_8.n_136.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_8.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_9.n_126.CWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_9.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_0.n_2422.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_0.n_2422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_1.n_456.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_1.n_456.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_2.n_352.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_2.n_352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_3.n_248.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_3.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_4.n_86.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_4.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_5.n_84.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_5.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_6.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_7.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_8.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_117.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_10.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_11.n_28.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_11.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_12.n_27.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_12.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_13.n_26.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_13.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_14.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_2.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_3.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_4.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_5.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_6.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_7.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_8.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_9.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_0.n_4229.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_0.n_4229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_10.n_216.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_10.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_11.n_207.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_11.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_12.n_198.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_12.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_13.n_192.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_13.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_14.n_91.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_14.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_15.n_90.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_15.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_16.n_76.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_16.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_17.n_74.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_17.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_18.n_69.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_18.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_19.n_64.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_19.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_1.n_2950.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_1.n_2950.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_20.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_22.n_36.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_22.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_23.n_34.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_23.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_24.n_33.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_24.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_25.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_2.n_1025.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_2.n_1025.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_3.n_452.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_3.n_452.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_4.n_392.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_4.n_392.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_5.n_366.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_5.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_6.n_355.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_6.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_7.n_354.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_7.n_354.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_8.n_341.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_8.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_9.n_273.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_9.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_0.n_2888.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_0.n_2888.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_10.n_141.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_10.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_11.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_1.n_1066.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_1.n_1066.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_2.n_1052.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_2.n_1052.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_3.n_489.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_3.n_489.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_4.n_299.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_4.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_6.n_234.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_6.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_7.n_168.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_7.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_8.n_164.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_8.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_9.n_145.CWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_9.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_0.n_1248.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_0.n_1248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_10.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_11.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_12.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_13.n_26.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_13.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_1.n_1210.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_1.n_1210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_2.n_867.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_2.n_867.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_3.n_867.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_3.n_867.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_4.n_331.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_4.n_331.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_5.n_317.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_5.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_6.n_317.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_6.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_7.n_212.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_7.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_8.n_195.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_8.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_9.n_182.CWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_9.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_0.n_991.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_0.n_991.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_10.n_200.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_10.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_11.n_182.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_11.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_12.n_166.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_12.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_13.n_148.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_13.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_14.n_143.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_14.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_15.n_114.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_15.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_16.n_107.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_16.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_17.n_104.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_17.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_18.n_81.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_18.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_19.n_59.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_19.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_1.n_900.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_1.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_2.n_458.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_2.n_458.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_3.n_452.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_3.n_452.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_4.n_304.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_4.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_5.n_249.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_5.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_6.n_217.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_6.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_7.n_214.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_7.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_8.n_209.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_8.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_9.n_207.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_9.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_0.n_885.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_0.n_885.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_10.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_11.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_1.n_162.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_1.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_2.n_125.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_2.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_3.n_124.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_3.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_4.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_5.n_93.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_5.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_6.n_81.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_6.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_7.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_8.n_76.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_8.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_9.n_40.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_9.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_0.n_230.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_0.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_1.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_2.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_3.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_4.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_5.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_7.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_10.n_92.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_10.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_12.n_49.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_12.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_13.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_14.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_1.n_1711.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_1.n_1711.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_2.n_1486.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_2.n_1486.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_3.n_985.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_3.n_985.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_4.n_587.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_4.n_587.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_5.n_488.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_5.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_6.n_428.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_6.n_428.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_7.n_409.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_7.n_409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_8.n_287.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_8.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_9.n_255.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_9.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_10.n_92.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_10.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_12.n_49.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_12.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_13.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_14.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_1.n_1711.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_1.n_1711.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_2.n_1486.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_2.n_1486.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_3.n_985.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_3.n_985.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_4.n_587.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_4.n_587.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_5.n_488.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_5.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_6.n_428.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_6.n_428.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_7.n_409.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_7.n_409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_8.n_287.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_8.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_9.n_255.CWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_9.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_0.n_9044.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_0.n_9044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_10.n_245.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_10.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_11.n_207.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_11.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_12.n_160.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_12.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_13.n_122.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_13.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_14.n_90.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_14.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_15.n_52.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_15.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_16.n_47.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_16.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_17.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_1.n_4850.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_1.n_4850.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_2.n_4239.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_2.n_4239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_3.n_2634.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_3.n_2634.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_4.n_1384.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_4.n_1384.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_5.n_1221.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_5.n_1221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_6.n_851.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_6.n_851.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_7.n_792.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_7.n_792.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_8.n_530.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_8.n_530.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_9.n_464.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_9.n_464.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_0.n_405.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_0.n_405.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_10.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_11.n_27.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_11.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_12.n_24.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_12.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_1.n_213.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_1.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_2.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_3.n_63.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_3.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_4.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_5.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_6.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_7.n_33.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_7.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_8.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_9.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_0.n_4637.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_0.n_4637.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_10.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_11.n_53.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_11.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_12.n_49.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_12.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_13.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_14.n_31.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_14.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_1.n_2825.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_1.n_2825.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_2.n_2492.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_2.n_2492.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_3.n_877.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_3.n_877.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_4.n_795.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_4.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_5.n_638.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_5.n_638.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_6.n_577.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_6.n_577.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_7.n_455.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_7.n_455.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_8.n_310.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_8.n_310.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_9.n_101.CWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_9.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_0.n_9743.CWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_0.n_9743.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_1.n_9196.CWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_1.n_9196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_2.n_3052.CWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_2.n_3052.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_3.n_198.CWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_3.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_4.n_140.CWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_4.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_5.n_132.CWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_5.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_6.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_7.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_0.n_2250.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_0.n_2250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_10.n_90.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_10.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_11.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_12.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_13.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_13.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_14.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_15.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_1.n_2155.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_1.n_2155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_2.n_1589.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_2.n_1589.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_3.n_1332.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_3.n_1332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_4.n_766.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_4.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_5.n_724.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_5.n_724.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_6.n_337.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_6.n_337.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_7.n_281.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_7.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_8.n_165.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_8.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_9.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_0.n_2215.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_0.n_2215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_10.n_492.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_10.n_492.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_11.n_479.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_11.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_12.n_442.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_12.n_442.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_13.n_377.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_13.n_377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_14.n_377.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_14.n_377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_15.n_223.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_15.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_16.n_146.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_16.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_17.n_120.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_17.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_18.n_93.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_18.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_19.n_91.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_19.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_1.n_1216.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_1.n_1216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_20.n_80.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_20.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_21.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_21.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_22.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_22.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_2.n_1055.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_2.n_1055.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_3.n_811.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_3.n_811.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_4.n_692.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_4.n_692.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_5.n_592.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_5.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_6.n_569.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_6.n_569.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_7.n_525.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_7.n_525.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_8.n_515.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_8.n_515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_9.n_493.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_9.n_493.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_0.n_2250.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_0.n_2250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_10.n_90.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_10.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_11.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_12.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_13.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_13.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_14.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_15.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_1.n_2155.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_1.n_2155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_2.n_1589.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_2.n_1589.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_3.n_1332.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_3.n_1332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_4.n_766.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_4.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_5.n_724.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_5.n_724.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_6.n_337.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_6.n_337.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_7.n_281.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_7.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_8.n_165.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_8.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_9.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_0.n_2215.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_0.n_2215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_10.n_492.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_10.n_492.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_11.n_479.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_11.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_12.n_442.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_12.n_442.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_13.n_377.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_13.n_377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_14.n_377.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_14.n_377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_15.n_223.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_15.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_16.n_146.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_16.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_17.n_120.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_17.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_18.n_93.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_18.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_19.n_91.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_19.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_1.n_1216.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_1.n_1216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_20.n_80.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_20.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_21.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_21.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_22.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_22.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_2.n_1055.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_2.n_1055.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_3.n_811.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_3.n_811.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_4.n_692.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_4.n_692.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_5.n_592.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_5.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_6.n_569.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_6.n_569.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_7.n_525.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_7.n_525.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_8.n_515.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_8.n_515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_9.n_493.CWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_9.n_493.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_0.n_2270.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_0.n_2270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_1.n_246.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_1.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_2.n_165.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_2.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_3.n_156.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_3.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_4.n_98.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_4.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_5.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_0.n_2270.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_0.n_2270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_1.n_246.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_1.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_2.n_165.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_2.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_3.n_156.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_3.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_4.n_98.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_4.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_5.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_0.n_1618.CWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_0.n_1618.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_10.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_1.n_1399.CWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_1.n_1399.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_2.n_371.CWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_2.n_371.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_3.n_323.CWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_3.n_323.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_4.n_276.CWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_4.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_5.n_215.CWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_5.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_6.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_7.n_107.CWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_7.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_8.n_82.CWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_8.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_9.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_0.n_933.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_0.n_933.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_1.n_196.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_1.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_2.n_182.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_2.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_3.n_137.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_3.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_4.n_124.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_4.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_5.n_63.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_5.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_6.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_0.n_1284.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_0.n_1284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_10.n_92.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_10.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_11.n_89.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_11.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_12.n_57.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_12.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_13.n_46.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_13.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_1.n_1136.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_1.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_2.n_1135.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_2.n_1135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_3.n_1112.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_3.n_1112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_4.n_528.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_4.n_528.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_5.n_412.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_5.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_6.n_374.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_6.n_374.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_7.n_288.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_7.n_288.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_8.n_249.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_8.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_0.n_188.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_0.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_10.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_1.n_104.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_1.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_2.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_3.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_4.n_53.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_4.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_5.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_6.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_8.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_0.n_420.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_0.n_420.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_10.n_102.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_10.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_11.n_96.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_11.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_12.n_76.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_12.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_13.n_71.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_13.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_14.n_57.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_14.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_1.n_277.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_1.n_277.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_2.n_276.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_2.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_3.n_256.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_3.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_4.n_194.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_4.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_5.n_182.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_5.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_6.n_174.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_6.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_7.n_127.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_7.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_8.n_125.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_8.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_9.n_121.CWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_9.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_0.n_883.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_0.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_10.n_39.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_10.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_1.n_679.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_1.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_2.n_323.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_2.n_323.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_3.n_86.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_3.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_4.n_75.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_4.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_6.n_60.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_6.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_7.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_8.n_44.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_8.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_9.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_0.n_10989.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_0.n_10989.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_10.n_172.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_10.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_11.n_131.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_11.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_12.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_13.n_107.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_13.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_14.n_101.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_14.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_15.n_99.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_15.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_16.n_86.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_16.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_17.n_86.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_17.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_18.n_46.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_18.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_19.n_39.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_19.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_1.n_2669.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_1.n_2669.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_20.n_35.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_20.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_21.n_33.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_21.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_22.n_27.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_22.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_23.n_24.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_23.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_24.n_24.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_24.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_2.n_2542.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_2.n_2542.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_3.n_1121.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_3.n_1121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_4.n_861.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_4.n_861.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_5.n_413.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_5.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_6.n_386.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_6.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_7.n_369.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_7.n_369.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_8.n_244.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_8.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_9.n_185.CWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_9.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_0.n_609.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_0.n_609.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_10.n_70.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_10.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_11.n_66.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_11.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_12.n_58.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_12.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_13.n_57.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_13.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_14.n_57.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_14.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_15.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_16.n_39.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_16.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_17.n_34.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_17.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_18.n_26.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_18.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_1.n_216.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_1.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_2.n_150.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_2.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_3.n_147.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_3.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_4.n_147.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_4.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_5.n_112.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_5.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_6.n_108.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_6.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_7.n_91.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_7.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_8.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_9.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.CWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_10.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_11.n_37.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_11.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_12.n_33.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_12.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_0.n_2040.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_0.n_2040.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_10.n_340.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_10.n_340.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_11.n_265.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_11.n_265.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_12.n_247.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_12.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_13.n_227.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_13.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_14.n_191.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_14.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_15.n_179.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_15.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_16.n_171.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_16.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_17.n_124.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_17.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_18.n_83.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_18.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_19.n_81.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_19.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_1.n_1908.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_1.n_1908.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_20.n_24.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_20.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_21.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_22.n_20.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_22.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_2.n_1656.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_2.n_1656.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_3.n_1504.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_3.n_1504.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_4.n_1443.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_4.n_1443.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_5.n_749.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_5.n_749.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_6.n_608.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_6.n_608.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_7.n_521.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_7.n_521.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_8.n_519.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_8.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_9.n_398.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_9.n_398.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_0.n_12655.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_0.n_12655.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_1.n_372.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_1.n_372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_2.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_0.n_1181.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_0.n_1181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_10.n_83.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_10.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_11.n_81.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_11.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_13.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_14.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_15.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_1.n_1115.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_1.n_1115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_2.n_431.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_2.n_431.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_3.n_309.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_3.n_309.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_4.n_228.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_4.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_5.n_194.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_5.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_6.n_183.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_6.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_7.n_157.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_7.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_8.n_144.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_8.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_9.n_124.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_9.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_0.n_1849.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_0.n_1849.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_1.n_313.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_1.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_2.n_212.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_2.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_3.n_172.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_3.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_5.n_137.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_5.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_0.n_4274.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_0.n_4274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_1.n_1004.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_1.n_1004.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_2.n_729.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_2.n_729.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_3.n_600.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_3.n_600.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_4.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_6.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_0.n_6402.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_0.n_6402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_10.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_11.n_31.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_11.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_1.n_2128.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_1.n_2128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_2.n_1825.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_2.n_1825.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_3.n_1210.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_3.n_1210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_4.n_1099.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_4.n_1099.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_5.n_140.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_5.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_6.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_7.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_8.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_9.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_0.n_1057.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_0.n_1057.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_1.n_584.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_1.n_584.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_2.n_451.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_2.n_451.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_3.n_353.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_3.n_353.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_4.n_186.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_4.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_5.n_116.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_5.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_6.n_82.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_6.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_8.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_0.n_383.CWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_0.n_383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_1.n_273.CWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_1.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_2.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_3.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_5.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_6.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_7.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_0.n_2543.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_0.n_2543.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_1.n_301.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_1.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_2.n_275.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_2.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_3.n_238.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_3.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_4.n_229.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_4.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_5.n_213.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_5.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_6.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_7.n_72.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_7.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_8.n_54.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_8.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_9.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_0.n_2543.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_0.n_2543.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_1.n_301.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_1.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_2.n_275.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_2.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_3.n_238.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_3.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_4.n_229.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_4.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_5.n_213.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_5.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_6.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_7.n_72.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_7.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_8.n_54.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_8.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_9.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_10.n_99.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_10.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_11.n_97.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_11.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_12.n_86.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_12.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_13.n_84.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_13.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_14.n_78.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_14.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_15.n_67.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_15.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_16.n_63.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_16.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_17.n_60.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_17.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_18.n_52.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_18.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_19.n_45.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_19.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_1.n_327.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_1.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_20.n_44.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_20.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_21.n_34.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_21.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_22.n_31.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_22.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_24.n_29.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_24.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_2.n_292.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_2.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_3.n_227.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_3.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_4.n_174.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_4.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_5.n_124.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_5.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_6.n_123.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_6.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_7.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_8.n_101.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_8.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_9.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_10.n_99.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_10.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_11.n_97.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_11.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_12.n_86.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_12.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_13.n_84.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_13.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_14.n_78.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_14.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_15.n_67.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_15.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_16.n_63.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_16.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_17.n_60.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_17.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_18.n_52.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_18.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_19.n_45.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_19.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_1.n_327.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_1.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_20.n_44.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_20.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_21.n_34.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_21.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_22.n_31.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_22.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_24.n_29.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_24.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_2.n_292.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_2.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_3.n_227.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_3.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_4.n_174.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_4.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_5.n_124.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_5.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_6.n_123.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_6.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_7.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_8.n_101.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_8.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_9.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_0.n_3884.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_0.n_3884.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_10.n_141.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_10.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_11.n_124.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_11.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_12.n_92.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_12.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_13.n_90.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_13.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_14.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_15.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_1.n_532.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_1.n_532.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_2.n_315.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_2.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_3.n_265.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_3.n_265.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_4.n_233.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_4.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_5.n_227.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_5.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_6.n_212.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_6.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_7.n_179.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_7.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_8.n_167.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_8.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_9.n_158.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_9.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_0.n_3068.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_0.n_3068.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_10.n_243.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_10.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_11.n_237.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_11.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_12.n_154.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_12.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_13.n_60.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_13.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_1.n_1796.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_1.n_1796.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_2.n_1485.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_2.n_1485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_3.n_1169.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_3.n_1169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_4.n_1149.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_4.n_1149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_5.n_904.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_5.n_904.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_6.n_756.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_6.n_756.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_7.n_405.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_7.n_405.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_8.n_336.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_8.n_336.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_9.n_295.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_9.n_295.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_0.n_3282.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_0.n_3282.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_10.n_102.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_10.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_11.n_93.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_11.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_12.n_80.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_12.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_13.n_79.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_13.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_14.n_69.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_14.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_15.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_16.n_58.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_16.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_17.n_56.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_17.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_18.n_54.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_18.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_19.n_50.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_19.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_1.n_2357.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_1.n_2357.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_20.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_21.n_31.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_21.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_22.n_29.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_22.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_23.n_24.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_23.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_2.n_798.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_2.n_798.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_3.n_384.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_3.n_384.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_4.n_212.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_4.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_5.n_141.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_5.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_6.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_7.n_116.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_7.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_8.n_105.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_8.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_9.n_104.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_9.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_0.n_629.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_0.n_629.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_10.n_55.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_10.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_11.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_12.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_13.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_1.n_311.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_1.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_2.n_306.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_2.n_306.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_3.n_261.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_3.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_4.n_139.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_4.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_5.n_122.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_5.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_6.n_111.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_6.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_7.n_108.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_7.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_8.n_102.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_8.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_9.n_92.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_9.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_0.n_1004.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_0.n_1004.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_1.n_538.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_1.n_538.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_2.n_191.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_2.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_3.n_182.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_3.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_4.n_168.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_4.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_5.n_154.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_5.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_6.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_7.n_130.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_7.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_8.n_87.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_8.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_9.n_54.CWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_9.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_0.n_376.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_0.n_376.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_10.n_67.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_10.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_11.n_66.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_11.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_12.n_65.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_12.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_13.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_14.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_15.n_34.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_15.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_16.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_1.n_154.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_1.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_2.n_141.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_2.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_3.n_141.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_3.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_4.n_124.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_4.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_5.n_112.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_5.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_6.n_95.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_6.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_7.n_95.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_7.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_8.n_73.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_8.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_9.n_67.CWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_9.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HEK526-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HEK526-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_0.n_1908.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_0.n_1908.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_10.n_256.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_10.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_11.n_247.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_11.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_12.n_240.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_12.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_13.n_188.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_13.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_14.n_177.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_14.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_15.n_149.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_15.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_16.n_137.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_16.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_17.n_130.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_17.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_18.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_19.n_45.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_19.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_1.n_975.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_1.n_975.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_20.n_34.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_20.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_21.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_2.n_634.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_2.n_634.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_3.n_446.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_3.n_446.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_4.n_428.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_4.n_428.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_5.n_368.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_5.n_368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_6.n_359.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_6.n_359.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_7.n_353.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_7.n_353.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_8.n_338.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_8.n_338.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_9.n_309.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_9.n_309.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_0.n_2170.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_0.n_2170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_10.n_190.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_10.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_11.n_104.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_11.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_12.n_73.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_12.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_13.n_69.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_13.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_14.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_15.n_64.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_15.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_16.n_59.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_16.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_17.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_18.n_36.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_18.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_19.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_1.n_2101.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_1.n_2101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_20.n_34.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_20.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_21.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_22.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_2.n_1219.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_2.n_1219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_3.n_773.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_3.n_773.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_4.n_769.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_4.n_769.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_5.n_625.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_5.n_625.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_6.n_412.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_6.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_7.n_384.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_7.n_384.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_8.n_371.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_8.n_371.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_9.n_330.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_9.n_330.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_0.n_2170.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_0.n_2170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_10.n_190.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_10.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_11.n_104.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_11.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_12.n_73.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_12.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_13.n_69.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_13.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_14.n_67.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_14.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_15.n_64.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_15.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_16.n_59.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_16.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_17.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_18.n_36.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_18.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_19.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_1.n_2101.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_1.n_2101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_20.n_34.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_20.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_21.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_22.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_2.n_1219.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_2.n_1219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_3.n_773.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_3.n_773.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_4.n_769.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_4.n_769.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_5.n_625.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_5.n_625.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_6.n_412.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_6.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_7.n_384.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_7.n_384.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_8.n_371.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_8.n_371.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_9.n_330.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_9.n_330.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_0.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_10.n_56.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_10.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_11.n_52.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_11.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_12.n_52.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_12.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_13.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_14.n_40.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_14.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_16.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_1.n_163.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_1.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_2.n_117.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_2.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_3.n_112.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_3.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_4.n_104.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_4.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_5.n_98.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_5.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_6.n_97.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_6.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_7.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_8.n_79.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_8.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_9.n_59.CWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_9.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_0.n_2508.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_0.n_2508.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_10.n_117.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_10.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_11.n_116.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_11.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_12.n_101.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_12.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_13.n_76.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_13.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_14.n_35.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_14.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_15.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_1.n_2112.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_1.n_2112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_2.n_1511.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_2.n_1511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_3.n_1429.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_3.n_1429.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_4.n_571.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_4.n_571.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_5.n_507.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_5.n_507.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_6.n_366.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_6.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_7.n_247.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_7.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_8.n_162.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_8.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_9.n_155.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_9.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_0.n_224.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_0.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_10.n_67.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_10.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_11.n_65.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_11.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_12.n_62.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_12.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_13.n_56.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_13.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_15.n_36.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_15.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_16.n_31.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_16.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_17.n_31.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_17.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_18.n_28.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_18.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_19.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_1.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_20.n_25.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_20.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_21.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_22.n_20.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_22.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_2.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_3.n_100.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_3.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_4.n_95.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_4.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_5.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_6.n_75.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_6.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_7.n_74.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_7.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_8.n_72.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_8.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_9.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_0.n_2825.CWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_0.n_2825.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_1.n_334.CWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_1.n_334.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_2.n_106.CWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_2.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_3.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_0.n_2616.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_0.n_2616.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_10.n_60.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_10.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_11.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_12.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_1.n_224.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_1.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_2.n_189.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_2.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_3.n_169.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_3.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_4.n_167.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_4.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_5.n_125.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_5.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_6.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_7.n_94.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_7.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_8.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_9.n_70.CWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_9.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_0.n_590.CWM.meme motif-alignments-all-vs-all/ZNF214/ZNF214-201-vs-ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_0.n_590.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_1.n_271.CWM.meme motif-alignments-all-vs-all/ZNF214/ZNF214-201-vs-ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_1.n_271.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_2.n_258.CWM.meme motif-alignments-all-vs-all/ZNF214/ZNF214-201-vs-ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_2.n_258.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_0.n_4115.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_0.n_4115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_10.n_174.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_10.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_11.n_171.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_11.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_12.n_167.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_12.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_13.n_156.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_13.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_14.n_152.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_14.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_15.n_92.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_15.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_16.n_81.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_16.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_17.n_77.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_17.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_18.n_69.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_18.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_19.n_67.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_19.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_1.n_2167.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_1.n_2167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_20.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_21.n_49.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_21.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_22.n_42.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_22.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_23.n_42.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_23.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_24.n_37.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_24.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_25.n_33.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_25.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_26.n_31.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_26.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_27.n_31.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_27.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_28.n_28.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_28.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_29.n_27.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_29.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_2.n_2125.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_2.n_2125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_3.n_1648.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_3.n_1648.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_4.n_1388.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_4.n_1388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_5.n_1022.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_5.n_1022.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_6.n_1011.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_6.n_1011.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_7.n_563.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_7.n_563.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_8.n_351.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_8.n_351.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_9.n_265.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_9.n_265.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_0.n_8301.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_0.n_8301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_10.n_408.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_10.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_11.n_388.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_11.n_388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_12.n_382.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_12.n_382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_13.n_299.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_13.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_14.n_282.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_14.n_282.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_15.n_212.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_15.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_16.n_196.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_16.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_17.n_158.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_17.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_18.n_134.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_18.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_19.n_115.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_19.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_1.n_3255.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_1.n_3255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_20.n_97.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_20.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_21.n_38.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_21.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_22.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_23.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_24.n_24.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_24.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_2.n_2573.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_2.n_2573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_3.n_1857.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_3.n_1857.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_4.n_1747.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_4.n_1747.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_5.n_1643.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_5.n_1643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_6.n_1040.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_6.n_1040.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_7.n_978.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_7.n_978.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_8.n_716.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_8.n_716.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_9.n_686.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_9.n_686.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_0.n_118.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_0.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_10.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_1.n_36.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_1.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_3.n_29.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_3.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_5.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_7.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_8.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_0.n_3894.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_0.n_3894.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_10.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_11.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_12.n_38.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_12.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_13.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_14.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_15.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_1.n_1947.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_1.n_1947.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_2.n_1897.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_2.n_1897.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_3.n_1449.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_3.n_1449.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_4.n_1072.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_4.n_1072.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_5.n_1034.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_5.n_1034.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_6.n_838.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_6.n_838.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_7.n_611.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_7.n_611.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_8.n_394.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_8.n_394.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_9.n_273.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_9.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_0.n_5455.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_0.n_5455.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_10.n_499.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_10.n_499.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_11.n_474.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_11.n_474.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_12.n_386.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_12.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_13.n_372.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_13.n_372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_14.n_367.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_14.n_367.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_15.n_339.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_15.n_339.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_16.n_328.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_16.n_328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_17.n_252.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_17.n_252.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_18.n_249.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_18.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_19.n_235.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_19.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_1.n_4007.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_1.n_4007.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_20.n_171.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_20.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_21.n_116.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_21.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_22.n_45.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_22.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_23.n_43.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_23.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_2.n_1979.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_2.n_1979.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_3.n_1801.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_3.n_1801.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_4.n_1755.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_4.n_1755.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_5.n_1592.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_5.n_1592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_6.n_1078.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_6.n_1078.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_7.n_836.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_7.n_836.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_8.n_775.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_8.n_775.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_9.n_718.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_9.n_718.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_0.n_1278.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_0.n_1278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_1.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_3.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_4.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_0.n_7781.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_0.n_7781.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_10.n_173.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_10.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_11.n_140.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_11.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_12.n_132.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_12.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_13.n_102.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_13.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_14.n_81.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_14.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_15.n_71.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_15.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_16.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_17.n_34.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_17.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_1.n_3489.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_1.n_3489.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_2.n_3119.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_2.n_3119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_3.n_2940.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_3.n_2940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_4.n_2442.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_4.n_2442.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_5.n_1828.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_5.n_1828.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_6.n_931.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_6.n_931.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_7.n_596.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_7.n_596.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_8.n_296.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_8.n_296.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_9.n_274.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_9.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_0.n_7781.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_0.n_7781.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_10.n_173.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_10.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_11.n_140.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_11.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_12.n_132.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_12.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_13.n_102.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_13.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_14.n_81.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_14.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_15.n_71.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_15.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_16.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_17.n_34.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_17.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_1.n_3489.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_1.n_3489.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_2.n_3119.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_2.n_3119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_3.n_2940.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_3.n_2940.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_4.n_2442.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_4.n_2442.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_5.n_1828.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_5.n_1828.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_6.n_931.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_6.n_931.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_7.n_596.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_7.n_596.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_8.n_296.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_8.n_296.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_9.n_274.CWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_9.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_0.n_1021.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_0.n_1021.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_1.n_121.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_1.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_2.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_3.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_4.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_5.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_6.n_56.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_6.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_7.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_8.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_0.n_515.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_0.n_515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_1.n_333.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_1.n_333.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_2.n_272.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_2.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_3.n_194.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_3.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_4.n_180.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_4.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_5.n_156.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_5.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_6.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_7.n_80.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_7.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_8.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_0.n_98.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_0.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_10.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_11.n_67.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_11.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_12.n_65.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_12.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_13.n_59.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_13.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_14.n_57.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_14.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_15.n_56.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_15.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_16.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_17.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_18.n_53.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_18.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_19.n_52.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_19.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_1.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_20.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_21.n_45.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_21.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_22.n_43.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_22.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_23.n_38.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_23.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_24.n_37.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_24.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_25.n_36.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_25.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_26.n_33.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_26.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_27.n_33.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_27.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_28.n_30.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_28.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_29.n_24.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_29.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_2.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_30.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_3.n_85.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_3.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_4.n_82.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_4.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_5.n_81.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_5.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_7.n_80.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_7.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_8.n_75.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_8.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_9.n_74.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_9.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_0.n_23647.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_0.n_23647.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_10.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_11.n_61.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_11.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_12.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_1.n_2245.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_1.n_2245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_2.n_1583.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_2.n_1583.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_3.n_1379.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_3.n_1379.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_4.n_882.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_4.n_882.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_5.n_508.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_5.n_508.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_6.n_426.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_6.n_426.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_7.n_387.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_7.n_387.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_8.n_371.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_8.n_371.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_9.n_197.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_9.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_10.n_477.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_10.n_477.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_11.n_449.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_11.n_449.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_12.n_446.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_12.n_446.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_13.n_430.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_13.n_430.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_14.n_402.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_14.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_15.n_396.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_15.n_396.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_16.n_388.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_16.n_388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_17.n_287.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_17.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_18.n_258.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_18.n_258.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_19.n_239.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_19.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_1.n_2129.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_1.n_2129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_20.n_237.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_20.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_21.n_233.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_21.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_22.n_225.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_22.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_23.n_202.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_23.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_24.n_127.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_24.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_25.n_109.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_25.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_26.n_108.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_26.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_27.n_80.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_27.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_28.n_59.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_28.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_2.n_1284.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_2.n_1284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_3.n_1123.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_3.n_1123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_4.n_1018.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_4.n_1018.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_5.n_1009.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_5.n_1009.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_6.n_775.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_6.n_775.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_7.n_602.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_7.n_602.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_8.n_553.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_8.n_553.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_9.n_521.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_9.n_521.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_0.n_6922.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_0.n_6922.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_10.n_724.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_10.n_724.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_11.n_638.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_11.n_638.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_12.n_585.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_12.n_585.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_13.n_537.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_13.n_537.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_14.n_502.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_14.n_502.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_15.n_488.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_15.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_16.n_380.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_16.n_380.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_17.n_368.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_17.n_368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_18.n_303.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_18.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_19.n_296.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_19.n_296.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_1.n_4388.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_1.n_4388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_20.n_231.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_20.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_21.n_228.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_21.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_22.n_158.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_22.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_23.n_152.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_23.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_24.n_122.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_24.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_25.n_50.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_25.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_26.n_37.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_26.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_27.n_35.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_27.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_28.n_31.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_28.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_29.n_24.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_29.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_2.n_4018.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_2.n_4018.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_30.n_21.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_30.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_3.n_3142.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_3.n_3142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_4.n_2864.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_4.n_2864.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_5.n_2623.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_5.n_2623.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_6.n_2125.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_6.n_2125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_7.n_2024.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_7.n_2024.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_8.n_1203.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_8.n_1203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_9.n_1084.CWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_9.n_1084.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_0.n_1777.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_0.n_1777.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_10.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_1.n_1514.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_1.n_1514.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_2.n_1498.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_2.n_1498.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_3.n_636.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_3.n_636.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_4.n_293.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_4.n_293.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_5.n_284.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_5.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_6.n_257.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_6.n_257.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_7.n_254.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_7.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_8.n_73.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_8.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_9.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_9.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585B-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_0.n_5269.CWM.meme motif-alignments-all-vs-all/ZNF585B/ZNF585B-205-vs-ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_0.n_5269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585B-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_1.n_1141.CWM.meme motif-alignments-all-vs-all/ZNF585B/ZNF585B-205-vs-ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_1.n_1141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585B-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all/ZNF585B/ZNF585B-205-vs-ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_2.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_0.n_229.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_0.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_1.n_189.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_1.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_2.n_177.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_2.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_3.n_164.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_3.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_4.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_5.n_68.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_5.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_6.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_7.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_0.n_620.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_0.n_620.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_10.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_11.n_84.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_11.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_12.n_83.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_12.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_13.n_75.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_13.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_14.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_16.n_31.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_16.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_17.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_18.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_1.n_303.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_1.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_2.n_136.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_2.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_3.n_121.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_3.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_4.n_115.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_4.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_5.n_112.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_5.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_6.n_111.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_6.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_8.n_105.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_8.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_9.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_0.n_4281.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_0.n_4281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_1.n_2044.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_1.n_2044.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_2.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_3.n_643.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_3.n_643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_4.n_133.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_4.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_5.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_6.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_7.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_8.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_0.n_2425.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_0.n_2425.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_10.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_10.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_11.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_11.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_12.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_12.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_13.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_14.n_33.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_14.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_15.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_16.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_16.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_1.n_1374.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_1.n_1374.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_2.n_1271.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_2.n_1271.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_3.n_846.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_3.n_846.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_4.n_429.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_4.n_429.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_5.n_178.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_5.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_6.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_7.n_126.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_7.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_8.n_122.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_8.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_9.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_0.n_7514.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_0.n_7514.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_10.n_189.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_10.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_11.n_178.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_11.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_12.n_169.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_12.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_13.n_158.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_13.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_14.n_158.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_14.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_15.n_139.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_15.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_16.n_67.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_16.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_17.n_62.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_17.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_18.n_32.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_18.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_19.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_1.n_3375.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_1.n_3375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_2.n_2165.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_2.n_2165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_3.n_1425.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_3.n_1425.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_4.n_1240.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_4.n_1240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_5.n_922.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_5.n_922.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_6.n_507.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_6.n_507.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_7.n_376.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_7.n_376.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_8.n_238.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_8.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_9.n_219.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_9.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_0.n_9396.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_0.n_9396.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_10.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_11.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_12.n_60.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_12.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_13.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_14.n_53.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_14.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_15.n_51.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_15.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_16.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_17.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_18.n_41.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_18.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_1.n_7071.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_1.n_7071.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_20.n_30.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_20.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_21.n_29.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_21.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_22.n_29.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_22.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_23.n_27.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_23.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_24.n_22.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_24.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_25.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_2.n_2454.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_2.n_2454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_3.n_1390.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_3.n_1390.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_4.n_1142.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_4.n_1142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_5.n_397.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_5.n_397.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_6.n_388.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_6.n_388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_7.n_200.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_7.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_8.n_128.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_8.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_9.n_96.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_9.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_1.n_698.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_1.n_698.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_2.n_399.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_2.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_3.n_389.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_3.n_389.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_4.n_378.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_4.n_378.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_5.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_6.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_7.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_9.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.CWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_0.n_3667.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_0.n_3667.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_10.n_378.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_10.n_378.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_11.n_362.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_11.n_362.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_12.n_332.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_12.n_332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_13.n_312.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_13.n_312.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_14.n_255.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_14.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_15.n_242.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_15.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_16.n_210.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_16.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_17.n_183.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_17.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_18.n_139.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_18.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_19.n_102.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_19.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_1.n_3546.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_1.n_3546.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_20.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_21.n_40.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_21.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_22.n_25.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_22.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_23.n_20.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_23.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_2.n_3426.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_2.n_3426.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_3.n_1769.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_3.n_1769.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_4.n_1289.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_4.n_1289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_5.n_824.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_5.n_824.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_6.n_803.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_6.n_803.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_7.n_734.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_7.n_734.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_8.n_622.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_8.n_622.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_9.n_497.CWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_9.n_497.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_0.n_1615.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_0.n_1615.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_10.n_86.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_10.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_11.n_66.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_11.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_12.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_1.n_1129.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_1.n_1129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_2.n_455.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_2.n_455.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_3.n_349.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_3.n_349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_4.n_329.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_4.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_5.n_312.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_5.n_312.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_6.n_284.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_6.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_7.n_269.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_7.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_8.n_264.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_8.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_9.n_161.CWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_9.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_0.n_220.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_0.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_1.n_137.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_1.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_2.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_3.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_4.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_5.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_0.n_4084.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_0.n_4084.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_10.n_169.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_10.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_11.n_151.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_11.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_12.n_137.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_12.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_13.n_113.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_13.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_14.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_15.n_43.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_15.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_16.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_17.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_1.n_1470.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_1.n_1470.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_2.n_1101.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_2.n_1101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_3.n_666.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_3.n_666.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_4.n_480.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_4.n_480.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_5.n_380.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_5.n_380.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_6.n_356.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_6.n_356.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_7.n_338.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_7.n_338.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_8.n_328.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_8.n_328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_9.n_179.CWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_9.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_0.n_1618.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_0.n_1618.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_10.n_198.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_10.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_11.n_190.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_11.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_12.n_132.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_12.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_13.n_114.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_13.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_14.n_102.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_14.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_15.n_91.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_15.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_16.n_66.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_16.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_17.n_33.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_17.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_18.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_1.n_1370.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_1.n_1370.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_2.n_1016.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_2.n_1016.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_3.n_727.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_3.n_727.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_4.n_399.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_4.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_5.n_399.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_5.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_6.n_297.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_6.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_7.n_247.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_7.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_8.n_242.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_8.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_9.n_201.CWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_9.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_0.n_8412.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_0.n_8412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_10.n_235.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_10.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_11.n_104.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_11.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_12.n_77.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_12.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_1.n_5833.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_1.n_5833.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_2.n_4596.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_2.n_4596.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_3.n_2223.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_3.n_2223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_4.n_784.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_4.n_784.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_5.n_757.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_5.n_757.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_6.n_546.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_6.n_546.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_7.n_466.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_7.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_8.n_351.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_8.n_351.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_9.n_315.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_9.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_0.n_15291.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_0.n_15291.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_10.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_11.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_12.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_1.n_2944.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_1.n_2944.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_2.n_1738.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_2.n_1738.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_3.n_703.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_3.n_703.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_4.n_505.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_4.n_505.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_5.n_341.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_5.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_6.n_305.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_6.n_305.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_7.n_161.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_7.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_8.n_156.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_8.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_9.n_114.CWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_9.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_0.n_2890.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_0.n_2890.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_10.n_160.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_10.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_11.n_28.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_11.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_1.n_1233.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_1.n_1233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_2.n_254.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_2.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_3.n_253.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_3.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_4.n_238.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_4.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_5.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_6.n_196.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_6.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_7.n_182.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_7.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_8.n_174.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_8.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_9.n_171.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_9.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_0.n_3154.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_0.n_3154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_1.n_1083.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_1.n_1083.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_2.n_936.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_2.n_936.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_3.n_249.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_3.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_4.n_183.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_4.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_5.n_141.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_5.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_6.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_7.n_124.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_7.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_8.n_90.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_8.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_9.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_0.n_2115.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_0.n_2115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_10.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_11.n_59.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_11.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_12.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_13.n_57.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_13.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_14.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_1.n_334.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_1.n_334.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_2.n_244.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_2.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_3.n_234.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_3.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_4.n_195.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_4.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_5.n_184.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_5.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_6.n_130.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_6.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_7.n_129.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_7.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_8.n_92.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_8.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_9.n_82.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_9.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_0.n_3156.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_0.n_3156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_1.n_208.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_1.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_2.n_149.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_2.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_3.n_141.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_3.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_4.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_5.n_91.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_5.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_6.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_0.n_972.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_0.n_972.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_10.n_84.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_10.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_11.n_62.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_11.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_12.n_57.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_12.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_13.n_50.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_13.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_14.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_15.n_36.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_15.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_16.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_1.n_554.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_1.n_554.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_2.n_346.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_2.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_3.n_322.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_3.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_4.n_236.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_4.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_5.n_168.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_5.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_6.n_148.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_6.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_7.n_143.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_7.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_8.n_124.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_8.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_9.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_0.n_310.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_0.n_310.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_1.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_2.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_3.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_4.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_5.n_33.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_5.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_6.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_7.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_0.n_319.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_0.n_319.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_10.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_11.n_31.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_11.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_12.n_28.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_12.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_13.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_14.n_24.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_14.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_16.n_22.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_16.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_17.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_18.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_1.n_184.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_1.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_2.n_143.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_2.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_3.n_105.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_3.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_4.n_80.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_4.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_6.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_7.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_8.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_9.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_0.n_276.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_0.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_1.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_2.n_81.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_2.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_3.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_4.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_7.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_0.n_1270.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_0.n_1270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_10.n_244.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_10.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_11.n_237.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_11.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_12.n_171.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_12.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_13.n_163.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_13.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_14.n_140.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_14.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_15.n_121.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_15.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_16.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_17.n_111.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_17.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_18.n_102.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_18.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_19.n_96.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_19.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_1.n_550.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_1.n_550.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_20.n_95.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_20.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_21.n_85.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_21.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_22.n_68.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_22.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_23.n_58.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_23.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_24.n_54.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_24.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_25.n_48.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_25.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_26.n_31.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_26.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_2.n_545.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_2.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_3.n_436.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_3.n_436.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_4.n_414.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_4.n_414.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_5.n_399.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_5.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_6.n_378.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_6.n_378.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_7.n_319.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_7.n_319.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_8.n_282.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_8.n_282.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_9.n_280.CWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_9.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_0.n_6133.CWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_0.n_6133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_1.n_5926.CWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_1.n_5926.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_2.n_246.CWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_2.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_3.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_4.n_94.CWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_4.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_5.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_6.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_0.n_133.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_0.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_1.n_126.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_1.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_2.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_3.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_4.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_5.n_50.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_5.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_6.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_7.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_8.n_40.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_8.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_9.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_0.n_6522.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_0.n_6522.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_1.n_4915.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_1.n_4915.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_2.n_2085.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_2.n_2085.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_3.n_1244.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_3.n_1244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_4.n_272.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_4.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_5.n_172.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_5.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_6.n_171.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_6.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_7.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_8.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_0.n_953.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_0.n_953.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_10.n_71.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_10.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_11.n_67.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_11.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_12.n_65.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_12.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_13.n_63.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_13.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_14.n_58.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_14.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_15.n_53.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_15.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_16.n_51.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_16.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_17.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_18.n_24.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_18.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_19.n_20.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_19.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_1.n_392.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_1.n_392.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_2.n_158.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_2.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_3.n_121.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_3.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_4.n_117.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_4.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_5.n_105.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_5.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_6.n_96.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_6.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_7.n_87.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_7.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_8.n_86.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_8.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_9.n_71.CWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_9.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_1.n_169.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_1.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_2.n_101.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_2.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_3.n_85.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_3.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_1.n_169.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_1.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_2.n_101.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_2.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_3.n_85.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_3.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_0.n_1595.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_0.n_1595.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_10.n_164.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_10.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_11.n_162.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_11.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_12.n_143.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_12.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_13.n_127.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_13.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_14.n_97.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_14.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_15.n_87.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_15.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_16.n_85.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_16.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_17.n_75.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_17.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_18.n_71.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_18.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_19.n_60.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_19.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_1.n_1084.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_1.n_1084.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_20.n_34.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_20.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_21.n_28.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_21.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_2.n_647.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_2.n_647.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_3.n_380.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_3.n_380.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_4.n_233.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_4.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_5.n_224.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_5.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_6.n_205.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_6.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_7.n_188.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_7.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_8.n_169.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_8.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_9.n_167.CWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_9.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_0.n_1103.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_0.n_1103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_1.n_989.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_1.n_989.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_2.n_875.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_2.n_875.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_3.n_861.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_3.n_861.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_4.n_304.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_4.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_5.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_6.n_150.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_6.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_0.n_1165.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_0.n_1165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_10.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_11.n_61.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_11.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_12.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_13.n_57.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_13.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_14.n_46.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_14.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_15.n_45.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_15.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_16.n_43.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_16.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_17.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_18.n_28.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_18.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_19.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_1.n_606.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_1.n_606.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_20.n_26.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_20.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_2.n_590.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_2.n_590.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_3.n_214.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_3.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_4.n_205.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_4.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_5.n_203.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_5.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_6.n_194.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_6.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_7.n_179.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_7.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_8.n_118.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_8.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_9.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_0.n_2464.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_0.n_2464.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_10.n_289.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_10.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_11.n_277.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_11.n_277.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_12.n_262.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_12.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_13.n_162.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_13.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_14.n_132.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_14.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_15.n_110.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_15.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_16.n_99.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_16.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_17.n_80.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_17.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_18.n_75.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_18.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_19.n_63.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_19.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_1.n_1625.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_1.n_1625.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_20.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_2.n_1428.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_2.n_1428.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_3.n_1382.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_3.n_1382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_4.n_806.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_4.n_806.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_5.n_607.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_5.n_607.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_6.n_513.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_6.n_513.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_7.n_432.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_7.n_432.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_8.n_423.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_8.n_423.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_9.n_303.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_9.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_0.n_213.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_0.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_10.n_68.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_10.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_1.n_183.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_1.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_2.n_167.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_2.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_3.n_149.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_3.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_4.n_146.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_4.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_5.n_132.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_5.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_6.n_125.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_6.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_7.n_85.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_7.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_8.n_79.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_8.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_9.n_71.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_9.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_0.n_1203.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_0.n_1203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_10.n_50.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_10.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_11.n_46.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_11.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_1.n_1193.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_1.n_1193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_2.n_910.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_2.n_910.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_3.n_479.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_3.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_4.n_303.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_4.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_5.n_233.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_5.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_6.n_218.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_6.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_7.n_170.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_7.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_8.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_9.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_0.n_1250.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_0.n_1250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_1.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_0.n_611.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_0.n_611.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_10.n_217.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_10.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_11.n_215.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_11.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_12.n_210.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_12.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_13.n_173.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_13.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_14.n_150.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_14.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_15.n_142.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_15.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_16.n_124.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_16.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_17.n_121.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_17.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_18.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_19.n_75.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_19.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_1.n_388.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_1.n_388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_20.n_73.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_20.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_21.n_60.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_21.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_22.n_52.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_22.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_23.n_48.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_23.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_2.n_387.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_2.n_387.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_3.n_381.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_3.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_4.n_319.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_4.n_319.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_5.n_305.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_5.n_305.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_6.n_275.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_6.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_7.n_267.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_7.n_267.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_8.n_256.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_8.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_9.n_246.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_9.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_0.n_621.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_0.n_621.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_10.n_92.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_10.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_11.n_87.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_11.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_12.n_84.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_12.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_13.n_83.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_13.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_14.n_73.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_14.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_15.n_64.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_15.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_16.n_61.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_16.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_17.n_59.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_17.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_18.n_55.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_18.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_19.n_45.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_19.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_1.n_407.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_1.n_407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_20.n_25.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_20.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_21.n_24.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_21.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_22.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_2.n_294.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_2.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_3.n_206.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_3.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_4.n_172.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_4.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_5.n_135.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_5.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_6.n_122.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_6.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_7.n_107.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_7.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_8.n_106.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_8.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_9.n_94.CWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_9.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_0.n_46.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_0.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_1.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_0.n_3012.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_0.n_3012.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_10.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_11.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_12.n_30.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_12.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_13.n_30.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_13.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_1.n_1578.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_1.n_1578.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_2.n_1271.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_2.n_1271.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_3.n_708.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_3.n_708.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_4.n_419.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_4.n_419.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_5.n_182.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_5.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_6.n_173.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_6.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_7.n_135.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_7.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_8.n_129.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_8.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_9.n_94.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_9.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_0.n_475.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_0.n_475.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_11.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_1.n_157.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_1.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_2.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_3.n_107.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_3.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_4.n_72.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_4.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_5.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_6.n_62.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_6.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_7.n_47.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_7.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_8.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_9.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_0.n_1820.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_0.n_1820.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_10.n_47.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_10.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_11.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_12.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_13.n_27.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_13.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_14.n_24.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_14.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_1.n_1732.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_1.n_1732.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_2.n_374.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_2.n_374.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_3.n_338.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_3.n_338.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_4.n_314.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_4.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_5.n_103.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_5.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_6.n_101.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_6.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_7.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_8.n_90.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_8.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_9.n_87.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_9.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_197.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_100.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_97.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_94.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_93.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_69.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_15.n_64.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_15.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_16.n_60.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_16.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_17.n_58.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_17.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_18.n_54.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_18.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_19.n_52.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_19.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_161.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_20.n_49.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_20.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_21.n_47.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_21.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_22.n_46.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_22.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_23.n_44.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_23.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_24.n_44.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_24.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_25.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_26.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_27.n_29.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_27.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_28.n_27.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_28.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_29.n_20.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_29.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_148.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_30.n_20.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_30.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_137.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_128.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_120.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_119.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_115.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_112.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_10.n_125.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_10.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_11.n_123.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_11.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_12.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_13.n_116.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_13.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_14.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_15.n_98.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_15.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_16.n_64.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_16.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_17.n_59.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_17.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_18.n_42.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_18.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_19.n_33.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_19.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_361.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_20.n_27.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_20.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_21.n_26.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_21.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_22.n_23.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_22.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_23.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_327.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_246.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_4.n_222.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_4.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_5.n_188.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_5.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_6.n_188.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_6.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_0.n_270.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_0.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_1.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_2.n_101.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_2.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_3.n_86.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_3.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_4.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_5.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_0.n_2506.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_0.n_2506.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_10.n_97.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_10.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_11.n_97.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_11.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_12.n_83.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_12.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_13.n_82.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_13.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_14.n_71.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_14.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_15.n_60.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_15.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_16.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_17.n_36.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_17.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_18.n_35.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_18.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_1.n_1573.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_1.n_1573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_2.n_285.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_2.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_3.n_264.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_3.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_4.n_262.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_4.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_5.n_219.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_5.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_6.n_176.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_6.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_7.n_142.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_7.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_8.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_9.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_0.n_12336.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_0.n_12336.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_10.n_91.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_10.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_11.n_80.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_11.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_12.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_14.n_24.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_14.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_15.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_1.n_4754.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_1.n_4754.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_2.n_2079.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_2.n_2079.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_3.n_602.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_3.n_602.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_4.n_516.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_4.n_516.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_5.n_492.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_5.n_492.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_6.n_288.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_6.n_288.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_7.n_214.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_7.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_8.n_151.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_8.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_9.n_101.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_9.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_0.n_14799.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_0.n_14799.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_10.n_143.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_10.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_11.n_139.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_11.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_12.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_13.n_112.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_13.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_14.n_109.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_14.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_15.n_107.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_15.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_16.n_64.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_16.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_17.n_43.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_17.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_18.n_37.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_18.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_19.n_33.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_19.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_1.n_1035.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_1.n_1035.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_20.n_31.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_20.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_21.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_22.n_27.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_22.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_23.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_2.n_748.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_2.n_748.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_3.n_438.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_3.n_438.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_4.n_419.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_4.n_419.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_5.n_260.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_5.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_6.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_7.n_223.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_7.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_8.n_195.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_8.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_9.n_160.CWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_9.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_167.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_6.n_129.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_6.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_7.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_9.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_0.n_2164.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_0.n_2164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_10.n_529.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_10.n_529.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_11.n_516.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_11.n_516.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_12.n_512.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_12.n_512.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_13.n_499.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_13.n_499.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_14.n_496.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_14.n_496.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_15.n_460.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_15.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_16.n_412.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_16.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_17.n_400.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_17.n_400.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_18.n_396.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_18.n_396.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_19.n_377.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_19.n_377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_1.n_1170.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_1.n_1170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_20.n_374.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_20.n_374.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_21.n_360.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_21.n_360.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_22.n_347.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_22.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_23.n_343.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_23.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_24.n_322.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_24.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_25.n_278.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_25.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_26.n_262.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_26.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_27.n_249.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_27.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_28.n_229.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_28.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_29.n_223.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_29.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_2.n_828.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_2.n_828.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_30.n_207.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_30.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_31.n_202.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_31.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_32.n_195.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_32.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_33.n_158.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_33.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_34.n_158.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_34.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_35.n_123.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_35.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_36.n_120.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_36.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_37.n_72.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_37.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_38.n_56.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_38.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_39.n_55.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_39.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_18.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_0.n_3051.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_0.n_3051.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_10.n_166.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_10.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_11.n_150.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_11.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_12.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_13.n_78.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_13.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_14.n_58.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_14.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_15.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_16.n_41.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_16.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_17.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_1.n_2763.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_1.n_2763.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_2.n_2172.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_2.n_2172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_3.n_1811.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_3.n_1811.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_4.n_939.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_4.n_939.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_5.n_415.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_5.n_415.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_6.n_358.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_6.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_7.n_310.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_7.n_310.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_8.n_296.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_8.n_296.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_9.n_266.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_9.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_0.n_4509.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_0.n_4509.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_10.n_134.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_10.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_11.n_84.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_11.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_12.n_74.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_12.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_13.n_61.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_13.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_14.n_59.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_14.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_15.n_52.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_15.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_16.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_17.n_34.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_17.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_18.n_31.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_18.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_19.n_31.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_19.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_1.n_1908.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_1.n_1908.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_2.n_640.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_2.n_640.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_3.n_416.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_3.n_416.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_4.n_416.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_4.n_416.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_5.n_284.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_5.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_6.n_220.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_6.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_7.n_215.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_7.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_8.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_9.n_164.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_9.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_0.n_3526.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_0.n_3526.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_10.n_92.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_10.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_11.n_49.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_11.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_12.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_13.n_43.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_13.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_14.n_36.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_14.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_15.n_34.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_15.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_16.n_29.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_16.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_17.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_1.n_1439.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_1.n_1439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_2.n_1100.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_2.n_1100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_3.n_229.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_3.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_4.n_200.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_4.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_5.n_193.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_5.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_6.n_184.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_6.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_7.n_178.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_7.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_8.n_177.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_8.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_9.n_117.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_9.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_0.n_657.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_0.n_657.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_10.n_95.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_10.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_11.n_76.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_11.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_12.n_65.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_12.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_13.n_64.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_13.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_14.n_48.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_14.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_16.n_29.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_16.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_1.n_254.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_1.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_2.n_187.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_2.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_3.n_165.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_3.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_4.n_150.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_4.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_5.n_150.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_5.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_6.n_141.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_6.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_7.n_109.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_7.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_8.n_108.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_8.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_9.n_99.CWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_9.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_0.n_6347.CWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_0.n_6347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_1.n_251.CWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_1.n_251.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_2.n_167.CWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_2.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_3.n_156.CWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_3.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_4.n_96.CWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_4.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_5.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_6.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_0.n_881.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_0.n_881.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_10.n_134.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_10.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_11.n_132.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_11.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_12.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_13.n_118.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_13.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_14.n_102.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_14.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_15.n_88.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_15.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_16.n_88.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_16.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_17.n_79.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_17.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_18.n_68.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_18.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_19.n_56.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_19.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_1.n_388.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_1.n_388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_20.n_55.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_20.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_2.n_276.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_2.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_3.n_226.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_3.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_4.n_222.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_4.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_5.n_218.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_5.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_6.n_207.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_6.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_7.n_179.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_7.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_8.n_163.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_8.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_9.n_153.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_9.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_1.n_160.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_1.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_5.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_0.n_881.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_0.n_881.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_10.n_134.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_10.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_11.n_132.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_11.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_12.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_13.n_118.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_13.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_14.n_102.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_14.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_15.n_88.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_15.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_16.n_88.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_16.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_17.n_79.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_17.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_18.n_68.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_18.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_19.n_56.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_19.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_1.n_388.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_1.n_388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_20.n_55.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_20.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_2.n_276.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_2.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_3.n_226.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_3.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_4.n_222.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_4.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_5.n_218.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_5.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_6.n_207.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_6.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_7.n_179.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_7.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_8.n_163.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_8.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_9.n_153.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_9.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_1.n_160.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_1.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_5.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_0.n_1606.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_0.n_1606.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_10.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_11.n_79.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_11.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_12.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_13.n_55.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_13.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_14.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_15.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_16.n_38.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_16.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_17.n_37.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_17.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_18.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_1.n_1039.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_1.n_1039.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_2.n_436.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_2.n_436.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_3.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_4.n_127.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_4.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_5.n_119.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_5.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_6.n_92.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_6.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_7.n_91.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_7.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_8.n_90.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_8.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_9.n_87.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_9.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_0.n_510.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_0.n_510.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_10.n_124.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_10.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_11.n_110.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_11.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_12.n_86.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_12.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_13.n_57.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_13.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_14.n_49.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_14.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_15.n_43.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_15.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_16.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_17.n_31.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_17.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_18.n_21.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_18.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_1.n_441.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_1.n_441.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_2.n_436.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_2.n_436.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_3.n_297.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_3.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_4.n_296.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_4.n_296.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_5.n_294.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_5.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_6.n_235.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_6.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_7.n_218.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_7.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_8.n_204.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_8.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_9.n_203.CWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_9.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_0.n_461.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_0.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_10.n_105.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_10.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_11.n_85.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_11.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_12.n_33.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_12.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_13.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_1.n_318.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_1.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_2.n_316.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_2.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_3.n_196.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_3.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_4.n_160.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_4.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_5.n_153.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_5.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_6.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_7.n_133.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_7.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_8.n_127.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_8.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_9.n_127.CWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_9.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_10.n_373.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_10.n_373.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_12.n_101.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_12.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_13.n_76.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_13.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_17.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_874.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_874.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_862.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_862.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_742.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_742.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_697.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_697.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_502.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_502.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_7.n_490.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_7.n_490.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_8.n_406.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_8.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_9.n_402.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_9.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_0.n_3031.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_0.n_3031.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_10.n_208.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_10.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_11.n_205.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_11.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_12.n_149.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_12.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_13.n_27.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_13.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_1.n_2788.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_1.n_2788.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_2.n_1757.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_2.n_1757.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_3.n_1018.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_3.n_1018.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_4.n_991.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_4.n_991.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_5.n_568.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_5.n_568.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_6.n_556.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_6.n_556.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_7.n_464.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_7.n_464.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_8.n_311.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_8.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_9.n_218.CWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_9.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_0.n_760.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_0.n_760.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_10.n_272.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_10.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_11.n_260.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_11.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_12.n_254.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_12.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_13.n_161.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_13.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_14.n_123.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_14.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_15.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_1.n_752.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_1.n_752.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_2.n_457.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_2.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_3.n_355.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_3.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_4.n_339.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_4.n_339.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_5.n_322.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_5.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_6.n_316.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_6.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_7.n_312.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_7.n_312.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_8.n_299.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_8.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_9.n_290.CWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_9.n_290.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_0.n_6289.CWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_0.n_6289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_1.n_178.CWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_1.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_2.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_3.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_4.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_0.n_1045.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_0.n_1045.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_10.n_153.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_10.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_11.n_146.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_11.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_12.n_142.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_12.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_13.n_132.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_13.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_14.n_126.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_14.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_15.n_114.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_15.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_16.n_109.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_16.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_17.n_86.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_17.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_18.n_83.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_18.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_19.n_78.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_19.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_1.n_925.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_1.n_925.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_20.n_68.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_20.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_21.n_68.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_21.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_22.n_66.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_22.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_23.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_2.n_665.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_2.n_665.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_3.n_280.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_3.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_4.n_280.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_4.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_5.n_233.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_5.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_6.n_229.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_6.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_7.n_210.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_7.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_8.n_182.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_8.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_9.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.CWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_0.n_333.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_0.n_333.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_1.n_262.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_1.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_2.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_3.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_0.n_560.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_0.n_560.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_10.n_61.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_10.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_11.n_58.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_11.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_12.n_55.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_12.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_13.n_49.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_13.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_14.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_15.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_1.n_425.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_1.n_425.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_2.n_287.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_2.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_3.n_236.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_3.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_4.n_199.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_4.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_5.n_96.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_5.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_6.n_95.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_6.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_8.n_81.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_8.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_9.n_63.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_9.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_0.n_3450.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_0.n_3450.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_10.n_114.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_10.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_12.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_13.n_86.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_13.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_14.n_82.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_14.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_15.n_38.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_15.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_1.n_2036.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_1.n_2036.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_2.n_1210.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_2.n_1210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_3.n_598.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_3.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_4.n_507.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_4.n_507.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_5.n_425.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_5.n_425.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_6.n_407.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_6.n_407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_7.n_370.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_7.n_370.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_8.n_240.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_8.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_9.n_162.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_9.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_0.n_3450.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_0.n_3450.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_10.n_114.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_10.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_12.n_89.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_12.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_13.n_86.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_13.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_14.n_82.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_14.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_15.n_38.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_15.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_1.n_2036.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_1.n_2036.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_2.n_1210.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_2.n_1210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_3.n_598.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_3.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_4.n_507.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_4.n_507.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_5.n_425.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_5.n_425.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_6.n_407.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_6.n_407.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_7.n_370.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_7.n_370.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_8.n_240.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_8.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_9.n_162.CWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_9.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_0.n_2891.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_0.n_2891.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_10.n_106.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_10.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_11.n_72.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_11.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_12.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_13.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_14.n_31.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_14.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_1.n_2085.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_1.n_2085.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_2.n_1808.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_2.n_1808.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_3.n_1493.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_3.n_1493.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_4.n_490.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_4.n_490.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_5.n_465.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_5.n_465.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_6.n_437.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_6.n_437.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_7.n_312.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_7.n_312.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_8.n_273.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_8.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_9.n_118.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_9.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_0.n_1020.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_0.n_1020.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_10.n_324.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_10.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_11.n_290.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_11.n_290.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_12.n_213.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_12.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_13.n_124.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_13.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_14.n_95.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_14.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_15.n_82.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_15.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_16.n_67.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_16.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_17.n_43.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_17.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_1.n_1019.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_1.n_1019.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_2.n_459.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_2.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_3.n_439.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_3.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_4.n_400.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_4.n_400.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_5.n_376.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_5.n_376.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_6.n_374.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_6.n_374.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_7.n_357.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_7.n_357.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_8.n_344.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_8.n_344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_9.n_332.CWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_9.n_332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_0.n_862.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_0.n_862.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_10.n_99.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_10.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_11.n_75.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_11.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_12.n_65.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_12.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_13.n_61.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_13.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_14.n_58.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_14.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_16.n_29.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_16.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_17.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_18.n_28.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_18.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_19.n_23.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_19.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_1.n_618.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_1.n_618.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_2.n_533.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_2.n_533.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_3.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_4.n_232.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_4.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_5.n_209.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_5.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_6.n_199.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_6.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_7.n_147.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_7.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_8.n_132.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_8.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_9.n_123.CWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_9.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_0.n_474.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_0.n_474.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_10.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_1.n_343.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_1.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_2.n_152.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_2.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_3.n_127.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_3.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_4.n_121.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_4.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_5.n_115.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_5.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_6.n_83.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_6.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_7.n_73.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_7.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_8.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_9.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_79.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_63.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_9.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_0.n_2827.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_0.n_2827.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_1.n_735.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_1.n_735.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_2.n_442.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_2.n_442.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_3.n_283.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_3.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_4.n_248.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_4.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_5.n_225.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_5.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_6.n_196.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_6.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_7.n_184.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_7.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_8.n_177.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_8.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_9.n_41.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_9.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_0.n_805.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_0.n_805.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_10.n_108.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_10.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_11.n_93.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_11.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_12.n_82.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_12.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_13.n_63.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_13.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_14.n_62.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_14.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_16.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_1.n_454.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_1.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_2.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_3.n_272.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_3.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_4.n_165.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_4.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_5.n_157.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_5.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_6.n_125.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_6.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_7.n_123.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_7.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_8.n_111.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_8.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_9.n_110.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_9.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_0.n_296.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_0.n_296.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_10.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_11.n_31.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_11.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_1.n_273.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_1.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_2.n_118.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_2.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_3.n_98.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_3.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_4.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_5.n_61.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_5.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_6.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_7.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_8.n_44.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_8.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_9.n_40.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_9.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_0.n_5331.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_0.n_5331.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_10.n_155.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_10.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_11.n_116.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_11.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_12.n_79.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_12.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_13.n_53.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_13.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_15.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_1.n_2464.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_1.n_2464.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_2.n_1782.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_2.n_1782.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_3.n_1760.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_3.n_1760.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_4.n_1277.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_4.n_1277.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_5.n_567.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_5.n_567.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_6.n_550.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_6.n_550.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_7.n_517.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_7.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_8.n_364.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_8.n_364.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_9.n_233.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_9.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_0.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_10.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_11.n_27.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_11.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_13.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_1.n_122.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_1.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_2.n_121.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_2.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_3.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_4.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_5.n_68.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_5.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_6.n_67.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_6.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_7.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_8.n_43.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_8.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_9.n_41.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_9.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_0.n_2827.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_0.n_2827.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_1.n_735.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_1.n_735.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_2.n_442.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_2.n_442.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_3.n_283.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_3.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_4.n_248.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_4.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_5.n_225.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_5.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_6.n_196.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_6.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_7.n_184.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_7.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_8.n_177.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_8.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_9.n_41.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_9.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_0.n_805.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_0.n_805.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_10.n_108.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_10.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_11.n_93.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_11.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_12.n_82.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_12.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_13.n_63.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_13.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_14.n_62.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_14.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_16.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_1.n_454.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_1.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_2.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_3.n_272.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_3.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_4.n_165.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_4.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_5.n_157.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_5.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_6.n_125.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_6.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_7.n_123.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_7.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_8.n_111.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_8.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_9.n_110.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_9.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_0.n_296.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_0.n_296.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_10.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_11.n_31.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_11.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_1.n_273.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_1.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_2.n_118.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_2.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_3.n_98.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_3.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_4.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_5.n_61.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_5.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_6.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_7.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_8.n_44.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_8.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_9.n_40.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_9.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_0.n_5331.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_0.n_5331.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_10.n_155.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_10.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_11.n_116.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_11.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_12.n_79.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_12.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_13.n_53.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_13.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_15.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_1.n_2464.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_1.n_2464.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_2.n_1782.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_2.n_1782.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_3.n_1760.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_3.n_1760.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_4.n_1277.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_4.n_1277.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_5.n_567.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_5.n_567.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_6.n_550.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_6.n_550.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_7.n_517.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_7.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_8.n_364.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_8.n_364.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_9.n_233.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_9.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_0.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_10.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_11.n_27.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_11.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_13.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_1.n_122.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_1.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_2.n_121.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_2.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_3.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_4.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_5.n_68.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_5.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_6.n_67.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_6.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_7.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_8.n_43.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_8.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_9.n_41.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_9.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_0.n_8797.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_0.n_8797.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_10.n_244.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_10.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_11.n_204.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_11.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_12.n_201.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_12.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_13.n_162.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_13.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_14.n_126.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_14.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_15.n_80.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_15.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_16.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_16.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_17.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_18.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_18.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_19.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_1.n_4550.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_1.n_4550.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_2.n_504.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_2.n_504.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_3.n_417.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_3.n_417.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_4.n_377.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_4.n_377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_5.n_367.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_5.n_367.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_6.n_299.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_6.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_7.n_292.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_7.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_8.n_283.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_8.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_9.n_254.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_9.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_0.n_1457.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_0.n_1457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_10.n_429.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_10.n_429.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_11.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_11.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_12.n_325.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_12.n_325.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_13.n_292.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_13.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_14.n_282.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_14.n_282.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_15.n_224.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_15.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_16.n_221.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_16.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_17.n_216.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_17.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_18.n_206.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_18.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_19.n_201.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_19.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_1.n_1417.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_1.n_1417.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_20.n_176.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_20.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_21.n_168.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_21.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_22.n_144.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_22.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_23.n_134.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_23.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_24.n_123.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_24.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_25.n_111.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_25.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_26.n_104.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_26.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_27.n_75.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_27.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_28.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_28.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_29.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_2.n_1390.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_2.n_1390.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_30.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_30.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_3.n_1084.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_3.n_1084.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_4.n_674.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_4.n_674.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_5.n_664.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_5.n_664.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_6.n_649.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_6.n_649.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_7.n_594.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_7.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_8.n_579.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_8.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_9.n_466.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_9.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_0.n_2902.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_0.n_2902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_10.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_1.n_1520.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_1.n_1520.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_2.n_1160.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_2.n_1160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_3.n_647.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_3.n_647.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_4.n_449.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_4.n_449.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_5.n_171.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_5.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_6.n_113.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_6.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_7.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_7.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_8.n_53.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_8.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_9.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_0.n_4497.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_0.n_4497.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_10.n_531.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_10.n_531.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_11.n_470.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_11.n_470.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_12.n_230.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_12.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_13.n_142.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_13.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_14.n_114.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_14.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_15.n_89.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_15.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_16.n_84.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_16.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_17.n_83.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_17.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_18.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_18.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_19.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_19.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_1.n_3820.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_1.n_3820.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_20.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_20.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_21.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_21.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_22.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_22.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_23.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_24.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_24.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_2.n_1368.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_2.n_1368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_3.n_1254.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_3.n_1254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_4.n_1093.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_4.n_1093.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_5.n_874.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_5.n_874.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_6.n_860.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_6.n_860.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_7.n_814.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_7.n_814.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_8.n_680.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_8.n_680.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_9.n_671.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_9.n_671.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_0.n_9955.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_0.n_9955.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_10.n_118.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_10.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_11.n_99.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_11.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_12.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_12.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_13.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_13.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_14.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_15.n_62.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_15.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_16.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_16.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_17.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_18.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_18.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_19.n_44.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_19.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_1.n_7014.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_1.n_7014.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_20.n_44.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_20.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_21.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_21.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_22.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_2.n_1067.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_2.n_1067.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_3.n_554.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_3.n_554.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_4.n_439.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_4.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_5.n_398.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_5.n_398.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_6.n_366.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_6.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_7.n_360.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_7.n_360.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_8.n_144.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_8.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_9.n_121.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_9.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_0.n_2595.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_0.n_2595.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_10.n_108.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_10.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_11.n_99.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_11.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_12.n_98.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_12.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_13.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_14.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_14.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_15.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_15.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_16.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_1.n_980.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_1.n_980.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_2.n_484.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_2.n_484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_3.n_482.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_3.n_482.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_4.n_264.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_4.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_5.n_226.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_5.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_6.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_7.n_138.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_7.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_8.n_117.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_8.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_9.n_111.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_9.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_0.n_6485.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_0.n_6485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_10.n_232.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_10.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_11.n_163.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_11.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_12.n_115.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_12.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_13.n_43.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_13.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_14.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_1.n_6131.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_1.n_6131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_2.n_844.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_2.n_844.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_3.n_842.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_3.n_842.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_4.n_604.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_4.n_604.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_5.n_415.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_5.n_415.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_6.n_325.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_6.n_325.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_7.n_298.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_7.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_8.n_269.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_8.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_9.n_235.CWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_9.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_0.n_927.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_0.n_927.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_10.n_215.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_10.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_11.n_213.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_11.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_12.n_203.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_12.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_13.n_201.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_13.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_14.n_130.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_14.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_15.n_101.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_15.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_16.n_71.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_16.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_17.n_63.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_17.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_18.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_18.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_19.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_19.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_1.n_306.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_1.n_306.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_20.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_20.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_21.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_22.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_22.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_23.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_23.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_2.n_294.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_2.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_3.n_291.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_3.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_4.n_287.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_4.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_5.n_284.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_5.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_6.n_266.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_6.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_7.n_254.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_7.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_8.n_247.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_8.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_9.n_232.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_9.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_0.n_2595.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_0.n_2595.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_10.n_336.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_10.n_336.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_11.n_323.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_11.n_323.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_12.n_315.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_12.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_13.n_191.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_13.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_14.n_181.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_14.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_15.n_158.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_15.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_16.n_133.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_16.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_17.n_90.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_17.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_18.n_76.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_18.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_19.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_1.n_1900.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_1.n_1900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_20.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_20.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_21.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_2.n_1673.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_2.n_1673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_3.n_1124.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_3.n_1124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_4.n_890.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_4.n_890.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_5.n_677.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_5.n_677.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_6.n_649.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_6.n_649.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_7.n_588.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_7.n_588.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_8.n_451.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_8.n_451.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_9.n_337.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_9.n_337.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_0.n_946.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_0.n_946.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_10.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_1.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_1.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_2.n_208.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_2.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_3.n_94.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_3.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_4.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_5.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_6.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_7.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_8.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_9.n_44.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_9.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_0.n_906.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_0.n_906.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_10.n_226.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_10.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_11.n_224.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_11.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_12.n_210.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_12.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_13.n_190.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_13.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_14.n_108.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_14.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_15.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_1.n_893.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_1.n_893.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_2.n_579.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_2.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_3.n_476.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_3.n_476.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_4.n_413.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_4.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_5.n_347.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_5.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_6.n_255.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_6.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_7.n_245.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_7.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_8.n_236.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_8.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_9.n_228.CWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_9.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.CWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_6.n_253.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_6.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_0.n_817.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_0.n_817.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_10.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_11.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_11.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_12.n_45.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_12.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_13.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_13.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_1.n_706.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_1.n_706.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_2.n_504.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_2.n_504.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_3.n_321.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_3.n_321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_4.n_221.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_4.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_5.n_115.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_5.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_6.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_7.n_86.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_7.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_8.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_9.n_69.CWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_9.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_2.n_347.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_2.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_2.n_347.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_2.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_2.n_347.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_2.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_0.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_0.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_10.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_1.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_2.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_3.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_4.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_5.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_6.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_9.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_1.n_269.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_1.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_2.n_217.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_2.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_3.n_146.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_3.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_4.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_5.n_112.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_5.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_6.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_7.n_73.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_7.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_8.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_9.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_9.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_0.n_269.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_0.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_10.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_10.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_11.n_71.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_11.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_12.n_67.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_12.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_13.n_64.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_13.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_14.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_14.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_15.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_15.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_16.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_16.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_17.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_18.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_18.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_19.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_19.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_1.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_20.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_20.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_22.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_23.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_24.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_2.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_2.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_3.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_3.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_4.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_5.n_95.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_5.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_6.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_7.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_7.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_8.n_86.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_8.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_9.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_9.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_0.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_0.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_10.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_1.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_2.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_3.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_4.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_5.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_6.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_9.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_1.n_269.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_1.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_2.n_217.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_2.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_3.n_146.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_3.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_4.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_5.n_112.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_5.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_6.n_77.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_6.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_7.n_73.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_7.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_8.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_9.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_9.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_0.n_269.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_0.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_10.n_78.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_10.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_11.n_71.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_11.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_12.n_67.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_12.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_13.n_64.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_13.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_14.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_14.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_15.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_15.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_16.n_57.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_16.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_17.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_18.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_18.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_19.n_46.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_19.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_1.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_20.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_20.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_22.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_23.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_24.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_2.n_140.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_2.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_3.n_128.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_3.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_4.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_5.n_95.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_5.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_6.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_7.n_87.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_7.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_8.n_86.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_8.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_9.n_81.CWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_9.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_0.n_4956.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_0.n_4956.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_10.n_241.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_10.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_11.n_222.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_11.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_12.n_171.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_12.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_13.n_154.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_13.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_1.n_3078.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_1.n_3078.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_2.n_989.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_2.n_989.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_3.n_892.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_3.n_892.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_4.n_755.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_4.n_755.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_5.n_688.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_5.n_688.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_6.n_645.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_6.n_645.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_7.n_451.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_7.n_451.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_8.n_427.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_8.n_427.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_9.n_347.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_9.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_0.n_525.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_0.n_525.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_10.n_142.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_10.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_11.n_141.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_11.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_12.n_141.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_12.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_13.n_126.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_13.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_14.n_121.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_14.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_15.n_113.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_15.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_16.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_17.n_62.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_17.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_18.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_19.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_1.n_319.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_1.n_319.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_2.n_318.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_2.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_3.n_222.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_3.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_4.n_211.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_4.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_5.n_202.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_5.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_6.n_194.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_6.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_7.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_8.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_9.n_148.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_9.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_0.n_4956.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_0.n_4956.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_10.n_241.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_10.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_11.n_222.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_11.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_12.n_171.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_12.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_13.n_154.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_13.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_1.n_3078.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_1.n_3078.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_2.n_989.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_2.n_989.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_3.n_892.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_3.n_892.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_4.n_755.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_4.n_755.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_5.n_688.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_5.n_688.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_6.n_645.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_6.n_645.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_7.n_451.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_7.n_451.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_8.n_427.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_8.n_427.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_9.n_347.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_9.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_0.n_525.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_0.n_525.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_10.n_142.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_10.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_11.n_141.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_11.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_12.n_141.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_12.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_13.n_126.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_13.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_14.n_121.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_14.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_15.n_113.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_15.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_16.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_17.n_62.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_17.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_18.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_19.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_1.n_319.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_1.n_319.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_2.n_318.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_2.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_3.n_222.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_3.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_4.n_211.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_4.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_5.n_202.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_5.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_6.n_194.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_6.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_7.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_8.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_9.n_148.CWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_9.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_0.n_5510.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_0.n_5510.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_10.n_241.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_10.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_11.n_190.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_11.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_12.n_156.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_12.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_13.n_152.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_13.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_14.n_110.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_14.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_15.n_83.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_15.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_16.n_47.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_16.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_17.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_18.n_23.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_18.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_19.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_1.n_4580.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_1.n_4580.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_2.n_4045.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_2.n_4045.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_3.n_2471.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_3.n_2471.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_4.n_2363.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_4.n_2363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_5.n_2295.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_5.n_2295.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_6.n_1541.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_6.n_1541.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_7.n_1531.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_7.n_1531.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_8.n_1067.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_8.n_1067.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_9.n_575.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-HepG2-ENCSR407BPU.bestfold.profile.pattern_9.n_575.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_0.n_1539.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_0.n_1539.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_10.n_95.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_10.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_11.n_77.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_11.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_12.n_67.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_12.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_13.n_65.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_13.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_14.n_56.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_14.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_15.n_43.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_15.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_16.n_39.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_16.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_17.n_34.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_17.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_1.n_351.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_1.n_351.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_2.n_297.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_2.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_3.n_207.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_3.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_4.n_152.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_4.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_5.n_145.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_5.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_6.n_139.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_6.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_7.n_137.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_7.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_8.n_135.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_8.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF609-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_9.n_104.PWM.meme motif-alignments-all-vs-all/ZNF609/ZNF609-201-vs-ZNF609-K562-ENCSR940PYZ.bestfold.profile.pattern_9.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ZNF585A-HEK538-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_0.n_1423.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_0.n_1423.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_10.n_376.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_10.n_376.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_11.n_319.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_11.n_319.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_12.n_305.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_12.n_305.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_13.n_112.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_13.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_14.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_15.n_34.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_15.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_16.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_1.n_1306.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_1.n_1306.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_2.n_1163.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_2.n_1163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_3.n_781.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_3.n_781.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_4.n_724.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_4.n_724.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_5.n_607.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_5.n_607.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_6.n_482.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_6.n_482.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_7.n_476.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_7.n_476.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_8.n_402.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_8.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_9.n_384.PWM.meme motif-alignments-all-vs-all/ZNF709/ZNF709-201-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_9.n_384.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_0.n_984.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_0.n_984.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_10.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_11.n_52.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_11.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_12.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_13.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_1.n_576.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_1.n_576.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_2.n_333.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_2.n_333.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_3.n_329.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_3.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_4.n_328.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_4.n_328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_5.n_283.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_5.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_7.n_172.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_7.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_8.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_9.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HEK628-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_0.n_984.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_0.n_984.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_10.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_11.n_52.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_11.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_12.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_13.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_1.n_576.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_1.n_576.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_2.n_333.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_2.n_333.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_3.n_329.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_3.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_4.n_328.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_4.n_328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_5.n_283.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_5.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_7.n_172.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_7.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_8.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ZNF879-HepG2-ENCSR073OBD.bestfold.profile.pattern_9.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_0.n_2004.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_0.n_2004.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_10.n_272.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_10.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_11.n_261.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_11.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_12.n_216.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_12.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_13.n_184.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_13.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_14.n_136.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_14.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_15.n_129.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_15.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_16.n_126.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_16.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_17.n_125.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_17.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_18.n_124.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_18.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_19.n_94.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_19.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_1.n_1835.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_1.n_1835.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_20.n_94.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_20.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_21.n_84.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_21.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_2.n_1185.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_2.n_1185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_3.n_751.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_3.n_751.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_4.n_653.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_4.n_653.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_5.n_386.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_5.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_6.n_358.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_6.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_7.n_323.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_7.n_323.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_8.n_312.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_8.n_312.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF878-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_9.n_293.PWM.meme motif-alignments-all-vs-all/ZNF878/ZNF878-201-vs-ZNF878-HepG2-ENCSR907PAR.bestfold.profile.pattern_9.n_293.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_0.n_1174.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_0.n_1174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_10.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_11.n_71.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_11.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_12.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_13.n_43.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_13.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_14.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_15.n_38.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_15.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_16.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_17.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_1.n_813.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_1.n_813.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_2.n_395.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_2.n_395.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_3.n_295.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_3.n_295.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_4.n_271.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_4.n_271.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_5.n_222.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_5.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_6.n_170.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_6.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_7.n_131.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_7.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_8.n_122.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_8.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/ZNF703/ZNF703-201-vs-ZNF703-HepG2-ENCSR400JHG.bestfold.profile.pattern_9.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_0.n_322.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_0.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_10.n_63.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_10.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_11.n_60.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_11.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_12.n_58.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_12.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_13.n_56.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_13.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_16.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_17.n_43.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_17.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_19.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_1.n_274.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_1.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_20.n_25.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_20.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_21.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_2.n_138.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_2.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_3.n_98.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_3.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_4.n_95.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_4.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_5.n_94.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_5.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_6.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_7.n_86.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_7.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_8.n_76.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_8.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_9.n_63.PWM.meme motif-alignments-all-vs-all/ZNF700/ZNF700-201-vs-ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_9.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_0.n_1422.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_0.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_1.n_409.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_1.n_409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_2.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_3.n_98.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_3.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_4.n_84.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_4.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK293-ENCSR854IPI.bestfold.profile.pattern_5.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HEK581-ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_0.n_1107.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_0.n_1107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_10.n_46.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_10.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_11.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_1.n_569.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_1.n_569.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_2.n_224.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_2.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_3.n_184.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_3.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_4.n_178.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_4.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_5.n_156.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_5.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_6.n_107.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_6.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_7.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_8.n_64.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_8.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-HepG2-ENCSR017XHZ.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_0.n_1098.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_0.n_1098.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_10.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_11.n_52.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_11.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_12.n_30.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_12.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_13.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_1.n_737.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_1.n_737.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_2.n_446.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_2.n_446.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_3.n_285.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_3.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_4.n_97.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_4.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_5.n_95.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_5.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_6.n_88.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_6.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_7.n_88.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_7.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_8.n_74.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_8.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_9.n_61.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ZNF707-K562-ENCSR077TKJ.bestfold.profile.pattern_9.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_0.n_491.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_0.n_491.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_1.n_349.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_1.n_349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_2.n_243.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_2.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HEK293-ENCSR194KWL.bestfold.profile.pattern_3.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_0.n_1582.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_0.n_1582.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_10.n_78.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_10.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_1.n_1366.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_1.n_1366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_2.n_1178.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_2.n_1178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_3.n_658.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_3.n_658.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_4.n_423.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_4.n_423.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_5.n_393.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_5.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_6.n_325.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_6.n_325.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_7.n_193.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_7.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_8.n_177.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_8.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_9.n_168.PWM.meme motif-alignments-all-vs-all/ZNF704/ZNF704-201-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_9.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_0.n_4043.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_0.n_4043.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_10.n_363.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_10.n_363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_11.n_296.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_11.n_296.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_12.n_252.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_12.n_252.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_13.n_250.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_13.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_14.n_228.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_14.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_15.n_157.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_15.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_16.n_127.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_16.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_17.n_120.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_17.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_18.n_113.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_18.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_19.n_105.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_19.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_1.n_2491.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_1.n_2491.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_20.n_87.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_20.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_21.n_40.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_21.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_22.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_23.n_20.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_23.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_2.n_652.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_2.n_652.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_3.n_555.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_3.n_555.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_4.n_532.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_4.n_532.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_5.n_468.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_5.n_468.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_6.n_457.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_6.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_7.n_440.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_7.n_440.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_8.n_428.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_8.n_428.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMYM2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_9.n_375.PWM.meme motif-alignments-all-vs-all/ZMYM2/ZMYM2-201-vs-ZMYM2-HepG2-ENCSR066EWR.bestfold.profile.pattern_9.n_375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK480-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK480-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF45-HEK480-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ZNF45-HEK480-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HEK472-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_0.n_1807.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_0.n_1807.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_10.n_51.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_10.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_11.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_12.n_30.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_12.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_1.n_1370.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_1.n_1370.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_2.n_1076.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_2.n_1076.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_3.n_442.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_3.n_442.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_4.n_326.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_4.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_5.n_211.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_5.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_6.n_204.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_6.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_7.n_157.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_7.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_8.n_126.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_8.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-HEK458-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_0.n_1310.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_0.n_1310.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_10.n_163.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_10.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_11.n_84.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_11.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_12.n_81.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_12.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_13.n_72.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_13.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_14.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_15.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_16.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_17.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_1.n_512.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_1.n_512.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_2.n_231.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_2.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_3.n_210.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_3.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_4.n_207.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_4.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_5.n_201.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_5.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_6.n_195.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_6.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_7.n_188.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_7.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_8.n_184.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_8.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_9.n_183.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_9.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_0.n_10966.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_0.n_10966.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_10.n_482.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_10.n_482.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_11.n_409.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_11.n_409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_12.n_396.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_12.n_396.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_13.n_287.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_13.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_14.n_273.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_14.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_15.n_264.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_15.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_16.n_264.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_16.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_17.n_236.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_17.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_18.n_229.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_18.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_19.n_130.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_19.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_1.n_3205.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_1.n_3205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_20.n_109.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_20.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_21.n_70.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_21.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_22.n_40.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_22.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_23.n_34.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_23.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_24.n_28.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_24.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_25.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_26.n_22.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_26.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_27.n_22.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_27.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_2.n_3028.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_2.n_3028.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_3.n_3007.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_3.n_3007.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_4.n_2743.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_4.n_2743.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_5.n_2705.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_5.n_2705.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_6.n_2266.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_6.n_2266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_7.n_724.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_7.n_724.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_8.n_566.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_8.n_566.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-A549-ENCSR000BPE.bestfold.profile.pattern_9.n_538.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-A549-ENCSR000BPE.bestfold.profile.pattern_9.n_538.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_0.n_3935.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_0.n_3935.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_10.n_80.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_10.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_11.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_12.n_63.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_12.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_13.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_1.n_1206.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_1.n_1206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_2.n_1045.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_2.n_1045.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_3.n_754.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_3.n_754.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_4.n_693.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_4.n_693.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_5.n_653.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_5.n_653.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_6.n_528.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_6.n_528.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_7.n_471.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_7.n_471.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_8.n_137.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_8.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_9.n_104.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-GM12878-ENCSR000BHK.bestfold.profile.pattern_9.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_0.n_5288.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_0.n_5288.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_10.n_378.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_10.n_378.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_11.n_318.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_11.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_12.n_300.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_12.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_13.n_283.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_13.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_14.n_211.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_14.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_15.n_159.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_15.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_16.n_117.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_16.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_17.n_86.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_17.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_18.n_60.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_18.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_19.n_46.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_19.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_1.n_1811.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_1.n_1811.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_20.n_23.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_20.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_2.n_1806.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_2.n_1806.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_3.n_1302.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_3.n_1302.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_4.n_1176.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_4.n_1176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_5.n_1085.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_5.n_1085.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_6.n_764.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_6.n_764.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_7.n_597.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_7.n_597.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_8.n_414.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_8.n_414.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-H1-ENCSR000BIR.bestfold.profile.pattern_9.n_413.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-H1-ENCSR000BIR.bestfold.profile.pattern_9.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_0.n_14853.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_0.n_14853.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_10.n_268.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_10.n_268.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_11.n_222.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_11.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_12.n_130.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_12.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_13.n_103.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_13.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_14.n_80.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_14.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_15.n_80.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_15.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_16.n_70.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_16.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_17.n_58.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_17.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_18.n_43.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_18.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_19.n_40.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_19.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_1.n_3341.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_1.n_3341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_20.n_27.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_20.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_2.n_1675.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_2.n_1675.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_3.n_1056.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_3.n_1056.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_4.n_1042.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_4.n_1042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_5.n_985.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_5.n_985.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_6.n_678.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_6.n_678.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_7.n_589.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_7.n_589.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_8.n_573.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_8.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_9.n_377.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HCT116-ENCSR000BSF.bestfold.profile.pattern_9.n_377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_0.n_110.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_0.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_1.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_2.n_72.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_2.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_3.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_4.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_5.n_54.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_5.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_6.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_8.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK293T-ENCSR906PEI.bestfold.profile.pattern_9.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_10.n_181.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_10.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_11.n_161.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_11.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_12.n_140.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_12.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_13.n_111.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_13.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_14.n_90.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_14.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_15.n_59.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_15.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_16.n_59.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_16.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_17.n_53.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_17.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_18.n_53.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_18.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_19.n_45.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_19.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_1.n_662.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_1.n_662.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_20.n_41.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_20.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_22.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_0.n_9566.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_0.n_9566.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_10.n_141.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_10.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_11.n_77.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_11.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_12.n_49.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_12.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_13.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_14.n_36.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_14.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_15.n_35.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_15.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_16.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_1.n_3402.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_1.n_3402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_2.n_2761.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_2.n_2761.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_3.n_2600.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_3.n_2600.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_4.n_2471.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_4.n_2471.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_5.n_1576.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_5.n_1576.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_6.n_1267.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_6.n_1267.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_7.n_1096.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_7.n_1096.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_8.n_809.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_8.n_809.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_9.n_551.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR000BJX.bestfold.profile.pattern_9.n_551.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_0.n_453.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_0.n_453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_10.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_1.n_101.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_1.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_2.n_73.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_2.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_3.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_4.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_5.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_6.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_7.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_8.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR334KIQ.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_0.n_5377.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_0.n_5377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_10.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_11.n_31.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_11.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_1.n_1621.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_1.n_1621.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_2.n_963.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_2.n_963.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_3.n_694.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_3.n_694.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_4.n_164.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_4.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_5.n_114.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_5.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_6.n_107.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_6.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_7.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_8.n_80.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_8.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_9.n_78.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-HepG2-ENCSR460YAM.bestfold.profile.pattern_9.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_0.n_4372.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_0.n_4372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_1.n_1459.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_1.n_1459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_2.n_493.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_2.n_493.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_3.n_230.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_3.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_4.n_208.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_4.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR000BKO.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR000BKO.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_0.n_5595.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_0.n_5595.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_10.n_171.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_10.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_11.n_165.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_11.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_12.n_144.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_12.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_13.n_61.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_13.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_14.n_58.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_14.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_15.n_54.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_15.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_16.n_47.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_16.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_17.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_18.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_19.n_20.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_19.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_1.n_2444.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_1.n_2444.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_2.n_789.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_2.n_789.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_3.n_580.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_3.n_580.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_4.n_457.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_4.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_5.n_381.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_5.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_6.n_363.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_6.n_363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_7.n_333.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_7.n_333.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_8.n_304.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_8.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-K562-ENCSR372IML.bestfold.profile.pattern_9.n_200.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-K562-ENCSR372IML.bestfold.profile.pattern_9.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_0.n_13824.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_0.n_13824.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_10.n_492.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_10.n_492.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_11.n_276.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_11.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_12.n_260.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_12.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_13.n_143.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_13.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_14.n_108.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_14.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_15.n_58.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_15.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_17.n_39.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_17.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_1.n_9758.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_1.n_9758.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_2.n_3244.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_2.n_3244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_3.n_2916.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_3.n_2916.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_4.n_2866.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_4.n_2866.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_5.n_1536.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_5.n_1536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_6.n_1117.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_6.n_1117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_7.n_845.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_7.n_845.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_8.n_614.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_8.n_614.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR085IXF.bestfold.profile.pattern_9.n_566.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR085IXF.bestfold.profile.pattern_9.n_566.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_0.n_13753.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_0.n_13753.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_10.n_693.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_10.n_693.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_11.n_336.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_11.n_336.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_12.n_232.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_12.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_13.n_126.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_13.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_14.n_68.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_14.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_15.n_48.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_15.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_16.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_17.n_33.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_17.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_18.n_32.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_18.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_19.n_31.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_19.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_1.n_6071.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_1.n_6071.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_20.n_30.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_20.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_2.n_4373.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_2.n_4373.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_3.n_3543.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_3.n_3543.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_4.n_2442.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_4.n_2442.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_5.n_1772.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_5.n_1772.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_6.n_1269.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_6.n_1269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_7.n_1222.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_7.n_1222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_8.n_1198.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_8.n_1198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-liver-ENCSR386YIH.bestfold.profile.pattern_9.n_702.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-liver-ENCSR386YIH.bestfold.profile.pattern_9.n_702.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_0.n_490.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_0.n_490.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_10.n_83.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_10.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_11.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_12.n_63.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_12.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_13.n_49.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_13.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_14.n_33.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_14.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_15.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_1.n_372.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_1.n_372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_2.n_148.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_2.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_3.n_138.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_3.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_4.n_102.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_4.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_5.n_96.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_5.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_6.n_90.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_6.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_7.n_88.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_7.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_8.n_85.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_8.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_9.n_83.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-MCF-7-ENCSR729LGA.bestfold.profile.pattern_9.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_0.n_5790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_10.n_203.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_10.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_11.n_172.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_11.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_12.n_161.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_12.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_13.n_136.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_13.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_14.n_130.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_14.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_15.n_124.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_15.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_16.n_111.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_16.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_17.n_91.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_17.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_18.n_69.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_18.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_19.n_62.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_19.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_1.n_2080.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_1.n_2080.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_20.n_55.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_20.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_21.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_2.n_1204.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_2.n_1204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_3.n_827.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_3.n_827.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_4.n_717.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_4.n_717.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_5.n_531.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_5.n_531.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_6.n_429.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_6.n_429.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_7.n_327.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_7.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_8.n_252.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_8.n_252.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_9.n_219.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-SP1-WTC11-ENCSR583CGO.bestfold.profile.pattern_9.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-H1-ENCSR000BQG.bestfold.profile.pattern_0.n_1592.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-H1-ENCSR000BQG.bestfold.profile.pattern_0.n_1592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-H1-ENCSR000BQG.bestfold.profile.pattern_1.n_321.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-H1-ENCSR000BQG.bestfold.profile.pattern_1.n_321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-H1-ENCSR000BQG.bestfold.profile.pattern_2.n_159.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-H1-ENCSR000BQG.bestfold.profile.pattern_2.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-H1-ENCSR000BQG.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-H1-ENCSR000BQG.bestfold.profile.pattern_3.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_0.n_11756.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_0.n_11756.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_10.n_43.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_10.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_11.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_12.n_38.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_12.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_13.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_14.n_32.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_14.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_15.n_29.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_15.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_16.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_17.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_1.n_6151.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_1.n_6151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_2.n_3050.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_2.n_3050.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_3.n_2190.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_3.n_2190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_4.n_719.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_4.n_719.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_5.n_483.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_5.n_483.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_6.n_435.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_6.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_7.n_406.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_7.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_8.n_243.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_8.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_9.n_109.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK293-ENCSR807LQP.bestfold.profile.pattern_9.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_10.n_379.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_10.n_379.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_11.n_378.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_11.n_378.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_12.n_358.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_12.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_13.n_332.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_13.n_332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_14.n_275.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_14.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_15.n_267.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_15.n_267.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_16.n_251.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_16.n_251.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_17.n_223.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_17.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_18.n_198.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_18.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_19.n_191.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_19.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_1.n_1143.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_1.n_1143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_20.n_151.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_20.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_21.n_138.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_21.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_22.n_138.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_22.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_23.n_113.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_23.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_24.n_104.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_24.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_25.n_101.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_25.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_26.n_92.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_26.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_27.n_89.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_27.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_28.n_78.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_28.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_29.n_76.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_29.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_2.n_848.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_2.n_848.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_30.n_73.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_30.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_31.n_66.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_31.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_32.n_61.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_32.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_33.n_57.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_33.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_34.n_57.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_34.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_35.n_56.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_35.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_36.n_56.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_36.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_37.n_52.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_37.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_38.n_41.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_38.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_39.n_35.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_39.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_3.n_698.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_3.n_698.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_40.n_34.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_40.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_4.n_573.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_4.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_5.n_557.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_5.n_557.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_6.n_550.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_6.n_550.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_7.n_495.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_7.n_495.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_8.n_442.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_8.n_442.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_9.n_381.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_9.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_0.n_406.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_0.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_1.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_2.n_129.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_2.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_3.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR000BOU.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_0.n_5225.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_0.n_5225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_1.n_3099.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_1.n_3099.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_2.n_2018.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_2.n_2018.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_3.n_349.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_3.n_349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_4.n_159.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_4.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_5.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_6.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_8.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-HepG2-ENCSR946RZN.bestfold.profile.pattern_9.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_0.n_2515.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_0.n_2515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_1.n_440.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_1.n_440.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_2.n_356.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_2.n_356.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_3.n_249.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_3.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_4.n_176.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_4.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_5.n_149.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_5.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_6.n_125.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_6.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP2-K562-ENCSR000BNL.bestfold.profile.pattern_7.n_95.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-SP2-K562-ENCSR000BNL.bestfold.profile.pattern_7.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_0.n_1734.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_0.n_1734.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_1.n_829.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_1.n_829.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_2.n_613.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_2.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_3.n_599.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_3.n_599.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_4.n_168.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_4.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_5.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_6.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_7.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-H1-ENCSR000BQV.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-H1-ENCSR000BQV.bestfold.profile.pattern_8.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_0.n_6340.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_0.n_6340.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_10.n_59.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_10.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_11.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_12.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_13.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_1.n_3790.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_1.n_3790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_2.n_1751.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_2.n_1751.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_3.n_928.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_3.n_928.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_4.n_362.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_4.n_362.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_5.n_265.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_5.n_265.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_6.n_245.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_6.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_7.n_97.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_7.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_8.n_83.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_8.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-SP4-HepG2-ENCSR642PQK.bestfold.profile.pattern_9.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-201-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-206-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_0.n_5275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_10.n_575.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_11.n_552.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_12.n_541.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_13.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_14.n_483.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_15.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_16.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_17.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_18.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_19.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_1.n_3519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_20.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_21.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_22.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_23.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_24.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_25.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_26.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_27.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_2.n_2177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_3.n_1132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_4.n_1111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_5.n_1046.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_6.n_1025.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_7.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_8.n_652.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-GM12878-ENCSR859FDL.bestfold.profile.pattern_9.n_627.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_0.n_5699.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_10.n_1080.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_11.n_625.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_12.n_368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_13.n_335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_14.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_15.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_16.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_17.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_18.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_19.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_1.n_4389.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_20.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_21.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_22.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_23.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_24.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_25.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_26.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_27.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_2.n_4062.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_3.n_3438.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_4.n_2321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_5.n_1540.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_6.n_1517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_7.n_1447.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_8.n_1429.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-HepG2-ENCSR647PSR.bestfold.profile.pattern_9.n_1232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_10.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_11.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_12.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_13.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_14.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_15.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_16.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_17.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_18.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_19.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_1.n_867.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_2.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_3.n_464.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_4.n_430.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_5.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_6.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_7.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_8.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.PWM.meme motif-alignments-all-vs-all/ZNF687/ZNF687-207-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_9.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_0.n_31.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_0.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HEK293-ENCSR517DDU.bestfold.profile.pattern_2.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_0.n_5848.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_0.n_5848.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_10.n_273.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_10.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_11.n_190.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_11.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_12.n_133.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_12.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_13.n_57.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_13.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_14.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_15.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_16.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_17.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_18.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_1.n_4508.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_1.n_4508.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_2.n_2395.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_2.n_2395.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_3.n_1928.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_3.n_1928.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_4.n_796.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_4.n_796.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_5.n_582.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_5.n_582.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_6.n_530.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_6.n_530.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_7.n_458.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_7.n_458.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_8.n_368.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_8.n_368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF48-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_9.n_278.PWM.meme motif-alignments-all-vs-all/ZNF48/ZNF48-201-vs-ZNF48-HepG2-ENCSR415AEB.bestfold.profile.pattern_9.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_0.n_2361.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_0.n_2361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_10.n_118.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_10.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_11.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_11.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_12.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_12.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_13.n_37.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_13.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_14.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_1.n_1573.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_1.n_1573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_2.n_1289.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_2.n_1289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_3.n_855.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_3.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_4.n_344.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_4.n_344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_5.n_312.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_5.n_312.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_6.n_289.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_6.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_7.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_8.n_206.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_8.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_9.n_135.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-A549-ENCSR000BPZ.bestfold.profile.pattern_9.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_0.n_1249.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_0.n_1249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_1.n_236.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_1.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_2.n_162.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_2.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_3.n_155.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_3.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_5.n_101.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_5.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_6.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_7.n_64.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_7.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_8.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR000BHC.bestfold.profile.pattern_9.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_0.n_4974.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_0.n_4974.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_10.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_10.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_12.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_13.n_29.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_13.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_1.n_774.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_1.n_774.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_2.n_328.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_2.n_328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_3.n_195.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_3.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_4.n_187.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_4.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_5.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_5.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_6.n_142.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_6.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_7.n_111.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_7.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_8.n_97.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_8.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_9.n_95.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-GM12878-ENCSR542FLV.bestfold.profile.pattern_9.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_0.n_1567.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_0.n_1567.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_1.n_1268.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_1.n_1268.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_2.n_785.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_2.n_785.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_3.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_3.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_4.n_241.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_4.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_5.n_42.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_5.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HCT116-ENCSR000BNY.bestfold.profile.pattern_6.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_0.n_1151.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_0.n_1151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_1.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_2.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_2.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_3.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_4.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_5.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_5.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_6.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_7.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_8.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BHR.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_0.n_1409.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_0.n_1409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_1.n_155.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_1.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_2.n_108.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_2.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_3.n_107.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_3.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_4.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_4.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_5.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_6.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR000BNA.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_0.n_15649.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_0.n_15649.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_10.n_274.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_10.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_11.n_270.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_11.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_12.n_258.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_12.n_258.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_13.n_229.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_13.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_14.n_195.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_14.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_15.n_188.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_15.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_16.n_185.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_16.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_17.n_177.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_17.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_18.n_148.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_18.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_19.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_19.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_1.n_4136.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_1.n_4136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_20.n_85.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_20.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_21.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_21.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_22.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_22.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_23.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_23.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_24.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_24.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_25.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_25.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_26.n_36.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_26.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_27.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_27.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_28.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_28.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_2.n_1987.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_2.n_1987.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_3.n_1150.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_3.n_1150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_4.n_835.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_4.n_835.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_5.n_652.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_5.n_652.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_6.n_577.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_6.n_577.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_7.n_468.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_7.n_468.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_8.n_334.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_8.n_334.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_9.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-HepG2-ENCSR421DAO.bestfold.profile.pattern_9.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_0.n_2445.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_0.n_2445.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_1.n_493.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_1.n_493.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_2.n_365.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_2.n_365.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_3.n_181.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_3.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_4.n_97.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_4.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_5.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR000BKF.bestfold.profile.pattern_7.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_0.n_20892.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_0.n_20892.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_10.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_10.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_11.n_123.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_11.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_12.n_112.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_12.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_13.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_14.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_14.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_15.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_15.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_16.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_16.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_17.n_60.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_17.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_18.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_18.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_19.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_1.n_2377.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_1.n_2377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_2.n_917.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_2.n_917.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_3.n_859.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_3.n_859.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_4.n_690.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_4.n_690.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_5.n_583.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_5.n_583.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_6.n_359.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_6.n_359.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_7.n_355.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_7.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_8.n_235.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_8.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_9.n_195.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR876GXA.bestfold.profile.pattern_9.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_0.n_20420.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_0.n_20420.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_10.n_214.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_10.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_11.n_208.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_11.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_12.n_168.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_12.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_13.n_163.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_13.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_14.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_14.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_15.n_100.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_15.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_16.n_98.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_16.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_17.n_96.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_17.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_18.n_85.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_18.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_19.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_1.n_1359.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_1.n_1359.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_20.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_20.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_21.n_69.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_21.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_22.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_22.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_23.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_23.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_24.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_24.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_25.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_25.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_26.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_26.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_2.n_1238.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_2.n_1238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_3.n_892.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_3.n_892.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_4.n_693.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_4.n_693.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_5.n_390.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_5.n_390.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_6.n_345.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_6.n_345.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_7.n_315.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_7.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_8.n_306.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_8.n_306.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_9.n_230.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-K562-ENCSR955LXM.bestfold.profile.pattern_9.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR345YWJ.bestfold.profile.pattern_0.n_2133.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR345YWJ.bestfold.profile.pattern_0.n_2133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR345YWJ.bestfold.profile.pattern_1.n_481.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR345YWJ.bestfold.profile.pattern_1.n_481.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_0.n_6564.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_0.n_6564.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_10.n_361.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_10.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_11.n_274.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_11.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_12.n_99.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_12.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_13.n_59.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_13.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_14.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_15.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_1.n_5609.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_1.n_5609.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_2.n_1540.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_2.n_1540.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_3.n_959.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_3.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_4.n_954.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_4.n_954.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_5.n_789.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_5.n_789.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_6.n_684.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_6.n_684.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_7.n_589.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_7.n_589.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_8.n_522.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_8.n_522.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_9.n_484.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-liver-ENCSR516HUP.bestfold.profile.pattern_9.n_484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_0.n_6344.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_0.n_6344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_10.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_10.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_11.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_11.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_1.n_892.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_1.n_892.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_2.n_429.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_2.n_429.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_3.n_244.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_3.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_4.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_4.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_5.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_5.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_6.n_120.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_6.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_7.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_7.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_8.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_9.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_9.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_0.n_4542.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_0.n_4542.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_1.n_1896.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_1.n_1896.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_2.n_367.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_2.n_367.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_3.n_203.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_3.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_4.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-SK-N-SH-ENCSR000BTS.bestfold.profile.pattern_6.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_0.n_856.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_0.n_856.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_10.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_11.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_11.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_1.n_535.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_1.n_535.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_2.n_301.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_2.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_3.n_285.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_3.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_4.n_199.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_4.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_5.n_162.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_5.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_6.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_6.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_7.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_7.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_8.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all/ZBTB33/ZBTB33-201-vs-ZBTB33-WTC11-ENCSR943MQH.bestfold.profile.pattern_9.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_0.n_2820.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_0.n_2820.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_1.n_580.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_1.n_580.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_2.n_332.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_2.n_332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_3.n_331.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_3.n_331.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_4.n_181.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_4.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_5.n_90.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_5.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_6.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_7.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF677/ZNF677-201-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_8.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK566-Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_0.n_400.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_0.n_400.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_10.n_131.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_10.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_11.n_119.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_11.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_12.n_108.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_12.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_13.n_104.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_13.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_14.n_84.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_14.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_15.n_61.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_15.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_16.n_51.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_16.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_17.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_1.n_389.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_1.n_389.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_2.n_344.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_2.n_344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_3.n_284.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_3.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_4.n_276.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_4.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_5.n_273.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_5.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_6.n_268.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_6.n_268.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_7.n_182.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_7.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_8.n_151.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_8.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_9.n_148.PWM.meme motif-alignments-all-vs-all/ZNF674/ZNF674-201-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_9.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_0.n_600.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_0.n_600.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_10.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_11.n_63.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_11.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_12.n_61.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_12.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_13.n_57.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_13.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_14.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_15.n_51.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_15.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_16.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_17.n_47.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_17.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_18.n_45.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_18.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_19.n_37.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_19.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_1.n_288.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_1.n_288.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_20.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_21.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_22.n_31.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_22.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_23.n_20.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_23.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_2.n_159.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_2.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_3.n_150.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_3.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_4.n_131.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_4.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_5.n_102.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_5.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_6.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_7.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_8.n_79.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_8.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF672-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF672/ZNF672-201-vs-ZNF672-HepG2-ENCSR263YXJ.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_0.n_176.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_0.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_10.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_11.n_64.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_11.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_12.n_58.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_12.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_13.n_58.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_13.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_15.n_54.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_15.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_16.n_51.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_16.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_17.n_49.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_17.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_18.n_43.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_18.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_19.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_1.n_169.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_1.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_20.n_24.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_20.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_2.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_3.n_144.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_3.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_4.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_5.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_6.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_7.n_86.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_7.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_8.n_72.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_8.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_9.n_68.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ZNF671-WTC11-ENCSR260GQA.bestfold.profile.pattern_9.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_0.n_212.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_0.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_1.n_66.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_1.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_2.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_3.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_5.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HEK293-ENCSR233MWH.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_0.n_5535.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_0.n_5535.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_10.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_1.n_1402.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_1.n_1402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_2.n_765.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_2.n_765.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_3.n_443.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_3.n_443.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_4.n_412.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_4.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_5.n_401.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_5.n_401.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_6.n_365.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_6.n_365.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_7.n_302.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_7.n_302.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_8.n_250.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_8.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_9.n_99.PWM.meme motif-alignments-all-vs-all/ZNF670/ZNF670-201-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_9.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_0.n_226.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_0.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_1.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_2.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-HEK293-ENCSR516VQK.bestfold.profile.pattern_6.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_0.n_289.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_0.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_1.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_2.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZNF174/ZNF174-201-vs-ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_0.n_138.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_0.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_1.n_36.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_1.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_2.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-HEK293-ENCSR103GAK.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_0.n_5220.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_0.n_5220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_10.n_262.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_10.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_11.n_225.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_11.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_12.n_185.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_12.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_13.n_171.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_13.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_14.n_162.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_14.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_15.n_150.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_15.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_16.n_147.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_16.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_17.n_140.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_17.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_18.n_101.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_18.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_19.n_93.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_19.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_1.n_1451.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_1.n_1451.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_20.n_78.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_20.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_21.n_75.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_21.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_22.n_69.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_22.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_23.n_67.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_23.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_24.n_65.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_24.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_25.n_60.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_25.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_26.n_53.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_26.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_27.n_48.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_27.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_28.n_42.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_28.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_29.n_33.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_29.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_2.n_1322.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_2.n_1322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_30.n_24.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_30.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_3.n_1243.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_3.n_1243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_4.n_791.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_4.n_791.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_5.n_630.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_5.n_630.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_6.n_594.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_6.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_7.n_498.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_7.n_498.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_8.n_385.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_8.n_385.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_9.n_344.PWM.meme motif-alignments-all-vs-all/ZNF175/ZNF175-201-vs-ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_9.n_344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_0.n_1075.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_2.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_3.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_5.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_6.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_7.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-A549-ENCSR636YLV.bestfold.profile.pattern_8.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_0.n_7269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_10.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_11.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_13.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_14.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_16.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_17.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_18.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_1.n_3998.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_2.n_2242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_3.n_1227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_4.n_614.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_5.n_612.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_6.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_7.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_8.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR000DZA.bestfold.profile.pattern_9.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_0.n_5897.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_1.n_3272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_2.n_1669.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_3.n_880.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_4.n_515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_5.n_474.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_6.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_7.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_8.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-GM12878-ENCSR903MVU.bestfold.profile.pattern_9.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_0.n_14887.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_1.n_2574.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_2.n_1565.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_3.n_1366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_4.n_1191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_5.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_6.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_7.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_8.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK293-ENCSR290SSQ.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_0.n_3997.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_1.n_3024.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_2.n_1525.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_3.n_805.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_4.n_672.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_5.n_588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_6.n_440.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_7.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HeLa-S3-ENCSR000ECL.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_0.n_6611.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_1.n_1764.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_2.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_3.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_4.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_5.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_6.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_7.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR000EDN.bestfold.profile.pattern_8.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_0.n_3213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_10.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_11.n_396.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_12.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_13.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_14.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_15.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_16.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_17.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_18.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_19.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_1.n_2566.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_20.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_21.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_2.n_1149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_3.n_947.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_4.n_904.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_5.n_873.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_6.n_824.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_7.n_624.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_8.n_507.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-HepG2-ENCSR700PNE.bestfold.profile.pattern_9.n_455.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_0.n_10643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_10.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_11.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_12.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_13.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_1.n_4355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_2.n_4151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_3.n_1246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_4.n_623.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_5.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_6.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_7.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_8.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-IMR-90-ENCSR000EFF.bestfold.profile.pattern_9.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_0.n_11531.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_10.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_11.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_12.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_13.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_14.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_15.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_1.n_6040.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_2.n_4123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_3.n_2080.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_4.n_813.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_5.n_659.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_6.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_7.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_8.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR000EFX.bestfold.profile.pattern_9.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_0.n_9313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_10.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_11.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_12.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_13.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_14.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_1.n_8349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_2.n_2063.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_3.n_1287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_4.n_1130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_5.n_614.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_6.n_475.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_7.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_8.n_353.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR163IUV.bestfold.profile.pattern_9.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_0.n_4919.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_10.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_11.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_12.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_13.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_14.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_16.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_1.n_2578.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_2.n_1524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_3.n_655.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_4.n_599.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_5.n_571.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_6.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_7.n_407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_8.n_363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-K562-ENCSR643JRH.bestfold.profile.pattern_9.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_0.n_5080.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_1.n_1568.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_2.n_884.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_4.n_453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_5.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_6.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_7.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-MAZ-MCF-7-ENCSR288IJC.bestfold.profile.pattern_8.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_0.n_2719.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_0.n_2719.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_10.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_11.n_72.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_11.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_12.n_60.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_12.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_13.n_53.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_13.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_16.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_17.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_1.n_394.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_1.n_394.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_2.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_3.n_225.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_3.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_4.n_200.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_4.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_5.n_155.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_5.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_6.n_132.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_6.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_7.n_129.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_7.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_8.n_102.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_8.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_9.n_93.PWM.meme motif-alignments-all-vs-all/ZNF678/ZNF678-201-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_9.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_0.n_679.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_0.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_1.n_189.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_1.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_2.n_181.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_2.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_3.n_77.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_3.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_4.n_66.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_4.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_6.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_6.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_7.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_0.n_346.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_0.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_1.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_2.n_114.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_2.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_3.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_4.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_5.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_6.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_7.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_0.n_679.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_0.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_1.n_189.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_1.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_2.n_181.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_2.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_3.n_77.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_3.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_4.n_66.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_4.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_6.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_6.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-HEK293-ENCSR721QZV.bestfold.profile.pattern_7.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_0.n_346.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_0.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_1.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_2.n_114.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_2.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_3.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_4.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_5.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_6.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN18/ZSCAN18-201-vs-ZSCAN18-WTC11-ENCSR499FDW.bestfold.profile.pattern_7.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HEK602-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_0.n_259.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_0.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_10.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_12.n_28.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_12.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_13.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_1.n_238.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_1.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_2.n_203.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_2.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_3.n_175.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_3.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_4.n_153.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_4.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_5.n_147.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_5.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_6.n_138.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_6.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_7.n_102.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_7.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_8.n_100.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_8.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_9.n_73.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-HepG2-ENCSR141ELR.bestfold.profile.pattern_9.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_0.n_39.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_0.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_1.n_37.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_1.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ZNF778-K562-ENCSR110JLQ.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_0.n_405.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_0.n_405.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_1.n_246.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_1.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_2.n_100.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_2.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_3.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_4.n_69.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_4.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_5.n_62.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_5.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_6.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_7.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK293-ENCSR274LVQ.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK599-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK599-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HEK599-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HEK599-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_0.n_2032.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_0.n_2032.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_10.n_156.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_10.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_11.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_12.n_129.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_12.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_13.n_89.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_13.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_14.n_71.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_14.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_15.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_1.n_1838.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_1.n_1838.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_2.n_1243.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_2.n_1243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_3.n_868.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_3.n_868.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_4.n_570.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_4.n_570.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_5.n_376.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_5.n_376.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_6.n_367.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_6.n_367.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_7.n_341.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_7.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_8.n_276.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_8.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_9.n_227.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ZNF776-HepG2-ENCSR704ENT.bestfold.profile.pattern_9.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_0.n_2034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_1.n_518.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_1.n_518.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_2.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_3.n_251.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_3.n_251.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_4.n_127.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_4.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_5.n_92.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_5.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_6.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_7.n_33.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_7.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_8.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HEK293-ENCSR295BIP.bestfold.profile.pattern_9.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_0.n_8064.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_0.n_8064.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_1.n_1667.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_1.n_1667.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_2.n_1138.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_2.n_1138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_3.n_441.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_3.n_441.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_4.n_399.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_4.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_5.n_333.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_5.n_333.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_6.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZNF777/ZNF777-201-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_7.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_0.n_1316.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_0.n_1316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_10.n_104.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_10.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_11.n_100.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_11.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_12.n_92.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_12.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_13.n_76.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_13.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_14.n_64.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_14.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_15.n_44.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_15.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_16.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_17.n_31.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_17.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_18.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_19.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_1.n_981.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_1.n_981.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_2.n_263.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_2.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_3.n_234.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_3.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_4.n_219.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_4.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_5.n_178.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_5.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_6.n_157.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_6.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_7.n_121.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_7.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_8.n_115.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_8.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF775-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/ZNF775/ZNF775-201-vs-ZNF775-HepG2-ENCSR856QJP.bestfold.profile.pattern_9.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_0.n_2424.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_0.n_2424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_10.n_396.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_10.n_396.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_11.n_396.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_11.n_396.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_12.n_388.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_12.n_388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_13.n_299.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_13.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_14.n_274.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_14.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_15.n_213.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_15.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_16.n_163.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_16.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_17.n_55.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_17.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_18.n_50.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_18.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_1.n_1840.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_1.n_1840.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_2.n_1421.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_2.n_1421.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_3.n_950.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_3.n_950.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_4.n_842.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_4.n_842.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_5.n_758.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_5.n_758.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_6.n_653.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_6.n_653.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_7.n_519.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_7.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_8.n_492.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_8.n_492.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF772-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_9.n_460.PWM.meme motif-alignments-all-vs-all/ZNF772/ZNF772-201-vs-ZNF772-HepG2-ENCSR248WAU.bestfold.profile.pattern_9.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_0.n_610.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_0.n_610.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_10.n_133.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_10.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_11.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_12.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_13.n_30.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_13.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_1.n_540.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_1.n_540.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_2.n_404.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_2.n_404.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_3.n_376.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_3.n_376.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_4.n_280.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_4.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_5.n_244.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_5.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_6.n_244.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_6.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_7.n_228.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_7.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_8.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF773-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_9.n_138.PWM.meme motif-alignments-all-vs-all/ZNF773/ZNF773-201-vs-ZNF773-HepG2-ENCSR029ARE.bestfold.profile.pattern_9.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-2/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_0.n_3417.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_0.n_3417.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_1.n_326.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_1.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_2.n_105.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_2.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_3.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_0.n_3417.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_0.n_3417.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_1.n_326.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_1.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_2.n_105.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_2.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK293-ENCSR864VJE.bestfold.profile.pattern_3.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-ZSCAN16-HEK630-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-HEK378-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_21.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-HEK378-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-HEK378-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_20.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-HEK378-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_0.n_3565.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_0.n_3565.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_10.n_160.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_10.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_11.n_131.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_11.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_12.n_126.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_12.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_13.n_110.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_13.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_14.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_15.n_52.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_15.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_16.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_17.n_38.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_17.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_18.n_36.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_18.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_19.n_20.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_19.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_1.n_1019.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_1.n_1019.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_2.n_832.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_2.n_832.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_3.n_709.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_3.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_4.n_693.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_4.n_693.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_5.n_413.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_5.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_6.n_393.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_6.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_7.n_380.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_7.n_380.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_8.n_298.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_8.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_9.n_235.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_9.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HEK517-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HEK517-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HEK517-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HEK517-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_0.n_1061.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_0.n_1061.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_1.n_749.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_1.n_749.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_2.n_371.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_2.n_371.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_3.n_221.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_3.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_4.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_5.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_6.n_103.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_6.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_7.n_75.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_7.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_8.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_9.n_31.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_9.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ZNF454-HEK482-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_0.n_28879.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_0.n_28879.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_10.n_47.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_10.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_11.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_1.n_842.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_1.n_842.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_2.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_3.n_236.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_3.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_4.n_205.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_4.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_5.n_202.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_5.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_6.n_136.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_6.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_7.n_130.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_7.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_8.n_76.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_8.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_9.n_59.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_9.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-ZIC2-HEK341-Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_0.n_645.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_0.n_645.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_10.n_98.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_10.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_11.n_95.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_11.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_12.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_13.n_49.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_13.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_14.n_48.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_14.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_15.n_41.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_15.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_1.n_376.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_1.n_376.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_2.n_213.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_2.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_3.n_191.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_3.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_4.n_140.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_4.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_5.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_6.n_134.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_6.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_7.n_132.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_7.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_8.n_118.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_8.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_9.n_115.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-HepG2-ENCSR264SRY.bestfold.profile.pattern_9.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_0.n_10251.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_0.n_10251.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_1.n_1716.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_1.n_1716.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_2.n_1610.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_2.n_1610.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_3.n_1223.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_3.n_1223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_0.n_1022.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_0.n_1022.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_10.n_81.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_10.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_11.n_63.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_11.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_12.n_52.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_12.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_13.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_1.n_274.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_1.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_2.n_255.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_2.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_3.n_181.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_3.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_4.n_176.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_4.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_5.n_153.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_5.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_6.n_143.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_6.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_7.n_134.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_7.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_8.n_93.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_8.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-K562-ENCSR696URR.bestfold.profile.pattern_9.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_0.n_528.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_0.n_528.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_10.n_68.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_10.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_11.n_62.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_11.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_1.n_517.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_1.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_2.n_364.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_2.n_364.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_3.n_209.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_3.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_4.n_187.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_4.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_5.n_154.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_5.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_6.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_7.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_8.n_111.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_8.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_9.n_80.PWM.meme motif-alignments-all-vs-all/ZNF512/ZNF512-201-vs-ZNF512-WTC11-ENCSR634WRC.bestfold.profile.pattern_9.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_1.n_699.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_1.n_699.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_2.n_245.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_2.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_3.n_223.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_3.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_4.n_199.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_4.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_5.n_164.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_5.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_6.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_7.n_88.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_7.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_8.n_85.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_8.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_0.n_363.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_0.n_363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_10.n_73.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_10.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_11.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_12.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_13.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_14.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_15.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_16.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_17.n_34.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_17.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_18.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_19.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_1.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_2.n_196.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_2.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_3.n_186.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_3.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_4.n_143.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_4.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_5.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_6.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_7.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_8.n_89.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_8.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-201-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_1.n_699.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_1.n_699.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_2.n_245.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_2.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_3.n_223.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_3.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_4.n_199.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_4.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_5.n_164.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_5.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_6.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_7.n_88.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_7.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_8.n_85.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_8.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_0.n_363.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_0.n_363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_10.n_73.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_10.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_11.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_12.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_13.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_14.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_15.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_16.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_17.n_34.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_17.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_18.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_19.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_1.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_2.n_196.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_2.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_3.n_186.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_3.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_4.n_143.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_4.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_5.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_6.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_7.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_8.n_89.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_8.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF513/ZNF513-202-vs-ZNF513-HepG2-ENCSR171KUL.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_0.n_2751.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_0.n_2751.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_1.n_858.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_1.n_858.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_2.n_166.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_2.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_3.n_151.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_3.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_4.n_92.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_4.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_5.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_0.n_1579.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_0.n_1579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_10.n_147.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_10.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_11.n_130.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_11.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_12.n_127.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_12.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_13.n_127.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_13.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_14.n_120.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_14.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_15.n_113.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_15.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_16.n_108.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_16.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_17.n_99.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_17.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_18.n_98.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_18.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_19.n_79.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_19.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_1.n_918.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_1.n_918.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_20.n_68.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_20.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_21.n_60.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_21.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_22.n_52.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_22.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_23.n_44.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_23.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_24.n_42.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_24.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_25.n_38.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_25.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_26.n_28.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_26.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_2.n_909.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_2.n_909.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_3.n_469.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_3.n_469.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_4.n_456.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_4.n_456.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_5.n_417.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_5.n_417.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_6.n_208.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_6.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_7.n_185.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_7.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_8.n_183.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_8.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_9.n_177.PWM.meme motif-alignments-all-vs-all/ZNF510/ZNF510-201-vs-ZNF510-HepG2-ENCSR695SLS.bestfold.profile.pattern_9.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_0.n_2451.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_0.n_2451.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_10.n_320.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_10.n_320.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_11.n_251.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_11.n_251.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_12.n_248.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_12.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_13.n_193.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_13.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_14.n_182.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_14.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_15.n_88.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_15.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_16.n_47.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_16.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_17.n_30.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_17.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_18.n_26.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_18.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_19.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_1.n_1874.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_1.n_1874.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_2.n_1099.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_2.n_1099.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_3.n_976.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_3.n_976.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_4.n_738.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_4.n_738.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_5.n_657.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_5.n_657.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_6.n_566.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_6.n_566.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_7.n_509.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_7.n_509.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_8.n_401.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_8.n_401.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_9.n_339.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_9.n_339.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_0.n_1286.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_0.n_1286.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_10.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_11.n_31.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_11.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_1.n_699.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_1.n_699.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_2.n_552.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_2.n_552.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_3.n_490.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_3.n_490.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_4.n_461.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_4.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_5.n_432.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_5.n_432.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_6.n_405.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_6.n_405.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_7.n_358.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_7.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_8.n_195.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_8.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_9.n_186.PWM.meme motif-alignments-all-vs-all/ZNF511/ZNF511-203-vs-ZNF511-K562-ENCSR652OGX.bestfold.profile.pattern_9.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF514-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_0.n_837.PWM.meme motif-alignments-all-vs-all/ZNF514/ZNF514-201-vs-ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_0.n_837.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF514-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_1.n_180.PWM.meme motif-alignments-all-vs-all/ZNF514/ZNF514-201-vs-ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_1.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF514-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_2.n_111.PWM.meme motif-alignments-all-vs-all/ZNF514/ZNF514-201-vs-ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_2.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_0.n_214.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_0.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_1.n_123.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_1.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_2.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_3.n_67.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_3.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_4.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HEK293-ENCSR194BBY.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_0.n_2066.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_0.n_2066.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_10.n_442.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_10.n_442.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_11.n_418.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_11.n_418.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_12.n_229.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_12.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_13.n_186.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_13.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_14.n_125.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_14.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_15.n_89.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_15.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_1.n_1493.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_1.n_1493.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_2.n_1091.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_2.n_1091.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_3.n_1046.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_3.n_1046.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_4.n_783.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_4.n_783.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_5.n_758.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_5.n_758.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_6.n_660.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_6.n_660.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_7.n_602.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_7.n_602.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_8.n_565.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_8.n_565.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF221-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_9.n_448.PWM.meme motif-alignments-all-vs-all/ZNF221/ZNF221-201-vs-ZNF221-HepG2-ENCSR347HAM.bestfold.profile.pattern_9.n_448.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_0.n_3162.PWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_0.n_3162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_1.n_418.PWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_1.n_418.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_2.n_409.PWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_2.n_409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_3.n_364.PWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_3.n_364.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_4.n_175.PWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_4.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_5.n_118.PWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_5.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_6.n_105.PWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_6.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_7.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF223/ZNF223-201-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_0.n_1582.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_0.n_1582.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_10.n_262.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_10.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_11.n_186.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_11.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_12.n_155.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_12.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_13.n_145.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_13.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_14.n_138.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_14.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_15.n_103.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_15.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_16.n_55.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_16.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_17.n_30.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_17.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_1.n_1372.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_1.n_1372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_2.n_531.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_2.n_531.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_3.n_381.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_3.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_4.n_317.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_4.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_5.n_296.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_5.n_296.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_6.n_285.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_6.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_7.n_278.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_7.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_8.n_276.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_8.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_9.n_269.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_9.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_0.n_443.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_0.n_443.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_10.n_69.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_10.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_12.n_57.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_12.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_13.n_26.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_13.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_14.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_1.n_112.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_1.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_2.n_110.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_2.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_3.n_105.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_3.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_4.n_97.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_4.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_5.n_89.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_5.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_6.n_86.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_6.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_7.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_8.n_75.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_8.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all/ZNF224/ZNF224-201-vs-ZNF224-K562-ENCSR409PXW.bestfold.profile.pattern_9.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_0.n_1612.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_0.n_1612.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_10.n_110.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_10.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_11.n_85.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_11.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_12.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_13.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_15.n_43.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_15.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_16.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_17.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_18.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_1.n_1329.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_1.n_1329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_2.n_1091.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_2.n_1091.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_3.n_1001.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_3.n_1001.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_4.n_953.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_4.n_953.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_5.n_277.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_5.n_277.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_6.n_199.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_6.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_7.n_199.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_7.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_8.n_197.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_8.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_9.n_141.PWM.meme motif-alignments-all-vs-all/ZNF225/ZNF225-201-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_9.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_0.n_306.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_0.n_306.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_10.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_1.n_161.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_1.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_2.n_124.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_2.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_3.n_117.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_3.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_4.n_84.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_4.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_5.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_6.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_7.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_8.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF227/ZNF227-201-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_9.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HEK454-ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_0.n_619.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_0.n_619.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_10.n_121.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_10.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_11.n_110.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_11.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_12.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_13.n_89.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_13.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_14.n_81.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_14.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_15.n_67.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_15.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_16.n_61.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_16.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_17.n_60.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_17.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_18.n_58.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_18.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_19.n_57.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_19.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_1.n_555.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_1.n_555.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_20.n_50.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_20.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_2.n_526.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_2.n_526.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_3.n_403.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_3.n_403.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_4.n_374.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_4.n_374.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_5.n_310.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_5.n_310.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_6.n_216.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_6.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_7.n_186.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_7.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_8.n_147.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_8.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_9.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_0.n_4500.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_0.n_4500.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_10.n_61.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_10.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_11.n_40.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_11.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_12.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_13.n_39.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_13.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_14.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_15.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_16.n_29.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_16.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_17.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_18.n_25.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_18.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_19.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_1.n_214.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_1.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_2.n_208.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_2.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_3.n_195.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_3.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_4.n_140.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_4.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_5.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_6.n_105.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_6.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_7.n_90.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_7.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_8.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_0.n_4907.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_0.n_4907.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_10.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_11.n_61.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_11.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_12.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_13.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_14.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_17.n_43.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_17.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_18.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_19.n_27.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_19.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_1.n_684.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_1.n_684.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_20.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_21.n_20.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_21.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_2.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_3.n_175.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_3.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_4.n_153.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_4.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_5.n_112.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_5.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_6.n_104.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_6.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_7.n_94.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_7.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_8.n_83.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_8.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_9.n_63.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_9.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_0.n_1775.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_0.n_1775.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_10.n_148.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_10.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_11.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_12.n_123.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_12.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_13.n_118.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_13.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_14.n_110.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_14.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_15.n_104.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_15.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_16.n_79.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_16.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_17.n_67.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_17.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_18.n_61.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_18.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_19.n_61.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_19.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_1.n_1370.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_1.n_1370.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_20.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_21.n_51.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_21.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_22.n_29.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_22.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_2.n_1304.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_2.n_1304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_3.n_837.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_3.n_837.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_4.n_257.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_4.n_257.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_5.n_239.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_5.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_6.n_226.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_6.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_7.n_216.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_7.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_8.n_199.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_8.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_9.n_180.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_9.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_0.n_4801.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_0.n_4801.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_10.n_191.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_10.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_11.n_174.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_11.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_12.n_162.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_12.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_13.n_105.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_13.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_14.n_96.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_14.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_15.n_84.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_15.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_16.n_83.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_16.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_17.n_82.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_17.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_18.n_69.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_18.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_19.n_34.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_19.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_1.n_2647.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_1.n_2647.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_20.n_28.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_20.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_21.n_23.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_21.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_22.n_23.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_22.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_23.n_21.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_23.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_2.n_980.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_2.n_980.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_3.n_888.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_3.n_888.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_4.n_736.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_4.n_736.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_5.n_568.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_5.n_568.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_6.n_478.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_6.n_478.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_7.n_454.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_7.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_8.n_275.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_8.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_9.n_239.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-201-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_9.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_0.n_4500.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_0.n_4500.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_10.n_61.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_10.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_11.n_40.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_11.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_12.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_13.n_39.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_13.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_14.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_15.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_16.n_29.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_16.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_17.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_18.n_25.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_18.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_19.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_1.n_214.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_1.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_2.n_208.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_2.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_3.n_195.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_3.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_4.n_140.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_4.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_5.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_6.n_105.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_6.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_7.n_90.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_7.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_8.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-bipolar_neuron-ENCSR418KUS.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_0.n_4907.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_0.n_4907.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_10.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_11.n_61.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_11.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_12.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_13.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_14.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_17.n_43.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_17.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_18.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_19.n_27.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_19.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_1.n_684.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_1.n_684.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_20.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_21.n_20.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_21.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_2.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_3.n_175.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_3.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_4.n_153.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_4.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_5.n_112.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_5.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_6.n_104.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_6.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_7.n_94.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_7.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_8.n_83.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_8.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_9.n_63.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-GM12878-ENCSR000BND.bestfold.profile.pattern_9.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_0.n_1775.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_0.n_1775.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_10.n_148.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_10.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_11.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_12.n_123.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_12.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_13.n_118.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_13.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_14.n_110.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_14.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_15.n_104.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_15.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_16.n_79.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_16.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_17.n_67.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_17.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_18.n_61.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_18.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_19.n_61.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_19.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_1.n_1370.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_1.n_1370.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_20.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_21.n_51.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_21.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_22.n_29.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_22.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_2.n_1304.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_2.n_1304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_3.n_837.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_3.n_837.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_4.n_257.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_4.n_257.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_5.n_239.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_5.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_6.n_226.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_6.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_7.n_216.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_7.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_8.n_199.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_8.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_9.n_180.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HEK293-ENCSR909HMT.bestfold.profile.pattern_9.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_0.n_4801.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_0.n_4801.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_10.n_191.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_10.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_11.n_174.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_11.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_12.n_162.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_12.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_13.n_105.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_13.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_14.n_96.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_14.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_15.n_84.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_15.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_16.n_83.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_16.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_17.n_82.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_17.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_18.n_69.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_18.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_19.n_34.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_19.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_1.n_2647.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_1.n_2647.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_20.n_28.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_20.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_21.n_23.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_21.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_22.n_23.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_22.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_23.n_21.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_23.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_2.n_980.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_2.n_980.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_3.n_888.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_3.n_888.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_4.n_736.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_4.n_736.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_5.n_568.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_5.n_568.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_6.n_478.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_6.n_478.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_7.n_454.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_7.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_8.n_275.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_8.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB1-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_9.n_239.PWM.meme motif-alignments-all-vs-all/ZEB1/ZEB1-206-vs-ZEB1-HepG2-ENCSR000BVN.bestfold.profile.pattern_9.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_0.n_5000.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_0.n_5000.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_10.n_226.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_10.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_11.n_218.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_11.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_12.n_187.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_12.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_13.n_172.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_13.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_14.n_142.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_14.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_15.n_135.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_15.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_16.n_109.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_16.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_17.n_105.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_17.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_18.n_86.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_18.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_19.n_62.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_19.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_1.n_4952.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_1.n_4952.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_20.n_57.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_20.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_21.n_56.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_21.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_22.n_51.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_22.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_23.n_44.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_23.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_24.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_25.n_29.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_25.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_26.n_26.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_26.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_27.n_21.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_27.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_2.n_3734.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_2.n_3734.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_3.n_1298.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_3.n_1298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_4.n_753.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_4.n_753.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_5.n_448.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_5.n_448.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_6.n_387.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_6.n_387.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_17.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_1.n_6662.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_1.n_6662.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_3.n_1610.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_3.n_1610.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_4.n_1078.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_4.n_1078.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_5.n_602.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_5.n_602.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_6.n_320.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_6.n_320.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_7.n_237.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_7.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_8.n_222.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_8.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_9.n_117.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_9.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_0.n_8689.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_0.n_8689.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_10.n_112.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_10.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_11.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_1.n_4532.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_1.n_4532.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_2.n_3305.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_2.n_3305.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_3.n_881.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_3.n_881.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_4.n_569.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_4.n_569.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_5.n_196.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_5.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_6.n_164.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_6.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_7.n_141.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_7.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_8.n_132.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_8.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_9.n_126.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-201-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_9.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_0.n_5000.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_0.n_5000.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_10.n_226.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_10.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_11.n_218.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_11.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_12.n_187.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_12.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_13.n_172.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_13.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_14.n_142.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_14.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_15.n_135.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_15.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_16.n_109.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_16.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_17.n_105.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_17.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_18.n_86.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_18.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_19.n_62.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_19.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_1.n_4952.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_1.n_4952.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_20.n_57.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_20.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_21.n_56.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_21.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_22.n_51.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_22.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_23.n_44.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_23.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_24.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_25.n_29.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_25.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_26.n_26.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_26.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_27.n_21.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_27.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_2.n_3734.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_2.n_3734.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_3.n_1298.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_3.n_1298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_4.n_753.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_4.n_753.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_5.n_448.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_5.n_448.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_6.n_387.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_6.n_387.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_17.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_1.n_6662.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_1.n_6662.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_3.n_1610.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_3.n_1610.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_4.n_1078.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_4.n_1078.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_5.n_602.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_5.n_602.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_6.n_320.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_6.n_320.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_7.n_237.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_7.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_8.n_222.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_8.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_9.n_117.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_9.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_0.n_8689.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_0.n_8689.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_10.n_112.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_10.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_11.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_1.n_4532.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_1.n_4532.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_2.n_3305.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_2.n_3305.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_3.n_881.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_3.n_881.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_4.n_569.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_4.n_569.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_5.n_196.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_5.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_6.n_164.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_6.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_7.n_141.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_7.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_8.n_132.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_8.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-246/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_9.n_126.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-246-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_9.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_0.n_5000.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_0.n_5000.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_10.n_226.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_10.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_11.n_218.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_11.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_12.n_187.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_12.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_13.n_172.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_13.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_14.n_142.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_14.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_15.n_135.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_15.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_16.n_109.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_16.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_17.n_105.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_17.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_18.n_86.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_18.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_19.n_62.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_19.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_1.n_4952.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_1.n_4952.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_20.n_57.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_20.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_21.n_56.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_21.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_22.n_51.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_22.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_23.n_44.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_23.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_24.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_25.n_29.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_25.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_26.n_26.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_26.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_27.n_21.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_27.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_2.n_3734.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_2.n_3734.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_3.n_1298.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_3.n_1298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_4.n_753.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_4.n_753.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_5.n_448.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_5.n_448.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_6.n_387.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_6.n_387.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_7.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_8.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-HEK293-ENCSR417VWF.bestfold.profile.pattern_9.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_0.n_10952.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_10.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_11.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_12.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_13.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_14.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_15.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_16.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_17.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_18.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_1.n_6662.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_1.n_6662.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_2.n_3321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_3.n_1610.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_3.n_1610.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_4.n_1078.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_4.n_1078.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_5.n_602.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_5.n_602.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_6.n_320.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_6.n_320.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_7.n_237.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_7.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_8.n_222.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_8.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_9.n_117.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR004GKA.bestfold.profile.pattern_9.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_0.n_8689.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_0.n_8689.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_10.n_112.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_10.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_11.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_1.n_4532.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_1.n_4532.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_2.n_3305.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_2.n_3305.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_3.n_881.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_3.n_881.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_4.n_569.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_4.n_569.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_5.n_196.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_5.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_6.n_164.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_6.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_7.n_141.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_7.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_8.n_132.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_8.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZEB2-248/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_9.n_126.PWM.meme motif-alignments-all-vs-all/ZEB2/ZEB2-248-vs-ZEB2-K562-ENCSR322CFO.bestfold.profile.pattern_9.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_0.n_1360.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_0.n_1360.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_10.n_241.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_10.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_11.n_241.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_11.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_12.n_235.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_12.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_13.n_199.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_13.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_14.n_181.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_14.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_15.n_134.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_15.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_16.n_95.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_16.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_17.n_60.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_17.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_18.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_19.n_33.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_19.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_1.n_1277.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_1.n_1277.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_2.n_911.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_2.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_3.n_610.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_3.n_610.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_4.n_334.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_4.n_334.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_5.n_312.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_5.n_312.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_6.n_281.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_6.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_7.n_278.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_7.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_8.n_257.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_8.n_257.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_9.n_244.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-HepG2-ENCSR734CRN.bestfold.profile.pattern_9.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_0.n_204.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_0.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_10.n_44.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_10.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_11.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_13.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_1.n_126.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_1.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_2.n_114.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_2.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_3.n_101.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_3.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_4.n_93.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_4.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_5.n_92.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_5.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_6.n_70.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_6.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_7.n_60.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_7.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_8.n_59.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_8.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_9.n_45.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR143CEO.bestfold.profile.pattern_9.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_0.n_1624.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_0.n_1624.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_10.n_147.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_10.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_11.n_115.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_11.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_12.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_13.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_1.n_755.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_1.n_755.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_2.n_621.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_2.n_621.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_3.n_459.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_3.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_4.n_443.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_4.n_443.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_5.n_325.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_5.n_325.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_6.n_277.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_6.n_277.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_7.n_248.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_7.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_8.n_225.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_8.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZC3H8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_9.n_189.PWM.meme motif-alignments-all-vs-all/ZC3H8/ZC3H8-201-vs-ZC3H8-K562-ENCSR494PWZ.bestfold.profile.pattern_9.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF426-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_0.n_10016.PWM.meme motif-alignments-all-vs-all/ZNF426/ZNF426-201-vs-ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_0.n_10016.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF426-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_1.n_45.PWM.meme motif-alignments-all-vs-all/ZNF426/ZNF426-201-vs-ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_1.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-HEK464-ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_0.n_291.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_0.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_1.n_240.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_1.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_2.n_185.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_2.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_3.n_161.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_3.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_4.n_103.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_4.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_5.n_72.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_5.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_6.n_65.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_6.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_7.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_0.n_661.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_0.n_661.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_1.n_626.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_1.n_626.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_2.n_137.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_2.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_3.n_120.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_3.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_4.n_112.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_4.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_5.n_89.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_5.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_6.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_7.n_63.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_7.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_8.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK293-ENCSR854ORP.bestfold.profile.pattern_9.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HEK446-Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_0.n_3800.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_0.n_3800.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_10.n_196.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_10.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_11.n_181.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_11.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_12.n_169.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_12.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_13.n_103.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_13.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_14.n_103.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_14.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_15.n_101.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_15.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_16.n_86.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_16.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_17.n_86.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_17.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_18.n_83.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_18.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_19.n_68.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_19.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_1.n_3129.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_1.n_3129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_20.n_67.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_20.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_21.n_63.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_21.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_22.n_47.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_22.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_23.n_34.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_23.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_24.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_2.n_1996.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_2.n_1996.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_3.n_1401.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_3.n_1401.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_4.n_672.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_4.n_672.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_5.n_550.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_5.n_550.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_6.n_508.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_6.n_508.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_7.n_410.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_7.n_410.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_8.n_320.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_8.n_320.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_9.n_222.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_9.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_0.n_5773.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_0.n_5773.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_10.n_167.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_10.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_11.n_167.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_11.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_12.n_98.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_12.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_13.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_15.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_1.n_2418.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_1.n_2418.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_2.n_2364.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_2.n_2364.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_3.n_2033.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_3.n_2033.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_4.n_1366.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_4.n_1366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_5.n_508.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_5.n_508.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_6.n_348.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_6.n_348.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_7.n_328.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_7.n_328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_8.n_256.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_8.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_9.n_212.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-A549-ENCSR977FEF.bestfold.profile.pattern_9.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_0.n_16528.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_0.n_16528.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_10.n_399.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_10.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_11.n_346.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_11.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_12.n_344.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_12.n_344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_13.n_311.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_13.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_14.n_301.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_14.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_15.n_276.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_15.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_16.n_236.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_16.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_17.n_234.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_17.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_18.n_217.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_18.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_19.n_208.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_19.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_1.n_1242.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_1.n_1242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_20.n_191.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_20.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_21.n_129.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_21.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_22.n_122.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_22.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_23.n_111.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_23.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_24.n_73.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_24.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_25.n_49.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_25.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_26.n_40.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_26.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_27.n_29.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_27.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_2.n_1135.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_2.n_1135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_3.n_905.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_3.n_905.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_4.n_723.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_4.n_723.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_5.n_631.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_5.n_631.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_6.n_626.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_6.n_626.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_7.n_484.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_7.n_484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_8.n_466.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_8.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_9.n_443.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK293-ENCSR098YLE.bestfold.profile.pattern_9.n_443.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_135.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_133.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_131.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_123.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_123.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_15.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_16.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_17.n_82.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_17.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_18.n_68.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_18.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_19.n_63.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_19.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_279.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_279.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_242.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_212.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_173.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_164.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_161.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_0.n_3545.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_0.n_3545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_1.n_1614.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_1.n_1614.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_2.n_1247.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-PRDM1-HeLa-S3-ENCSR000ECY.bestfold.profile.pattern_2.n_1247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_0.n_1526.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_0.n_1526.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_10.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_11.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_12.n_40.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_12.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_13.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_1.n_327.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_1.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_2.n_226.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_2.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_3.n_219.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_3.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_4.n_209.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_4.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_5.n_203.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_5.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_6.n_183.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_6.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_7.n_150.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_7.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_8.n_92.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_8.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF296-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_9.n_67.PWM.meme motif-alignments-all-vs-all/ZNF296/ZNF296-201-vs-ZNF296-HepG2-ENCSR862LJQ.bestfold.profile.pattern_9.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_0.n_1880.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_0.n_1880.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_1.n_87.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_1.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_2.n_60.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_2.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HEK293-ENCSR228PGT.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_0.n_5278.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_0.n_5278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_10.n_227.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_10.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_11.n_227.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_11.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_12.n_217.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_12.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_13.n_185.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_13.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_14.n_167.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_14.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_15.n_160.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_15.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_16.n_143.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_16.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_17.n_107.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_17.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_18.n_91.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_18.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_19.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_1.n_4551.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_1.n_4551.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_20.n_54.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_20.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_21.n_53.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_21.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_22.n_53.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_22.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_23.n_43.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_23.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_24.n_38.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_24.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_25.n_26.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_25.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_26.n_23.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_26.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_2.n_1671.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_2.n_1671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_3.n_1357.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_3.n_1357.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_4.n_856.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_4.n_856.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_5.n_397.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_5.n_397.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_6.n_303.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_6.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_7.n_285.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_7.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_8.n_269.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_8.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_9.n_239.PWM.meme motif-alignments-all-vs-all/ZNF292/ZNF292-201-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_9.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_0.n_351.PWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_0.n_351.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_1.n_80.PWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_1.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_2.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_3.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF837-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all/ZNF837/ZNF837-201-vs-ZNF837-HEK293-ENCSR711UOA.bestfold.profile.pattern_4.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_0.n_1041.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_0.n_1041.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_10.n_107.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_10.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_11.n_96.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_11.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_12.n_86.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_12.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_13.n_76.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_13.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_14.n_65.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_14.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_15.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_16.n_59.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_16.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_17.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_18.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_19.n_34.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_19.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_1.n_616.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_1.n_616.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_20.n_24.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_20.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_2.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_3.n_318.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_3.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_4.n_307.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_4.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_5.n_288.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_5.n_288.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_6.n_281.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_6.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_7.n_228.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_7.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_8.n_174.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_8.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF839-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_9.n_119.PWM.meme motif-alignments-all-vs-all/ZNF839/ZNF839-202-vs-ZNF839-HepG2-ENCSR540LPD.bestfold.profile.pattern_9.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_0.n_658.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_0.n_658.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_10.n_56.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_10.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_11.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_12.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_13.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_14.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_15.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_16.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_1.n_145.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_1.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_2.n_130.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_2.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_3.n_123.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_3.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_4.n_115.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_4.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_5.n_100.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_5.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_6.n_95.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_6.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_7.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_8.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_8.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_0.n_3057.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_0.n_3057.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_10.n_134.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_10.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_11.n_108.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_11.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_12.n_55.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_12.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_13.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_13.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_14.n_36.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_14.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_15.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_16.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_1.n_1702.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_1.n_1702.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_2.n_523.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_2.n_523.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_3.n_499.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_3.n_499.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_4.n_432.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_4.n_432.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_5.n_385.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_5.n_385.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_6.n_363.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_6.n_363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_7.n_355.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_7.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_8.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_9.n_163.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_9.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_0.n_658.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_0.n_658.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_10.n_56.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_10.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_11.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_12.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_13.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_14.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_15.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_16.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_1.n_145.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_1.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_2.n_130.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_2.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_3.n_123.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_3.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_4.n_115.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_4.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_5.n_100.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_5.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_6.n_95.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_6.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_7.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_8.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_8.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HEK293-ENCSR357QJR.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_0.n_3057.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_0.n_3057.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_10.n_134.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_10.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_11.n_108.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_11.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_12.n_55.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_12.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_13.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_13.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_14.n_36.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_14.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_15.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_16.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_1.n_1702.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_1.n_1702.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_2.n_523.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_2.n_523.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_3.n_499.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_3.n_499.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_4.n_432.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_4.n_432.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_5.n_385.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_5.n_385.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_6.n_363.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_6.n_363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_7.n_355.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_7.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_8.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_9.n_163.PWM.meme motif-alignments-all-vs-all/ZSCAN5A/ZSCAN5A-201-vs-ZSCAN5A-HepG2-ENCSR216GKQ.bestfold.profile.pattern_9.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_0.n_5721.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_0.n_5721.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_10.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_11.n_61.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_11.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_12.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_13.n_51.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_13.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_14.n_29.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_14.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_15.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_1.n_2567.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_1.n_2567.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_2.n_1600.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_2.n_1600.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_3.n_1092.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_3.n_1092.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_4.n_846.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_4.n_846.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_5.n_461.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_5.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_6.n_397.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_6.n_397.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_7.n_256.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_7.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_8.n_221.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_8.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_9.n_101.PWM.meme motif-alignments-all-vs-all/ZFP69B/ZFP69B-201-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_9.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_0.n_9595.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_0.n_9595.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_10.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_10.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_11.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_12.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_1.n_1672.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_1.n_1672.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_2.n_1165.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_2.n_1165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_3.n_632.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_3.n_632.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_4.n_506.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_4.n_506.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_5.n_346.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_5.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_6.n_333.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_6.n_333.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_7.n_304.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_7.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_8.n_200.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_8.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_9.n_162.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_9.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_0.n_9595.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_0.n_9595.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_10.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_10.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_11.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_12.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_1.n_1672.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_1.n_1672.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_2.n_1165.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_2.n_1165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_3.n_632.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_3.n_632.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_4.n_506.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_4.n_506.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_5.n_346.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_5.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_6.n_333.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_6.n_333.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_7.n_304.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_7.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_8.n_200.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_8.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_9.n_162.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK293-ENCSR731AGO.bestfold.profile.pattern_9.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-ZSCAN5C-HEK635-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_0.n_1097.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_0.n_1097.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_10.n_88.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_10.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_11.n_54.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_11.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_12.n_38.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_12.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_1.n_521.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_1.n_521.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_2.n_402.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_2.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_3.n_286.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_3.n_286.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_4.n_261.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_4.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_5.n_260.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_5.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_6.n_248.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_6.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_7.n_232.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_7.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_8.n_182.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_8.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_9.n_168.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_9.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_10.n_201.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_10.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_11.n_169.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_11.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_12.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_13.n_119.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_13.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_14.n_98.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_14.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_15.n_96.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_15.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_16.n_68.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_16.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_17.n_61.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_17.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_18.n_46.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_18.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_1.n_788.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_1.n_788.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_20.n_41.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_20.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_21.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_22.n_25.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_22.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_23.n_24.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_23.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_24.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_25.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_2.n_750.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_2.n_750.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_3.n_746.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_3.n_746.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_4.n_677.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_4.n_677.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_5.n_578.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_5.n_578.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_6.n_512.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_6.n_512.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_7.n_335.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_7.n_335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_8.n_293.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_8.n_293.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_9.n_283.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_9.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_0.n_1097.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_0.n_1097.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_10.n_88.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_10.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_11.n_54.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_11.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_12.n_38.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_12.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_1.n_521.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_1.n_521.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_2.n_402.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_2.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_3.n_286.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_3.n_286.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_4.n_261.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_4.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_5.n_260.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_5.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_6.n_248.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_6.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_7.n_232.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_7.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_8.n_182.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_8.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_9.n_168.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-HepG2-ENCSR263XFO.bestfold.profile.pattern_9.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_10.n_201.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_10.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_11.n_169.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_11.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_12.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_13.n_119.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_13.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_14.n_98.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_14.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_15.n_96.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_15.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_16.n_68.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_16.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_17.n_61.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_17.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_18.n_46.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_18.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_1.n_788.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_1.n_788.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_20.n_41.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_20.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_21.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_22.n_25.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_22.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_23.n_24.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_23.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_24.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_25.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_2.n_750.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_2.n_750.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_3.n_746.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_3.n_746.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_4.n_677.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_4.n_677.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_5.n_578.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_5.n_578.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_6.n_512.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_6.n_512.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_7.n_335.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_7.n_335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_8.n_293.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_8.n_293.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_9.n_283.PWM.meme motif-alignments-all-vs-all/ZNF83/ZNF83-201-vs-ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_9.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ZNF81-HEK619-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-ZNF85-HEK626-Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_0.n_724.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_0.n_724.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_10.n_78.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_10.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_11.n_66.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_11.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_12.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_13.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_14.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_1.n_132.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_1.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_2.n_116.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_2.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_3.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_4.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_5.n_98.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_5.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_8.n_83.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_8.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_9.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-HEK623-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_0.n_724.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_0.n_724.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_10.n_78.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_10.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_11.n_66.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_11.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_12.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_13.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_14.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_1.n_132.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_1.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_2.n_116.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_2.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_3.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_4.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_5.n_98.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_5.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_8.n_83.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_8.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ZNF84-K562-ENCSR376UMR.bestfold.profile.pattern_9.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_0.n_2712.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_0.n_2712.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_10.n_203.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_10.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_11.n_150.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_11.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_12.n_123.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_12.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_13.n_114.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_13.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_14.n_81.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_14.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_15.n_66.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_15.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_16.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_17.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_18.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_1.n_2308.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_1.n_2308.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_2.n_871.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_2.n_871.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_3.n_718.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_3.n_718.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_4.n_447.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_4.n_447.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_5.n_410.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_5.n_410.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_6.n_259.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_6.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_7.n_239.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_7.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_8.n_238.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_8.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_9.n_223.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HEK293-ENCSR080CST.bestfold.profile.pattern_9.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_0.n_2320.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_0.n_2320.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_10.n_185.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_10.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_11.n_176.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_11.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_12.n_173.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_12.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_13.n_156.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_13.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_14.n_119.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_14.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_15.n_110.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_15.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_16.n_108.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_16.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_17.n_37.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_17.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_1.n_773.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_1.n_773.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_2.n_455.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_2.n_455.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_3.n_444.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_3.n_444.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_4.n_352.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_4.n_352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_5.n_340.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_5.n_340.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_6.n_330.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_6.n_330.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_7.n_308.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_7.n_308.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_8.n_279.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_8.n_279.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_9.n_203.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-HepG2-ENCSR665UFC.bestfold.profile.pattern_9.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_0.n_224.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_0.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_1.n_105.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_1.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_2.n_75.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_2.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_3.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_4.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_7.n_30.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_7.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_8.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR258PSN.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_0.n_615.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_0.n_615.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_10.n_163.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_10.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_11.n_149.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_11.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_12.n_129.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_12.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_13.n_100.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_13.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_14.n_96.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_14.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_15.n_90.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_15.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_16.n_85.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_16.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_17.n_82.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_17.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_18.n_40.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_18.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_19.n_36.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_19.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_1.n_576.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_1.n_576.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_20.n_28.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_20.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_2.n_571.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_2.n_571.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_3.n_446.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_3.n_446.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_4.n_410.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_4.n_410.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_5.n_259.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_5.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_6.n_242.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_6.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_7.n_221.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_7.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_8.n_205.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_8.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_9.n_166.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR497VFH.bestfold.profile.pattern_9.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_0.n_4734.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_0.n_4734.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_10.n_291.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_10.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_11.n_276.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_11.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_12.n_274.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_12.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_13.n_213.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_13.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_14.n_113.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_14.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_15.n_94.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_15.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_16.n_73.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_16.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_17.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_18.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_19.n_23.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_19.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_1.n_3757.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_1.n_3757.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_20.n_22.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_20.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_2.n_1833.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_2.n_1833.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_3.n_1534.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_3.n_1534.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_4.n_1131.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_4.n_1131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_5.n_744.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_5.n_744.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_6.n_549.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_6.n_549.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_7.n_534.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_7.n_534.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_8.n_368.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_8.n_368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_9.n_294.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_9.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_0.n_5255.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_0.n_5255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_10.n_132.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_10.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_11.n_86.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_11.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_12.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_13.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_1.n_3333.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_1.n_3333.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_2.n_1266.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_2.n_1266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_3.n_506.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_3.n_506.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_4.n_473.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_4.n_473.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_5.n_279.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_5.n_279.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_6.n_265.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_6.n_265.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_7.n_230.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_7.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_8.n_179.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_8.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_9.n_150.PWM.meme motif-alignments-all-vs-all/ZNF639/ZNF639-201-vs-ZNF639-K562-ENCSR949NVY.bestfold.profile.pattern_9.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_0.n_490.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_0.n_490.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_10.n_95.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_10.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_11.n_92.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_11.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_12.n_88.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_12.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_13.n_84.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_13.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_14.n_83.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_14.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_15.n_82.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_15.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_16.n_80.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_16.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_17.n_79.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_17.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_18.n_72.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_18.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_19.n_63.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_19.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_1.n_298.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_1.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_20.n_36.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_20.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_21.n_24.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_21.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_22.n_23.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_22.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_23.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_2.n_208.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_2.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_3.n_203.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_3.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_4.n_202.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_4.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_5.n_144.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_5.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_6.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_7.n_123.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_7.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_8.n_99.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_8.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_9.n_95.PWM.meme motif-alignments-all-vs-all/ZNF737/ZNF737-201-vs-ZNF737-HepG2-ENCSR127IHN.bestfold.profile.pattern_9.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_0.n_2205.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_0.n_2205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_10.n_261.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_10.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_11.n_247.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_11.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_12.n_234.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_12.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_13.n_232.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_13.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_14.n_141.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_14.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_15.n_70.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_15.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_16.n_61.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_16.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_17.n_59.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_17.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_18.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_1.n_1477.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_1.n_1477.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_2.n_1127.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_2.n_1127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_3.n_793.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_3.n_793.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_4.n_674.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_4.n_674.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_5.n_412.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_5.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_6.n_394.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_6.n_394.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_7.n_370.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_7.n_370.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_8.n_335.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_8.n_335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF883-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_9.n_280.PWM.meme motif-alignments-all-vs-all/ZNF883/ZNF883-205-vs-ZNF883-HepG2-ENCSR882YYL.bestfold.profile.pattern_9.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_0.n_30.PWM.meme motif-alignments-all-vs-all/ZNF496/ZNF496-201-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_0.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all/ZNF496/ZNF496-201-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_1.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZNF496/ZNF496-201-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_2.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF496/ZNF496-201-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_0.n_9864.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_0.n_9864.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_10.n_107.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_10.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_11.n_93.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_11.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_12.n_85.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_12.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_13.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_14.n_49.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_14.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_15.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_1.n_1874.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_1.n_1874.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_2.n_587.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_2.n_587.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_3.n_581.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_3.n_581.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_4.n_337.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_4.n_337.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_5.n_314.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_5.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_7.n_188.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_7.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_8.n_184.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_8.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_9.n_113.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_9.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HEK370-Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_0.n_2066.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_0.n_2066.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_10.n_136.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_10.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_11.n_110.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_11.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_12.n_103.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_12.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_13.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_14.n_61.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_14.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_15.n_43.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_15.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_17.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_1.n_1474.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_1.n_1474.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_2.n_1456.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_2.n_1456.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_3.n_484.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_3.n_484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_4.n_377.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_4.n_377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_5.n_356.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_5.n_356.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_6.n_348.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_6.n_348.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_7.n_269.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_7.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_8.n_231.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_8.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_9.n_178.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-ZNF18-HepG2-ENCSR553ZJQ.bestfold.profile.pattern_9.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_0.n_679.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_0.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_1.n_629.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_1.n_629.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_2.n_182.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_2.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_3.n_149.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_3.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_4.n_112.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_4.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_5.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_44.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ZNF19-HEK377-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_13.n_313.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_13.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_15.n_283.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_15.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_1.n_554.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_1.n_554.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_20.n_220.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_20.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_21.n_219.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_21.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_22.n_205.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_22.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_23.n_179.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_23.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_24.n_167.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_24.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_25.n_166.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_25.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_3.n_468.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_3.n_468.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_40.n_49.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_40.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_44.n_26.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_44.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_45.n_25.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_45.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_4.n_457.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_4.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_5.n_433.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_5.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_6.n_417.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_6.n_417.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_7.n_409.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_7.n_409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_8.n_361.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_8.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_9.n_355.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HEK494-Hughes_GR_models_ZNF490.bestfold.profile.pattern_9.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_0.n_1566.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_0.n_1566.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_1.n_127.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_1.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_2.n_85.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_2.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_3.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_4.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_5.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_6.n_48.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_6.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_7.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_8.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_0.n_984.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_0.n_984.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_10.n_115.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_10.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_11.n_112.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_11.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_12.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_13.n_65.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_13.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_14.n_61.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_14.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_15.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_16.n_41.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_16.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_17.n_36.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_17.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_18.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_19.n_34.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_19.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_1.n_817.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_1.n_817.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_20.n_34.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_20.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_21.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_22.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_2.n_431.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_2.n_431.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_3.n_275.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_3.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_4.n_268.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_4.n_268.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_5.n_257.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_5.n_257.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_6.n_233.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_6.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_7.n_233.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_7.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_8.n_181.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_8.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_9.n_176.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_9.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_0.n_275.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_0.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_10.n_34.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_10.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_11.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_12.n_33.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_12.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_1.n_126.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_1.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_2.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_3.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_5.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_6.n_56.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_6.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_7.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_8.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_9.n_35.PWM.meme motif-alignments-all-vs-all/ZNF780A/ZNF780A-201-vs-ZNF780A-K562-ENCSR214PDW.bestfold.profile.pattern_9.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_0.n_1393.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_0.n_1393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_1.n_188.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_1.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_2.n_72.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_2.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_3.n_68.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_3.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_4.n_41.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_4.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_5.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_6.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HEK368-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_0.n_279.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_0.n_279.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_10.n_66.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_10.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_11.n_49.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_11.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_12.n_49.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_12.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_13.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_14.n_29.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_14.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_15.n_27.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_15.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_16.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_17.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_18.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_1.n_248.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_1.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_2.n_198.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_2.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_3.n_140.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_3.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_4.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_5.n_86.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_5.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_6.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_7.n_76.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_7.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_8.n_74.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_8.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_9.n_71.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_9.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_0.n_9700.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_0.n_9700.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_1.n_1636.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_1.n_1636.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_2.n_1403.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_2.n_1403.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_3.n_1007.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_3.n_1007.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_4.n_466.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_4.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_5.n_132.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_5.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_6.n_67.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_6.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_8.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_0.n_123.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_0.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_1.n_116.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_1.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_2.n_97.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_2.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_3.n_90.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_3.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_6.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-202-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_0.n_9700.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_0.n_9700.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_1.n_1636.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_1.n_1636.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_2.n_1403.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_2.n_1403.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_3.n_1007.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_3.n_1007.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_4.n_466.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_4.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_5.n_132.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_5.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_6.n_67.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_6.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HEK293-ENCSR019WUS.bestfold.profile.pattern_8.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_0.n_123.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_0.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_1.n_116.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_1.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_2.n_97.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_2.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_3.n_90.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_3.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_6.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/ZNF10/ZNF10-201-vs-ZNF10-HepG2-ENCSR009LIA.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_0.n_4249.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_0.n_4249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_10.n_379.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_10.n_379.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_11.n_360.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_11.n_360.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_12.n_301.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_12.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_13.n_234.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_13.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_14.n_201.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_14.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_15.n_146.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_15.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_16.n_125.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_16.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_17.n_71.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_17.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_18.n_49.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_18.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_19.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_1.n_3027.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_1.n_3027.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_20.n_24.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_20.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_21.n_23.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_21.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_2.n_2126.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_2.n_2126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_3.n_1972.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_3.n_1972.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_4.n_1915.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_4.n_1915.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_5.n_1046.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_5.n_1046.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_6.n_756.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_6.n_756.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_7.n_551.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_7.n_551.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_8.n_419.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_8.n_419.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_9.n_411.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-HepG2-ENCSR711KBM.bestfold.profile.pattern_9.n_411.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_0.n_1721.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_0.n_1721.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_11.n_40.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_11.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_1.n_840.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_1.n_840.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_2.n_228.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_2.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_3.n_159.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_3.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_4.n_153.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_4.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_5.n_111.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_5.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_6.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_8.n_58.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_8.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_9.n_48.PWM.meme motif-alignments-all-vs-all/ZNF12/ZNF12-201-vs-ZNF12-K562-ENCSR041YBR.bestfold.profile.pattern_9.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_10.n_338.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_10.n_338.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_11.n_272.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_11.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_12.n_228.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_12.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_13.n_225.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_13.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_14.n_219.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_14.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_15.n_209.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_15.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_16.n_203.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_16.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_17.n_182.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_17.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_18.n_124.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_18.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_19.n_66.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_19.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_1.n_2211.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_1.n_2211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_2.n_1051.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_2.n_1051.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_3.n_893.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_3.n_893.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_4.n_753.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_4.n_753.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_5.n_518.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_5.n_518.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_6.n_418.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_6.n_418.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_7.n_369.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_7.n_369.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_8.n_355.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_8.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_9.n_355.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_9.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_0.n_139.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_0.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_10.n_40.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_10.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_11.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_12.n_37.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_12.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_13.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_14.n_28.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_14.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_15.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_15.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_1.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_2.n_100.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_2.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_3.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_4.n_90.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_4.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_5.n_90.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_5.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_6.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_7.n_70.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_7.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_8.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_9.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HEK355-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_10.n_338.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_10.n_338.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_11.n_272.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_11.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_12.n_228.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_12.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_13.n_225.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_13.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_14.n_219.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_14.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_15.n_209.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_15.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_16.n_203.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_16.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_17.n_182.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_17.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_18.n_124.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_18.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_19.n_66.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_19.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_1.n_2211.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_1.n_2211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_2.n_1051.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_2.n_1051.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_3.n_893.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_3.n_893.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_4.n_753.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_4.n_753.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_5.n_518.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_5.n_518.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_6.n_418.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_6.n_418.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_7.n_369.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_7.n_369.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_8.n_355.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_8.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_9.n_355.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_9.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_0.n_139.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_0.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_10.n_40.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_10.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_11.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_12.n_37.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_12.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_13.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_14.n_28.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_14.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_15.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_15.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_1.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_2.n_100.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_2.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_3.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_4.n_90.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_4.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_5.n_90.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_5.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_6.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_7.n_70.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_7.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_8.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ZNF124-K562-ENCSR124YFA.bestfold.profile.pattern_9.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_0.n_22088.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_0.n_22088.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_1.n_434.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_1.n_434.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_2.n_393.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_2.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_3.n_336.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_3.n_336.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_4.n_225.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_4.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_5.n_123.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_5.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_6.n_76.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_6.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_7.n_60.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK293-ENCSR224QDY.bestfold.profile.pattern_7.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_0.n_1978.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_0.n_1978.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_10.n_252.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_10.n_252.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_11.n_230.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_11.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_12.n_219.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_12.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_13.n_191.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_13.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_14.n_185.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_14.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_15.n_183.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_15.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_16.n_182.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_16.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_17.n_175.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_17.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_18.n_169.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_18.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_19.n_160.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_19.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_1.n_1511.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_1.n_1511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_20.n_156.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_20.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_21.n_153.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_21.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_22.n_152.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_22.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_23.n_151.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_23.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_24.n_151.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_24.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_25.n_143.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_25.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_26.n_137.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_26.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_27.n_136.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_27.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_28.n_135.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_28.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_29.n_131.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_29.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_2.n_1410.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_2.n_1410.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_30.n_131.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_30.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_31.n_130.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_31.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_32.n_128.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_32.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_33.n_128.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_33.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_34.n_127.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_34.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_35.n_127.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_35.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_36.n_126.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_36.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_37.n_125.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_37.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_38.n_116.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_38.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_39.n_113.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_39.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_3.n_1207.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_3.n_1207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_40.n_111.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_40.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_41.n_110.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_41.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_42.n_110.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_42.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_43.n_109.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_43.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_44.n_109.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_44.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_45.n_106.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_45.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_46.n_106.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_46.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_47.n_106.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_47.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_48.n_105.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_48.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_49.n_105.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_49.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_4.n_1150.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_4.n_1150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_50.n_105.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_50.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_51.n_102.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_51.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_52.n_100.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_52.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_53.n_98.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_53.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_54.n_95.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_54.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_55.n_95.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_55.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_56.n_86.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_56.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_57.n_84.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_57.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_58.n_81.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_58.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_59.n_79.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_59.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_5.n_1108.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_5.n_1108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_60.n_77.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_60.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_61.n_70.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_61.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_62.n_70.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_62.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_63.n_65.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_63.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_64.n_65.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_64.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_65.n_64.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_65.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_66.n_58.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_66.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_67.n_57.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_67.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_68.n_56.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_68.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_69.n_54.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_69.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_6.n_727.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_6.n_727.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_70.n_47.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_70.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_71.n_46.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_71.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HEK354-Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_0.n_15899.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_0.n_15899.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_10.n_184.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_10.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_11.n_176.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_11.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_12.n_131.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_12.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_13.n_117.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_13.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_14.n_114.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_14.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_15.n_110.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_15.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_16.n_72.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_16.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_17.n_71.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_17.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_18.n_66.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_18.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_19.n_39.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_19.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_1.n_1231.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_1.n_1231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_20.n_28.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_20.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_2.n_1150.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_2.n_1150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_3.n_744.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_3.n_744.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_4.n_387.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_4.n_387.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_5.n_331.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_5.n_331.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_6.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_7.n_225.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_7.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_8.n_196.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_8.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_9.n_189.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-HepG2-ENCSR945QEW.bestfold.profile.pattern_9.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_0.n_18117.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_0.n_18117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_10.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_11.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_12.n_30.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_12.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_1.n_661.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_1.n_661.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_2.n_577.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_2.n_577.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_3.n_359.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_3.n_359.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_4.n_193.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_4.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_5.n_145.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_5.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_6.n_125.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_6.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_7.n_78.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_7.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_8.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_9.n_44.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_9.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_0.n_22587.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_0.n_22587.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_10.n_158.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_10.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_11.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_12.n_114.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_12.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_13.n_106.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_13.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_14.n_95.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_14.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_15.n_91.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_15.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_16.n_82.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_16.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_17.n_50.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_17.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_18.n_40.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_18.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_19.n_37.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_19.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_1.n_673.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_1.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_20.n_35.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_20.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_21.n_29.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_21.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_22.n_25.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_22.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_23.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_2.n_540.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_2.n_540.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_3.n_494.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_3.n_494.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_4.n_357.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_4.n_357.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_5.n_233.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_5.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_6.n_199.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_6.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_7.n_194.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_7.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_8.n_184.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_8.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_9.n_183.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-ZNF121-WTC11-ENCSR203PCF.bestfold.profile.pattern_9.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_0.n_2492.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_0.n_2492.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_10.n_66.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_10.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_11.n_28.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_11.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_1.n_654.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_1.n_654.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_2.n_382.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_2.n_382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_3.n_319.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_3.n_319.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_5.n_201.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_5.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_6.n_138.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_6.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_7.n_135.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_7.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_8.n_123.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_8.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_9.n_78.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK293-ENCSR604VWJ.bestfold.profile.pattern_9.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_0.n_465.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_0.n_465.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_10.n_150.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_10.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_11.n_148.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_11.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_12.n_118.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_12.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_13.n_84.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_13.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_14.n_36.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_14.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_15.n_35.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_15.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_16.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_1.n_335.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_1.n_335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_2.n_308.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_2.n_308.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_3.n_239.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_3.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_4.n_211.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_4.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_5.n_208.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_5.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_6.n_196.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_6.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_7.n_188.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_7.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_8.n_162.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_8.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_9.n_158.PWM.meme motif-alignments-all-vs-all/ZSCAN12/ZSCAN12-201-vs-ZSCAN12-HepG2-ENCSR574YRZ.bestfold.profile.pattern_9.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_0.n_7289.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_0.n_7289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_10.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_1.n_2634.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_1.n_2634.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_2.n_2158.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_2.n_2158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_3.n_1455.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_3.n_1455.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_4.n_761.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_4.n_761.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_5.n_713.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_5.n_713.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_6.n_517.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_6.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_7.n_394.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_7.n_394.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_8.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK293-ENCSR006GAQ.bestfold.profile.pattern_9.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_10.n_252.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_10.n_252.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_11.n_249.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_11.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_12.n_206.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_12.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_13.n_201.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_13.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_14.n_183.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_14.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_15.n_153.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_15.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_16.n_142.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_16.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_17.n_128.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_17.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_18.n_112.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_18.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_19.n_81.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_19.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_1.n_871.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_1.n_871.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_20.n_74.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_20.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_21.n_71.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_21.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_22.n_22.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_22.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_2.n_746.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_2.n_746.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_3.n_572.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_3.n_572.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_4.n_451.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_4.n_451.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_5.n_400.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_5.n_400.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_6.n_399.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_6.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_7.n_377.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_7.n_377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_8.n_371.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_8.n_371.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_9.n_278.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_9.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_0.n_3980.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_0.n_3980.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_10.n_49.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_10.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_11.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_12.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_13.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_14.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_1.n_1335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_2.n_1119.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_2.n_1119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_3.n_306.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_3.n_306.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_4.n_283.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_4.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_5.n_237.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_5.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_6.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_7.n_85.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_7.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_8.n_79.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_8.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-KLF1-K562-ENCSR550HCT.bestfold.profile.pattern_9.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-207-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_0.n_3053.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_0.n_3053.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_10.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_11.n_146.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_11.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_12.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_13.n_89.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_13.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_14.n_88.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_14.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_15.n_81.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_15.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_16.n_59.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_16.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_17.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_18.n_26.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_18.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_19.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_1.n_2638.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_1.n_2638.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_2.n_2543.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_2.n_2543.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_3.n_469.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_3.n_469.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_4.n_323.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_4.n_323.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_5.n_289.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_5.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_6.n_276.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_6.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_7.n_262.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_7.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_8.n_219.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_8.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF646-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_9.n_173.PWM.meme motif-alignments-all-vs-all/ZNF646/ZNF646-201-vs-ZNF646-HepG2-ENCSR488ZNK.bestfold.profile.pattern_9.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_10.n_208.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_10.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_11.n_163.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_11.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_12.n_138.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_12.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_13.n_128.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_13.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_14.n_97.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_14.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_16.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_17.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_1.n_3594.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_1.n_3594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_2.n_2076.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_2.n_2076.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_3.n_1938.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_3.n_1938.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_4.n_1634.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_4.n_1634.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_5.n_1580.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_5.n_1580.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_6.n_1418.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_6.n_1418.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_7.n_973.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_7.n_973.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_8.n_870.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_8.n_870.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_9.n_329.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_9.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_0.n_5280.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_0.n_5280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_10.n_191.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_10.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_11.n_128.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_11.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_12.n_90.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_12.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_13.n_60.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_13.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_14.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_15.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_16.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_17.n_24.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_17.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_18.n_23.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_18.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_19.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_1.n_1062.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_1.n_1062.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_2.n_939.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_2.n_939.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_3.n_933.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_3.n_933.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_4.n_756.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_4.n_756.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_5.n_668.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_5.n_668.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_6.n_668.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_6.n_668.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_7.n_393.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_7.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_8.n_341.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_8.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_9.n_270.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-201-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_9.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_10.n_208.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_10.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_11.n_163.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_11.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_12.n_138.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_12.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_13.n_128.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_13.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_14.n_97.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_14.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_16.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_17.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_1.n_3594.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_1.n_3594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_2.n_2076.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_2.n_2076.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_3.n_1938.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_3.n_1938.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_4.n_1634.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_4.n_1634.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_5.n_1580.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_5.n_1580.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_6.n_1418.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_6.n_1418.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_7.n_973.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_7.n_973.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_8.n_870.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_8.n_870.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_9.n_329.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_9.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_0.n_5280.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_0.n_5280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_10.n_191.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_10.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_11.n_128.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_11.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_12.n_90.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_12.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_13.n_60.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_13.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_14.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_15.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_16.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_17.n_24.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_17.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_18.n_23.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_18.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_19.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_1.n_1062.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_1.n_1062.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_2.n_939.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_2.n_939.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_3.n_933.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_3.n_933.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_4.n_756.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_4.n_756.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_5.n_668.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_5.n_668.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_6.n_668.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_6.n_668.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_7.n_393.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_7.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_8.n_341.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_8.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_9.n_270.PWM.meme motif-alignments-all-vs-all/ZNF644/ZNF644-212-vs-ZNF644-K562-ENCSR729HVR.bestfold.profile.pattern_9.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_0.n_6437.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_0.n_6437.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_10.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_1.n_3095.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_1.n_3095.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_2.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_3.n_286.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_3.n_286.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_4.n_271.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_4.n_271.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_5.n_181.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_5.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_6.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_7.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_8.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_9.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK569-Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ZNF680-HEK570-ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_0.n_269.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_0.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_10.n_81.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_10.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_11.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_12.n_58.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_12.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_13.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_14.n_54.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_14.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_15.n_51.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_15.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_16.n_51.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_16.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_17.n_37.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_17.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_18.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_19.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_1.n_120.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_1.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_20.n_23.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_20.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_2.n_115.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_2.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_3.n_114.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_3.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_4.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_5.n_107.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_5.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_6.n_99.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_6.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_7.n_90.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_7.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_8.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_9.n_83.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_9.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_0.n_237.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_0.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_1.n_188.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_1.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_2.n_151.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_2.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_3.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_4.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_5.n_49.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_5.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_6.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_7.n_33.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_7.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF302/ZNF302-201-vs-ZNF302-HEK293-ENCSR513MGG.bestfold.profile.pattern_9.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_0.n_3696.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_0.n_3696.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_10.n_379.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_10.n_379.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_11.n_265.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_11.n_265.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_12.n_180.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_12.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_13.n_62.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_13.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_14.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_15.n_48.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_15.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_16.n_39.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_16.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_17.n_35.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_17.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_18.n_34.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_18.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_19.n_30.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_19.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_1.n_2996.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_1.n_2996.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_20.n_26.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_20.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_2.n_2377.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_2.n_2377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_3.n_1151.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_3.n_1151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_4.n_1138.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_4.n_1138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_5.n_1018.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_5.n_1018.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_6.n_710.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_6.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_7.n_690.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_7.n_690.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_8.n_399.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_8.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF503-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_9.n_386.PWM.meme motif-alignments-all-vs-all/ZNF503/ZNF503-201-vs-ZNF503-HepG2-ENCSR998YJI.bestfold.profile.pattern_9.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_0.n_11151.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_0.n_11151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_1.n_2479.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_1.n_2479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_2.n_2203.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_2.n_2203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_3.n_1850.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_3.n_1850.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_4.n_1701.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_4.n_1701.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_5.n_542.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_5.n_542.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_6.n_388.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_6.n_388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_7.n_100.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_7.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_8.n_51.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_8.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_9.n_45.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_9.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_0.n_641.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_0.n_641.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_10.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_11.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_12.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_13.n_36.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_13.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_14.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_1.n_133.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_1.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_2.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_3.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_4.n_76.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_4.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_5.n_68.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_5.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_6.n_62.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_6.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_8.n_48.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_8.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF398/ZNF398-202-vs-ZNF398-K562-ENCSR948JND.bestfold.profile.pattern_9.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_0.n_566.PWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_0.n_566.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_1.n_355.PWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_1.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_2.n_203.PWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_2.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_3.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_4.n_50.PWM.meme motif-alignments-all-vs-all/ZNF544/ZNF544-201-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_4.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_0.n_1701.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_0.n_1701.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_1.n_495.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_1.n_495.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_2.n_440.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_2.n_440.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_3.n_308.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_3.n_308.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_4.n_209.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_4.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_5.n_107.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_5.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_6.n_67.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_6.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_7.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_8.n_44.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HEK293-ENCSR909TSW.bestfold.profile.pattern_8.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_0.n_1732.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_0.n_1732.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_10.n_309.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_10.n_309.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_11.n_251.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_11.n_251.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_12.n_210.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_12.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_13.n_148.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_13.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_14.n_114.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_14.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_15.n_103.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_15.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_16.n_68.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_16.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_17.n_62.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_17.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_18.n_46.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_18.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_19.n_43.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_19.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_1.n_1510.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_1.n_1510.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_20.n_38.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_20.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_21.n_33.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_21.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_22.n_21.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_22.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_23.n_20.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_23.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_2.n_1340.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_2.n_1340.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_3.n_1104.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_3.n_1104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_4.n_715.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_4.n_715.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_5.n_637.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_5.n_637.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_6.n_621.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_6.n_621.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_7.n_504.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_7.n_504.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_8.n_457.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_8.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_9.n_380.PWM.meme motif-alignments-all-vs-all/ZNF547/ZNF547-201-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_9.n_380.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_0.n_1155.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_0.n_1155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_10.n_227.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_10.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_11.n_155.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_11.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_12.n_114.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_12.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_13.n_110.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_13.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_14.n_81.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_14.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_15.n_78.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_15.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_16.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_1.n_1115.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_1.n_1115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_2.n_398.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_2.n_398.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_3.n_389.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_3.n_389.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_4.n_377.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_4.n_377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_5.n_328.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_5.n_328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_6.n_303.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_6.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_7.n_276.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_7.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_8.n_229.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_8.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF546-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_9.n_228.PWM.meme motif-alignments-all-vs-all/ZNF546/ZNF546-201-vs-ZNF546-HepG2-ENCSR782WWY.bestfold.profile.pattern_9.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_0.n_1805.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_0.n_1805.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_10.n_261.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_10.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_11.n_228.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_11.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_12.n_183.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_12.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_13.n_182.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_13.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_14.n_175.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_14.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_15.n_165.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_15.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_16.n_109.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_16.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_17.n_87.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_17.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_18.n_85.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_18.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_19.n_80.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_19.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_1.n_1751.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_1.n_1751.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_20.n_72.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_20.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_21.n_52.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_21.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_22.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_23.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_2.n_1198.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_2.n_1198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_3.n_479.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_3.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_4.n_447.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_4.n_447.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_5.n_399.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_5.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_6.n_383.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_6.n_383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_7.n_331.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_7.n_331.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_8.n_294.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_8.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_9.n_270.PWM.meme motif-alignments-all-vs-all/ZNF543/ZNF543-201-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_9.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_10.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_11.n_28.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_11.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_12.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_1.n_2196.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_1.n_2196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_2.n_1778.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_2.n_1778.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_3.n_1570.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_3.n_1570.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_4.n_1063.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_4.n_1063.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_5.n_856.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_5.n_856.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_6.n_779.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_6.n_779.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_7.n_143.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_7.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_8.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_9.n_48.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-201-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_9.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_10.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_11.n_28.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_11.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_12.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_1.n_2196.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_1.n_2196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_2.n_1778.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_2.n_1778.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_3.n_1570.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_3.n_1570.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_4.n_1063.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_4.n_1063.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_5.n_856.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_5.n_856.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_6.n_779.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_6.n_779.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_7.n_143.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_7.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_8.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_9.n_48.PWM.meme motif-alignments-all-vs-all/ZNF462/ZNF462-202-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_9.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_0.n_1228.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_0.n_1228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_10.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_11.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_12.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_1.n_1194.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_1.n_1194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_2.n_965.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_2.n_965.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_3.n_791.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_3.n_791.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_4.n_157.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_4.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_5.n_154.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_5.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_6.n_122.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_6.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_7.n_74.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_7.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_8.n_62.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_8.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_9.n_58.PWM.meme motif-alignments-all-vs-all/ZNF391/ZNF391-201-vs-ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_9.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HEK483-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_0.n_8846.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_0.n_8846.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_10.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_1.n_7397.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_1.n_7397.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_2.n_1127.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_2.n_1127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_3.n_635.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_3.n_635.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_4.n_246.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_4.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_5.n_164.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_5.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_6.n_144.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_6.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_7.n_119.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_7.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_8.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_9.n_75.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_9.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_0.n_2271.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_0.n_2271.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_1.n_443.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_1.n_443.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_2.n_159.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_2.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_3.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_4.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_5.n_124.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_5.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_6.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_7.n_97.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_7.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_8.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_14.n_39.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_14.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_152.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_103.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_99.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_6.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_7.n_66.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_7.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_8.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK515-Hughes_GR_models_ZNF549.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_56.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HEK516-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_0.n_925.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_0.n_925.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_10.n_37.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_10.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_1.n_255.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_1.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_2.n_252.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_2.n_252.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_3.n_209.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_3.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_4.n_144.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_4.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_5.n_122.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_5.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_6.n_119.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_6.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_7.n_93.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_7.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_8.n_64.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_8.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_9.n_40.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ZNF549-HepG2-ENCSR545ACM.bestfold.profile.pattern_9.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_0.n_1028.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_0.n_1028.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_1.n_963.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_1.n_963.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_2.n_219.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_2.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_3.n_121.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_3.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_4.n_98.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_4.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_5.n_86.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_5.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_6.n_83.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_6.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_7.n_78.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_7.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_8.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_9.n_45.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HEK293-ENCSR892ZTO.bestfold.profile.pattern_9.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_0.n_2478.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_0.n_2478.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_10.n_231.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_10.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_11.n_194.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_11.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_12.n_126.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_12.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_13.n_104.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_13.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_14.n_85.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_14.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_15.n_55.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_15.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_1.n_1020.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_1.n_1020.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_2.n_880.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_2.n_880.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_3.n_510.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_3.n_510.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_4.n_452.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_4.n_452.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_5.n_432.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_5.n_432.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_6.n_335.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_6.n_335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_7.n_306.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_7.n_306.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_8.n_272.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_8.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_9.n_269.PWM.meme motif-alignments-all-vs-all/ZNF548/ZNF548-201-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_9.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_0.n_99.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_0.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_10.n_37.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_10.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_1.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_2.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_3.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_4.n_55.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_4.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_5.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_6.n_48.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_6.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_7.n_47.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_7.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_8.n_43.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_8.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF396-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF396/ZNF396-201-vs-ZNF396-WTC11-ENCSR422ODX.bestfold.profile.pattern_9.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_0.n_520.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_0.n_520.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_11.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_1.n_206.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_1.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_2.n_179.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_2.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_3.n_134.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_3.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_4.n_69.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_4.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_6.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_7.n_48.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_7.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_8.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF397/ZNF397-202-vs-ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_9.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_0.n_15888.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_0.n_15888.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_1.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_2.n_71.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_2.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_3.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_4.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_5.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_7.n_26.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_7.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_8.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK293-ENCSR605MGM.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_0.n_567.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_0.n_567.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_10.n_186.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_10.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_11.n_179.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_11.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_12.n_176.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_12.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_13.n_166.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_13.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_14.n_159.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_14.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_15.n_159.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_15.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_16.n_141.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_16.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_17.n_132.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_17.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_18.n_128.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_18.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_19.n_121.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_19.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_1.n_566.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_1.n_566.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_20.n_118.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_20.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_21.n_77.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_21.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_22.n_67.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_22.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_23.n_58.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_23.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_24.n_35.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_24.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_2.n_553.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_2.n_553.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_3.n_442.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_3.n_442.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_4.n_352.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_4.n_352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_5.n_294.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_5.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_6.n_252.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_6.n_252.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_7.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_8.n_205.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_8.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_9.n_197.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-202-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_9.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_0.n_567.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_0.n_567.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_10.n_186.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_10.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_11.n_179.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_11.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_12.n_176.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_12.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_13.n_166.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_13.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_14.n_159.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_14.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_15.n_159.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_15.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_16.n_141.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_16.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_17.n_132.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_17.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_18.n_128.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_18.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_19.n_121.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_19.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_1.n_566.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_1.n_566.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_20.n_118.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_20.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_21.n_77.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_21.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_22.n_67.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_22.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_23.n_58.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_23.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_24.n_35.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_24.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_2.n_553.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_2.n_553.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_3.n_442.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_3.n_442.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_4.n_352.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_4.n_352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_5.n_294.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_5.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_6.n_252.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_6.n_252.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_7.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_8.n_205.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_8.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDC-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_9.n_197.PWM.meme motif-alignments-all-vs-all/ZXDC/ZXDC-204-vs-ZXDC-HepG2-ENCSR347PUQ.bestfold.profile.pattern_9.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_11.n_48.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_11.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_12.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_13.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_14.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK402-Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HEK403-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_0.n_4053.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_0.n_4053.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_10.n_348.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_10.n_348.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_11.n_246.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_11.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_12.n_206.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_12.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_13.n_203.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_13.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_14.n_146.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_14.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_15.n_129.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_15.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_16.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_17.n_39.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_17.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_1.n_2390.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_1.n_2390.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_2.n_1588.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_2.n_1588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_3.n_1275.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_3.n_1275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_4.n_1083.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_4.n_1083.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_5.n_712.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_5.n_712.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_6.n_646.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_6.n_646.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_7.n_388.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_7.n_388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_8.n_383.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_8.n_383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_9.n_380.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_9.n_380.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_0.n_3456.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_0.n_3456.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_1.n_706.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_1.n_706.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_2.n_706.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_2.n_706.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_3.n_388.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_3.n_388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_4.n_199.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_4.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_5.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK293-ENCSR466VYP.bestfold.profile.pattern_7.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_0.n_150.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_0.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_10.n_39.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_10.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_11.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_14.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_15.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_1.n_86.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_1.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_2.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_3.n_64.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_3.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_4.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_5.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_6.n_56.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_6.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_7.n_48.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_7.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_8.n_44.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_8.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_9.n_40.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-ZNF260-HepG2-ENCSR024ZIS.bestfold.profile.pattern_9.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ZFP69-HEK337-ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_0.n_17315.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_0.n_17315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_10.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_11.n_27.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_11.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_12.n_27.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_12.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_1.n_3111.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_1.n_3111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_2.n_2525.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_2.n_2525.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_3.n_986.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_3.n_986.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_4.n_186.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_4.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_5.n_175.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_5.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_6.n_143.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_6.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_7.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_8.n_113.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_8.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK293-ENCSR000EVD.bestfold.profile.pattern_9.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HEK401-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_0.n_14917.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_0.n_14917.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_10.n_168.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_10.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_11.n_150.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_11.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_12.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_13.n_112.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_13.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_14.n_58.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_14.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_15.n_43.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_15.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_1.n_4092.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_1.n_4092.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_2.n_1877.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_2.n_1877.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_3.n_1708.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_3.n_1708.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_4.n_538.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_4.n_538.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_5.n_398.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_5.n_398.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_6.n_369.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_6.n_369.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_7.n_313.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_7.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_8.n_248.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_8.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_9.n_197.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-HepG2-ENCSR313MMD.bestfold.profile.pattern_9.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_0.n_2603.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_0.n_2603.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_1.n_708.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_1.n_708.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_2.n_674.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_2.n_674.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_3.n_355.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_3.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_4.n_273.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_4.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_5.n_168.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_5.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_6.n_90.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_6.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_7.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_8.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR000EWN.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_0.n_9508.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_0.n_9508.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_10.n_136.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_10.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_11.n_91.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_11.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_12.n_90.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_12.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_13.n_67.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_13.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_14.n_62.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_14.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_15.n_52.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_15.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_16.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_17.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_1.n_1815.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_1.n_1815.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_2.n_647.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_2.n_647.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_3.n_560.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_3.n_560.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_4.n_344.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_4.n_344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_5.n_244.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_5.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_6.n_203.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_6.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_7.n_196.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_7.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_8.n_195.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_8.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_9.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_0.n_3644.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_0.n_3644.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_10.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_11.n_31.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_11.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_12.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_13.n_26.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_13.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_14.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_15.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_1.n_1389.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_1.n_1389.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_2.n_192.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_2.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_3.n_109.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_3.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_4.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_5.n_85.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_5.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_6.n_83.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_6.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_7.n_64.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_7.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_8.n_53.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_8.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ZNF263-WTC11-ENCSR156JWW.bestfold.profile.pattern_9.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HEK336-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HEK336-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_1.n_804.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_1.n_804.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_2.n_320.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_2.n_320.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_3.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_4.n_107.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_4.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_5.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_6.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HEK336-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HEK336-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_1.n_804.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_1.n_804.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_2.n_320.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_2.n_320.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_3.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_4.n_107.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_4.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_5.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_6.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP62-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_0.n_365.PWM.meme motif-alignments-all-vs-all/ZFP62/ZFP62-201-vs-ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_0.n_365.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP62-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_1.n_111.PWM.meme motif-alignments-all-vs-all/ZFP62/ZFP62-201-vs-ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_1.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP62-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_2.n_91.PWM.meme motif-alignments-all-vs-all/ZFP62/ZFP62-201-vs-ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_2.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP62-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all/ZFP62/ZFP62-201-vs-ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_3.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP62-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all/ZFP62/ZFP62-201-vs-ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_4.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP62-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_5.n_71.PWM.meme motif-alignments-all-vs-all/ZFP62/ZFP62-201-vs-ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_5.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP62-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_6.n_70.PWM.meme motif-alignments-all-vs-all/ZFP62/ZFP62-201-vs-ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_6.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP62-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all/ZFP62/ZFP62-201-vs-ZFP62-HepG2-ENCSR495RMN.bestfold.profile.pattern_7.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HEK339-Hughes_GR_models_ZFP82.bestfold.profile.pattern_8.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_0.n_1234.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_0.n_1234.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_10.n_232.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_10.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_11.n_228.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_11.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_12.n_161.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_12.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_13.n_152.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_13.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_14.n_132.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_14.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_15.n_127.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_15.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_16.n_126.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_16.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_17.n_81.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_17.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_18.n_68.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_18.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_19.n_67.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_19.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_1.n_720.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_1.n_720.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_2.n_643.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_2.n_643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_3.n_514.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_3.n_514.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_4.n_492.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_4.n_492.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_5.n_444.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_5.n_444.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_6.n_348.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_6.n_348.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_7.n_263.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_7.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_8.n_259.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_8.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_9.n_236.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_9.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_0.n_17014.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_0.n_17014.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_10.n_91.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_10.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_11.n_80.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_11.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_12.n_77.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_12.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_13.n_68.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_13.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_14.n_68.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_14.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_15.n_60.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_15.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_16.n_39.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_16.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_17.n_31.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_17.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_18.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_19.n_23.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_19.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_1.n_1133.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_1.n_1133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_2.n_686.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_2.n_686.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_3.n_395.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_3.n_395.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_4.n_371.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_4.n_371.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_5.n_341.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_5.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_6.n_289.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_6.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_7.n_284.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_7.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_8.n_238.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_8.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFHX2-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all/ZFHX2/ZFHX2-202-vs-ZFHX2-HEK293-ENCSR632SIM.bestfold.profile.pattern_9.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_0.n_2181.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_0.n_2181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_10.n_128.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_10.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_11.n_101.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_11.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_12.n_100.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_12.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_13.n_77.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_13.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_14.n_76.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_14.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_15.n_66.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_15.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_16.n_57.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_16.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_17.n_48.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_17.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_18.n_47.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_18.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_19.n_43.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_19.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_1.n_689.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_1.n_689.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_20.n_34.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_20.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_21.n_29.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_21.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_22.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_23.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_24.n_27.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_24.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_25.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_26.n_24.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_26.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_27.n_24.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_27.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_2.n_392.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_2.n_392.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_3.n_361.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_3.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_4.n_203.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_4.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_5.n_181.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_5.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_6.n_174.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_6.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_7.n_162.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_7.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_8.n_158.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_8.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_9.n_155.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HEK293-ENCSR451CYX.bestfold.profile.pattern_9.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_0.n_2841.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_0.n_2841.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_10.n_193.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_10.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_11.n_177.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_11.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_12.n_155.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_12.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_13.n_112.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_13.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_14.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_15.n_93.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_15.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_16.n_89.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_16.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_17.n_86.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_17.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_18.n_71.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_18.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_19.n_68.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_19.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_1.n_1007.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_1.n_1007.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_20.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_21.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_22.n_26.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_22.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_23.n_21.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_23.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_2.n_994.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_2.n_994.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_3.n_914.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_3.n_914.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_4.n_665.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_4.n_665.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_5.n_564.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_5.n_564.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_6.n_444.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_6.n_444.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_7.n_421.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_7.n_421.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_8.n_407.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_8.n_407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_9.n_213.PWM.meme motif-alignments-all-vs-all/ZNF280D/ZNF280D-201-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_9.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_0.n_388.PWM.meme motif-alignments-all-vs-all/ZNF280C/ZNF280C-201-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_0.n_388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_1.n_161.PWM.meme motif-alignments-all-vs-all/ZNF280C/ZNF280C-201-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_1.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF280C/ZNF280C-201-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_2.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF280C/ZNF280C-201-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_3.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_0.n_1430.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_0.n_1430.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_10.n_195.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_10.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_11.n_187.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_11.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_12.n_176.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_12.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_13.n_168.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_13.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_14.n_154.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_14.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_15.n_148.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_15.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_16.n_138.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_16.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_17.n_127.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_17.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_18.n_124.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_18.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_19.n_112.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_19.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_1.n_1257.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_1.n_1257.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_20.n_63.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_20.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_21.n_56.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_21.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_22.n_52.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_22.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_23.n_48.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_23.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_24.n_42.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_24.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_25.n_35.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_25.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_26.n_30.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_26.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_27.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_2.n_1239.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_2.n_1239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_3.n_820.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_3.n_820.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_4.n_503.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_4.n_503.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_5.n_285.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_5.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_6.n_284.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_6.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_7.n_261.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_7.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_8.n_216.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_8.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_9.n_204.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-HepG2-ENCSR940EZR.bestfold.profile.pattern_9.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_0.n_431.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_0.n_431.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_11.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_12.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_1.n_180.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_1.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_2.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_3.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_4.n_57.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_4.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_5.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_6.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_7.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_8.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF280B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/ZNF280B/ZNF280B-201-vs-ZNF280B-K562-ENCSR775FSH.bestfold.profile.pattern_9.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_32.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_193.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_187.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_139.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_120.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_112.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_111.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_0.n_381.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_0.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_10.n_146.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_10.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_11.n_133.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_11.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_12.n_133.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_12.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_13.n_125.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_13.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_14.n_119.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_14.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_15.n_115.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_15.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_16.n_104.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_16.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_17.n_103.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_17.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_18.n_102.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_18.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_19.n_87.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_19.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_1.n_362.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_1.n_362.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_20.n_87.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_20.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_21.n_86.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_21.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_22.n_62.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_22.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_23.n_60.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_23.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_24.n_58.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_24.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_25.n_49.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_25.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_26.n_47.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_26.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_27.n_44.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_27.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_28.n_42.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_28.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_29.n_38.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_29.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_2.n_345.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_2.n_345.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_30.n_38.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_30.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_31.n_36.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_31.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_32.n_32.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_32.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_33.n_31.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_33.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_34.n_31.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_34.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_35.n_30.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_35.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_36.n_24.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_36.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_37.n_22.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_37.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_38.n_22.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_38.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_39.n_20.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_39.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_3.n_341.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_3.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_40.n_20.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_40.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_4.n_337.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_4.n_337.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_5.n_223.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_5.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_6.n_179.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_6.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_7.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_8.n_158.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_8.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_9.n_154.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-ZNF280A-K562-ENCSR370NFS.bestfold.profile.pattern_9.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_0.n_6064.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_0.n_6064.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_10.n_338.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_10.n_338.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_11.n_331.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_11.n_331.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_12.n_311.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_12.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_13.n_269.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_13.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_14.n_267.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_14.n_267.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_15.n_256.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_15.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_16.n_246.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_16.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_17.n_234.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_17.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_18.n_231.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_18.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_19.n_210.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_19.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_1.n_1895.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_1.n_1895.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_20.n_175.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_20.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_21.n_170.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_21.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_22.n_163.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_22.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_23.n_143.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_23.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_24.n_132.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_24.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_25.n_129.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_25.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_26.n_125.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_26.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_27.n_114.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_27.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_28.n_106.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_28.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_29.n_100.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_29.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_2.n_1064.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_2.n_1064.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_30.n_99.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_30.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_31.n_94.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_31.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_32.n_81.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_32.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_33.n_79.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_33.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_34.n_74.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_34.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_35.n_73.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_35.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_36.n_60.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_36.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_37.n_59.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_37.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_38.n_54.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_38.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_39.n_51.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_39.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_3.n_1025.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_3.n_1025.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_40.n_34.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_40.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_41.n_28.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_41.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_42.n_27.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_42.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_43.n_27.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_43.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_44.n_23.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_44.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_4.n_1018.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_4.n_1018.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_5.n_711.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_5.n_711.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_6.n_700.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_6.n_700.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_7.n_521.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_7.n_521.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_8.n_461.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_8.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF395-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_9.n_384.PWM.meme motif-alignments-all-vs-all/ZNF395/ZNF395-201-vs-ZNF395-K562-ENCSR462QZZ.bestfold.profile.pattern_9.n_384.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_0.n_72.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_0.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_10.n_36.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_10.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_11.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_12.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_13.n_28.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_13.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_14.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_1.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_2.n_60.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_2.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_3.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_4.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_5.n_50.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_5.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_6.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_7.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_8.n_44.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_8.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF699-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_9.n_41.PWM.meme motif-alignments-all-vs-all/ZNF699/ZNF699-201-vs-ZNF699-K562-ENCSR303SHG.bestfold.profile.pattern_9.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_11.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_12.n_46.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_12.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_13.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_14.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_15.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_16.n_31.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_16.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_17.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_18.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_1.n_199.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_1.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_2.n_152.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_2.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_3.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_4.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_5.n_78.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_5.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_6.n_78.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_6.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_7.n_74.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_7.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_8.n_72.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_8.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-201-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_11.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_12.n_46.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_12.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_13.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_14.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_15.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_16.n_31.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_16.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_17.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_18.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_1.n_199.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_1.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_2.n_152.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_2.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_3.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_4.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_5.n_78.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_5.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_6.n_78.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_6.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_7.n_74.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_7.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_8.n_72.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_8.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF57/ZNF57-205-vs-ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_0.n_2516.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_0.n_2516.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_10.n_277.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_10.n_277.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_11.n_243.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_11.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_12.n_207.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_12.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_13.n_95.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_13.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_14.n_88.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_14.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_15.n_85.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_15.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_16.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_1.n_1300.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_1.n_1300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_2.n_1145.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_2.n_1145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_3.n_1140.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_3.n_1140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_4.n_1021.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_4.n_1021.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_5.n_710.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_5.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_6.n_560.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_6.n_560.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_7.n_508.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_7.n_508.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_8.n_374.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_8.n_374.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_9.n_311.PWM.meme motif-alignments-all-vs-all/ZNF691/ZNF691-201-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_9.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_0.n_6169.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_0.n_6169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_10.n_200.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_10.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_11.n_169.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_11.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_12.n_165.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_12.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_13.n_115.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_13.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_14.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_15.n_75.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_15.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_16.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_1.n_4230.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_1.n_4230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_2.n_2612.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_2.n_2612.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_3.n_2353.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_3.n_2353.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_4.n_2223.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_4.n_2223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_5.n_2137.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_5.n_2137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_6.n_658.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_6.n_658.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_7.n_449.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_7.n_449.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_8.n_429.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_8.n_429.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_9.n_260.PWM.meme motif-alignments-all-vs-all/ZNF692/ZNF692-201-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_9.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-HEK577-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_0.n_172.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_0.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_10.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_1.n_85.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_1.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_2.n_81.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_2.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_3.n_81.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_3.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_4.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_5.n_67.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_5.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_6.n_52.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_6.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_7.n_48.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_7.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_8.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_0.n_2238.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_0.n_2238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_10.n_215.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_10.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_11.n_117.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_11.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_12.n_57.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_12.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_13.n_57.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_13.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_14.n_56.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_14.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_1.n_1186.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_1.n_1186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_2.n_855.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_2.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_3.n_706.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_3.n_706.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_4.n_620.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_4.n_620.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_5.n_544.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_5.n_544.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_6.n_335.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_6.n_335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_7.n_307.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_7.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_8.n_293.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_8.n_293.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_9.n_251.PWM.meme motif-alignments-all-vs-all/ZNF697/ZNF697-201-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_9.n_251.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_0.n_243.PWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_0.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_1.n_165.PWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_1.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_2.n_87.PWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_2.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_3.n_81.PWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_3.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_4.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_6.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all/ZNF696/ZNF696-201-vs-ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_0.n_3441.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_0.n_3441.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_10.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_11.n_34.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_11.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_12.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_14.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_1.n_1269.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_1.n_1269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_2.n_1092.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_2.n_1092.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_3.n_664.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_3.n_664.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_4.n_367.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_4.n_367.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_6.n_162.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_6.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_7.n_76.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_7.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_8.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_9.n_61.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-GM12878-ENCSR173ZVL.bestfold.profile.pattern_9.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_0.n_5462.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_0.n_5462.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_10.n_305.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_10.n_305.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_11.n_228.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_11.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_12.n_218.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_12.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_13.n_161.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_13.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_14.n_146.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_14.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_15.n_142.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_15.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_16.n_128.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_16.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_17.n_97.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_17.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_18.n_77.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_18.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_19.n_69.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_19.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_1.n_4127.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_1.n_4127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_20.n_65.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_20.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_21.n_61.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_21.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_22.n_47.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_22.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_23.n_40.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_23.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_24.n_29.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_24.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_25.n_28.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_25.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_26.n_28.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_26.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_27.n_26.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_27.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_2.n_3013.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_2.n_3013.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_3.n_2776.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_3.n_2776.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_4.n_2639.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_4.n_2639.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_5.n_2062.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_5.n_2062.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_6.n_1060.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_6.n_1060.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_7.n_586.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_7.n_586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_8.n_388.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_8.n_388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_9.n_308.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-K562-ENCSR249BHQ.bestfold.profile.pattern_9.n_308.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_0.n_69.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_0.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_1.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_2.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_3.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_4.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_6.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_7.n_26.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_7.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR028NUR.bestfold.profile.pattern_8.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_0.n_1431.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_0.n_1431.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_10.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_11.n_78.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_11.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_12.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_13.n_74.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_13.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_14.n_54.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_14.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_15.n_38.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_15.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_16.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_17.n_33.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_17.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_1.n_563.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_1.n_563.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_2.n_198.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_2.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_3.n_159.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_3.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_4.n_118.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_4.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_5.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_6.n_100.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_6.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_7.n_100.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_7.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_8.n_97.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_8.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_9.n_93.PWM.meme motif-alignments-all-vs-all/ZNF592/ZNF592-201-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_9.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_0.n_7643.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_0.n_7643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_10.n_118.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_10.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_11.n_87.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_11.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_12.n_65.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_12.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_13.n_53.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_13.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_14.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_1.n_1439.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_1.n_1439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_2.n_1122.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_2.n_1122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_3.n_535.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_3.n_535.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_4.n_398.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_4.n_398.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_5.n_363.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_5.n_363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_6.n_355.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_6.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_7.n_349.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_7.n_349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_8.n_214.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_8.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_9.n_214.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_9.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK542-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK542-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF596-HEK542-Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-ZNF596-HEK542-Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_0.n_299.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_0.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_10.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_1.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_2.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_3.n_60.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_3.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_4.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_5.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_7.n_33.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_7.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_9.n_31.PWM.meme motif-alignments-all-vs-all/ZNF597/ZNF597-201-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_9.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_0.n_21524.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_0.n_21524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_10.n_51.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_10.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_11.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_12.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_13.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_14.n_24.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_14.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_1.n_3965.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_1.n_3965.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_2.n_1886.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_2.n_1886.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_3.n_1410.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_3.n_1410.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_4.n_378.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_4.n_378.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_5.n_321.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_5.n_321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_6.n_240.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_6.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_7.n_224.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_7.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_8.n_127.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_8.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF600-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF600/ZNF600-201-vs-ZNF600-HEK293-ENCSR017QBI.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_0.n_1738.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_0.n_1738.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_10.n_379.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_10.n_379.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_11.n_308.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_11.n_308.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_12.n_257.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_12.n_257.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_13.n_92.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_13.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_14.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_15.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_16.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_1.n_1617.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_1.n_1617.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_2.n_1012.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_2.n_1012.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_3.n_1011.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_3.n_1011.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_4.n_829.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_4.n_829.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_5.n_549.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_5.n_549.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_6.n_508.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_6.n_508.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_7.n_472.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_7.n_472.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_8.n_405.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_8.n_405.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF607-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_9.n_393.PWM.meme motif-alignments-all-vs-all/ZNF607/ZNF607-201-vs-ZNF607-HepG2-ENCSR788SXN.bestfold.profile.pattern_9.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HEK543-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_0.n_2455.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_0.n_2455.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_10.n_431.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_10.n_431.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_11.n_314.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_11.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_12.n_311.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_12.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_13.n_303.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_13.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_14.n_208.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_14.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_15.n_168.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_15.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_16.n_163.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_16.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_17.n_146.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_17.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_18.n_143.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_18.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_19.n_143.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_19.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_1.n_1316.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_1.n_1316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_20.n_116.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_20.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_21.n_102.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_21.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_22.n_82.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_22.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_23.n_68.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_23.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_24.n_44.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_24.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_25.n_33.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_25.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_26.n_30.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_26.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_2.n_1146.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_2.n_1146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_3.n_1116.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_3.n_1116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_4.n_921.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_4.n_921.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_5.n_735.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_5.n_735.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_6.n_708.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_6.n_708.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_7.n_637.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_7.n_637.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_8.n_592.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_8.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_9.n_502.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ZNF605-HepG2-ENCSR903JFF.bestfold.profile.pattern_9.n_502.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_0.n_2352.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_0.n_2352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_10.n_198.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_10.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_11.n_197.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_11.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_12.n_71.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_12.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_13.n_43.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_13.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_1.n_798.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_1.n_798.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_2.n_715.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_2.n_715.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_3.n_676.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_3.n_676.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_4.n_527.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_4.n_527.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_5.n_361.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_5.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_6.n_285.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_6.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_7.n_285.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_7.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_8.n_255.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_8.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_9.n_230.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-HepG2-ENCSR277VXX.bestfold.profile.pattern_9.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_0.n_450.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_0.n_450.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_11.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_12.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_13.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_14.n_29.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_14.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_16.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_1.n_142.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_1.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_2.n_136.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_2.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_3.n_132.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_3.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_4.n_122.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_4.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_5.n_117.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_5.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_6.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_7.n_86.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_7.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_8.n_72.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_8.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF608-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_9.n_63.PWM.meme motif-alignments-all-vs-all/ZNF608/ZNF608-201-vs-ZNF608-SK-N-SH-ENCSR837YGS.bestfold.profile.pattern_9.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_0.n_1466.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_0.n_1466.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_10.n_135.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_10.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_11.n_97.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_11.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_12.n_87.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_12.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_13.n_77.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_13.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_14.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_1.n_886.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_1.n_886.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_2.n_886.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_2.n_886.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_3.n_677.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_3.n_677.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_4.n_407.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_4.n_407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_5.n_292.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_5.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_6.n_286.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_6.n_286.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_7.n_186.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_7.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_8.n_159.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_8.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF160-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_9.n_139.PWM.meme motif-alignments-all-vs-all/ZNF160/ZNF160-202-vs-ZNF160-HepG2-ENCSR917SSX.bestfold.profile.pattern_9.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_0.n_9564.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_0.n_9564.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_10.n_281.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_10.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_11.n_170.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_11.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_12.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_13.n_118.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_13.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_14.n_101.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_14.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_15.n_79.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_15.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_16.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_16.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_17.n_43.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_17.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_19.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_1.n_4518.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_1.n_4518.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_2.n_3801.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_2.n_3801.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_3.n_3137.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_3.n_3137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_4.n_1056.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_4.n_1056.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_5.n_608.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_5.n_608.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_6.n_599.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_6.n_599.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_7.n_475.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_7.n_475.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_8.n_387.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_8.n_387.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_9.n_302.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_9.n_302.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_0.n_663.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_0.n_663.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_10.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_10.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_11.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_11.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_12.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_12.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_13.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_13.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_14.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_15.n_66.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_15.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_16.n_64.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_16.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_17.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_18.n_44.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_18.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_19.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_19.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_1.n_450.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_1.n_450.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_20.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_20.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_21.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_2.n_408.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_2.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_3.n_297.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_3.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_4.n_141.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_4.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_5.n_137.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_5.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_6.n_123.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_6.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_7.n_89.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_7.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_8.n_89.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_8.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_9.n_88.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_9.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_0.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_10.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_12.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_1.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_2.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_3.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-201-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_0.n_9564.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_0.n_9564.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_10.n_281.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_10.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_11.n_170.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_11.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_12.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_13.n_118.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_13.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_14.n_101.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_14.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_15.n_79.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_15.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_16.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_16.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_17.n_43.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_17.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_19.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_1.n_4518.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_1.n_4518.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_2.n_3801.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_2.n_3801.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_3.n_3137.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_3.n_3137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_4.n_1056.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_4.n_1056.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_5.n_608.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_5.n_608.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_6.n_599.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_6.n_599.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_7.n_475.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_7.n_475.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_8.n_387.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_8.n_387.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_9.n_302.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_9.n_302.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_0.n_663.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_0.n_663.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_10.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_10.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_11.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_11.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_12.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_12.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_13.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_13.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_14.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_15.n_66.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_15.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_16.n_64.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_16.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_17.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_18.n_44.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_18.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_19.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_19.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_1.n_450.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_1.n_450.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_20.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_20.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_21.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_2.n_408.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_2.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_3.n_297.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_3.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_4.n_141.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_4.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_5.n_137.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_5.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_6.n_123.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_6.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_7.n_89.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_7.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_8.n_89.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_8.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_9.n_88.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-HepG2-ENCSR625XAV.bestfold.profile.pattern_9.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_0.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_10.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_12.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_1.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_2.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_3.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB8A/ZBTB8A-202-vs-ZBTB8A-K562-ENCSR283ZNI.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_0.n_505.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_0.n_505.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_10.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_11.n_36.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_11.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_1.n_352.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_1.n_352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_2.n_229.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_2.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_3.n_175.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_3.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_4.n_147.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_4.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_5.n_98.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_5.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_6.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_7.n_79.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_7.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_8.n_78.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_8.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_9.n_66.PWM.meme motif-alignments-all-vs-all/ZNF165/ZNF165-201-vs-ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_9.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HEK342-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HEK342-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_0.n_1331.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_0.n_1331.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_10.n_207.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_10.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_11.n_175.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_11.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_12.n_174.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_12.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_13.n_117.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_13.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_14.n_115.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_14.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_15.n_111.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_15.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_16.n_103.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_16.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_17.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_18.n_81.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_18.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_19.n_46.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_19.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_1.n_1180.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_1.n_1180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_20.n_45.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_20.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_21.n_34.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_21.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_22.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_23.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_2.n_912.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_2.n_912.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_3.n_469.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_3.n_469.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_4.n_346.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_4.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_5.n_294.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_5.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_6.n_257.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_6.n_257.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_7.n_236.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_7.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_8.n_218.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_8.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_9.n_213.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ZIK1-HepG2-ENCSR862VDD.bestfold.profile.pattern_9.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_0.n_5162.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_0.n_5162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_1.n_4964.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_1.n_4964.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_2.n_121.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_2.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_3.n_96.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_3.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK293-ENCSR070HWF.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HEK596-Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_0.n_11181.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_0.n_11181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_10.n_101.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_10.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_11.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_12.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_13.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_14.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_1.n_8703.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_1.n_8703.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_2.n_8515.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_2.n_8515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_3.n_365.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_3.n_365.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_4.n_327.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_4.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_5.n_295.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_5.n_295.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_6.n_266.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_6.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_7.n_220.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_7.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_8.n_130.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_8.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_9.n_119.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-ZNF768-HepG2-ENCSR181ABP.bestfold.profile.pattern_9.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_0.n_1128.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_0.n_1128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_10.n_64.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_10.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_11.n_59.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_11.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_12.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_13.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_14.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_1.n_375.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_1.n_375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_2.n_220.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_2.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_3.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_4.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_5.n_93.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_5.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_6.n_89.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_6.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_7.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_8.n_75.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_8.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_9.n_66.PWM.meme motif-alignments-all-vs-all/ZNF764/ZNF764-201-vs-ZNF764-K562-ENCSR023OOE.bestfold.profile.pattern_9.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HEK595-ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_0.n_2123.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_0.n_2123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_10.n_158.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_10.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_11.n_118.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_11.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_12.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_13.n_53.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_13.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_14.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_1.n_1788.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_1.n_1788.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_2.n_515.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_2.n_515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_3.n_449.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_3.n_449.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_4.n_423.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_4.n_423.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_5.n_373.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_5.n_373.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_6.n_342.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_6.n_342.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_7.n_291.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_7.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_8.n_238.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_8.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_9.n_197.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-HepG2-ENCSR869RSW.bestfold.profile.pattern_9.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_0.n_6959.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_0.n_6959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_10.n_545.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_10.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_11.n_416.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_11.n_416.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_12.n_373.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_12.n_373.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_13.n_338.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_13.n_338.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_14.n_256.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_14.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_15.n_243.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_15.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_16.n_238.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_16.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_17.n_195.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_17.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_18.n_180.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_18.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_19.n_138.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_19.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_1.n_5053.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_1.n_5053.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_20.n_89.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_20.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_21.n_60.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_21.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_22.n_52.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_22.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_23.n_51.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_23.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_24.n_38.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_24.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_25.n_29.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_25.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_26.n_22.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_26.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_27.n_22.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_27.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_28.n_21.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_28.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_29.n_20.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_29.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_2.n_1959.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_2.n_1959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_30.n_20.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_30.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_3.n_1610.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_3.n_1610.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_4.n_1045.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_4.n_1045.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_5.n_979.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_5.n_979.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_6.n_971.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_6.n_971.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_8.n_701.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_8.n_701.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_9.n_569.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ZNF766-K562-ENCSR194IJN.bestfold.profile.pattern_9.n_569.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_0.n_2636.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_0.n_2636.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_10.n_171.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_10.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_11.n_168.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_11.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_12.n_163.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_12.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_13.n_140.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_13.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_14.n_132.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_14.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_15.n_115.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_15.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_16.n_82.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_16.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_17.n_73.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_17.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_18.n_56.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_18.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_19.n_48.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_19.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_1.n_1637.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_1.n_1637.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_20.n_47.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_20.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_21.n_42.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_21.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_22.n_39.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_22.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_23.n_33.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_23.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_24.n_27.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_24.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_2.n_1329.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_2.n_1329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_3.n_452.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_3.n_452.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_4.n_407.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_4.n_407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_5.n_385.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_5.n_385.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_6.n_346.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_6.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_7.n_320.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_7.n_320.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_8.n_182.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_8.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_9.n_176.PWM.meme motif-alignments-all-vs-all/ZNF761/ZNF761-202-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_9.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_0.n_3164.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_0.n_3164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_10.n_99.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_10.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_11.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_12.n_69.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_12.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_13.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_14.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_15.n_38.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_15.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_16.n_28.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_16.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_1.n_1875.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_1.n_1875.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_2.n_1648.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_2.n_1648.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_3.n_1074.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_3.n_1074.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_4.n_621.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_4.n_621.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_5.n_345.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_5.n_345.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_6.n_191.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_6.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_7.n_142.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_7.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_8.n_127.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_8.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_9.n_123.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_9.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK374-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK374-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-HEK374-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-HEK374-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_0.n_455.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_0.n_455.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_1.n_293.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_1.n_293.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_2.n_162.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_2.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_3.n_153.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_3.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_4.n_114.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_4.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_5.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_6.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_7.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR526HRN.bestfold.profile.pattern_8.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_0.n_1680.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_0.n_1680.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_10.n_104.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_10.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_11.n_84.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_11.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_12.n_72.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_12.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_13.n_58.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_13.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_14.n_56.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_14.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_15.n_44.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_15.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_16.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_19.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_1.n_1275.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_1.n_1275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_2.n_935.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_2.n_935.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_3.n_777.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_3.n_777.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_4.n_591.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_4.n_591.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_5.n_553.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_5.n_553.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_6.n_445.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_6.n_445.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_7.n_445.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_7.n_445.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_8.n_396.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_8.n_396.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_9.n_146.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_9.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_0.n_1721.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_0.n_1721.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_10.n_408.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_10.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_11.n_278.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_11.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_12.n_231.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_12.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_13.n_231.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_13.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_14.n_215.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_14.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_15.n_202.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_15.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_16.n_143.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_16.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_17.n_143.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_17.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_18.n_117.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_18.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_19.n_61.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_19.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_1.n_1561.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_1.n_1561.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_20.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_21.n_48.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_21.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_22.n_42.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_22.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_23.n_33.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_23.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_24.n_22.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_24.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_2.n_982.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_2.n_982.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_3.n_860.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_3.n_860.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_4.n_804.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_4.n_804.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_5.n_560.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_5.n_560.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_6.n_559.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_6.n_559.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_7.n_541.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_7.n_541.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_8.n_528.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_8.n_528.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_9.n_460.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-K562-ENCSR621ATC.bestfold.profile.pattern_9.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_0.n_898.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_0.n_898.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_10.n_139.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_10.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_11.n_124.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_11.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_12.n_114.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_12.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_13.n_104.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_13.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_14.n_95.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_14.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_15.n_88.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_15.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_16.n_87.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_16.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_17.n_72.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_17.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_18.n_43.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_18.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_19.n_39.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_19.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_1.n_840.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_1.n_840.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_20.n_23.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_20.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_2.n_585.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_2.n_585.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_3.n_471.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_3.n_471.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_4.n_460.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_4.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_5.n_325.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_5.n_325.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_6.n_249.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_6.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_7.n_189.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_7.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_8.n_156.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_8.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_9.n_143.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ZNF184-WTC11-ENCSR640STN.bestfold.profile.pattern_9.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_0.n_1102.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_0.n_1102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_10.n_311.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_10.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_11.n_291.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_11.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_12.n_289.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_12.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_13.n_285.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_13.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_14.n_249.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_14.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_15.n_178.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_15.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_16.n_148.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_16.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_17.n_129.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_17.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_18.n_93.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_18.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_19.n_78.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_19.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_1.n_504.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_1.n_504.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_20.n_72.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_20.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_21.n_46.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_21.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_22.n_36.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_22.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_2.n_503.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_2.n_503.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_3.n_456.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_3.n_456.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_4.n_450.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_4.n_450.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_5.n_376.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_5.n_376.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_6.n_371.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_6.n_371.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_7.n_345.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_7.n_345.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_8.n_344.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_8.n_344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_9.n_322.PWM.meme motif-alignments-all-vs-all/ZNF181/ZNF181-201-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_9.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HEK371-ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_0.n_236.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_0.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_10.n_90.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_10.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_11.n_86.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_11.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_12.n_77.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_12.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_13.n_76.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_13.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_14.n_68.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_14.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_15.n_54.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_15.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_16.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_17.n_37.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_17.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_18.n_36.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_18.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_1.n_226.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_1.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_2.n_204.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_2.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_3.n_165.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_3.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_4.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_5.n_146.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_5.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_6.n_123.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_6.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_7.n_116.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_7.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_8.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_9.n_93.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_9.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ZNF182-HEK373-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_0.n_13283.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_0.n_13283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_10.n_250.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_10.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_11.n_202.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_11.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_12.n_159.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_12.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_13.n_148.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_13.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_14.n_141.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_14.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_15.n_140.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_15.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_16.n_72.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_16.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_17.n_48.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_17.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_18.n_43.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_18.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_19.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_1.n_3334.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_1.n_3334.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_20.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_21.n_20.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_21.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_2.n_2250.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_2.n_2250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_3.n_2129.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_3.n_2129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_4.n_2111.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_4.n_2111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_5.n_724.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_5.n_724.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_6.n_632.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_6.n_632.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_7.n_404.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_7.n_404.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_8.n_327.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_8.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_9.n_317.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_9.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_676.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_676.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_645.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_645.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_484.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_190.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_177.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-ZNF189-HEK375-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_0.n_700.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_0.n_700.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_10.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_11.n_28.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_11.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_12.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_1.n_682.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_1.n_682.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_2.n_454.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_2.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_3.n_305.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_3.n_305.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_4.n_252.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_4.n_252.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_5.n_223.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_5.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_6.n_120.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_6.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_7.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_8.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/ZNF25/ZNF25-201-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_9.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_0.n_4280.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_0.n_4280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_11.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_1.n_3788.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_1.n_3788.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_2.n_3317.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_2.n_3317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_3.n_1741.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_3.n_1741.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_4.n_1336.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_4.n_1336.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_5.n_949.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_5.n_949.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_6.n_648.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_6.n_648.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_7.n_340.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_7.n_340.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_8.n_152.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_8.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_9.n_82.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-GM12878-ENCSR072PWP.bestfold.profile.pattern_9.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_0.n_3352.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_0.n_3352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_10.n_194.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_10.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_11.n_175.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_11.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_12.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_13.n_30.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_13.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_1.n_2856.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_1.n_2856.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_2.n_1730.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_2.n_1730.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_3.n_998.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_3.n_998.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_4.n_328.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_4.n_328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_5.n_328.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_5.n_328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_6.n_260.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_6.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_7.n_249.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_7.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_8.n_243.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_8.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_9.n_211.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HEK293-ENCSR984MDV.bestfold.profile.pattern_9.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_0.n_2275.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_0.n_2275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_10.n_44.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_10.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_1.n_409.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_1.n_409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_2.n_399.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_2.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_3.n_369.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_3.n_369.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_4.n_316.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_4.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_5.n_304.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_5.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_6.n_259.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_6.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_7.n_172.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_7.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_8.n_138.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_8.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_9.n_102.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR362NWP.bestfold.profile.pattern_9.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_0.n_1224.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_0.n_1224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_10.n_28.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_10.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_1.n_345.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_1.n_345.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_2.n_114.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_2.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_3.n_101.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_3.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_4.n_75.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_4.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_5.n_72.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_5.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_6.n_56.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_6.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_7.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-HepG2-ENCSR791AGT.bestfold.profile.pattern_9.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_0.n_6743.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_0.n_6743.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_10.n_192.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_10.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_11.n_164.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_11.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_12.n_160.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_12.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_13.n_134.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_13.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_14.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_15.n_94.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_15.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_16.n_82.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_16.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_17.n_67.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_17.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_18.n_50.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_18.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_19.n_37.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_19.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_1.n_3888.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_1.n_3888.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_20.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_21.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_2.n_895.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_2.n_895.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_3.n_564.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_3.n_564.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_4.n_393.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_4.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_5.n_349.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_5.n_349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_6.n_296.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_6.n_296.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_7.n_254.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_7.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_8.n_243.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_8.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_9.n_227.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_9.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_0.n_3410.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_0.n_3410.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_10.n_82.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_10.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_11.n_52.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_11.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_12.n_52.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_12.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_13.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_14.n_36.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_14.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_16.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_1.n_1919.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_1.n_1919.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_2.n_1743.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_2.n_1743.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_3.n_602.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_3.n_602.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_4.n_586.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_4.n_586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_5.n_506.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_5.n_506.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_6.n_406.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_6.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_7.n_301.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_7.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_8.n_227.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_8.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_9.n_179.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR117WTM.bestfold.profile.pattern_9.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_0.n_4068.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_0.n_4068.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_10.n_77.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_10.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_1.n_2129.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_1.n_2129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_2.n_1836.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_2.n_1836.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_3.n_1817.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_3.n_1817.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_4.n_851.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_4.n_851.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_5.n_601.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_5.n_601.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_6.n_469.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_6.n_469.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_7.n_248.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_7.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_8.n_211.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_8.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_9.n_117.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR385AHH.bestfold.profile.pattern_9.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_0.n_5245.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_0.n_5245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_10.n_390.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_10.n_390.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_11.n_342.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_11.n_342.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_12.n_287.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_12.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_13.n_274.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_13.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_14.n_151.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_14.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_15.n_129.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_15.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_16.n_72.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_16.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_17.n_53.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_17.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_18.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_19.n_34.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_19.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_1.n_4460.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_1.n_4460.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_20.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_21.n_28.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_21.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_22.n_23.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_22.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_23.n_20.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_23.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_2.n_3417.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_2.n_3417.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_3.n_1978.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_3.n_1978.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_4.n_1231.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_4.n_1231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_5.n_529.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_5.n_529.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_6.n_523.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_6.n_523.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_7.n_484.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_7.n_484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_8.n_440.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_8.n_440.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_9.n_405.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-K562-ENCSR695EQB.bestfold.profile.pattern_9.n_405.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_0.n_2477.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_0.n_2477.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_10.n_90.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_10.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_11.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_1.n_1989.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_1.n_1989.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_2.n_1832.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_2.n_1832.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_3.n_1504.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_3.n_1504.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_4.n_1296.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_4.n_1296.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_5.n_964.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_5.n_964.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_6.n_705.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_6.n_705.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_7.n_328.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_7.n_328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_8.n_162.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_8.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZNF24/ZNF24-201-vs-ZNF24-MCF-7-ENCSR503VTG.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_0.n_1282.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_0.n_1282.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_1.n_1150.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_1.n_1150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_2.n_284.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_2.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_3.n_96.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_3.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_4.n_84.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_4.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_6.n_73.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_6.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_7.n_48.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_7.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_8.n_37.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_8.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ZNF26-HEK399-ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_0.n_237.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_0.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_11.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_13.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_1.n_221.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_1.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_2.n_212.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_2.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_3.n_198.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_3.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_4.n_195.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_4.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_5.n_175.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_5.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_6.n_76.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_6.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_7.n_62.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_7.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_8.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all/ZNF20/ZNF20-201-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_9.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_0.n_505.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_0.n_505.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_1.n_244.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_1.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_2.n_113.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_2.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_3.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_4.n_75.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_4.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_5.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-HEK293-ENCSR679KXF.bestfold.profile.pattern_6.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_0.n_676.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_0.n_676.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_10.n_55.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_10.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_11.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_12.n_47.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_12.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_13.n_36.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_13.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_1.n_485.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_1.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_2.n_149.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_2.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_3.n_141.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_3.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_4.n_107.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_4.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_7.n_73.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_7.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_8.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_9.n_56.PWM.meme motif-alignments-all-vs-all/ZNF23/ZNF23-201-vs-ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_9.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_0.n_539.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_0.n_539.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_1.n_400.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_1.n_400.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_2.n_293.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_2.n_293.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_3.n_229.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_3.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_4.n_165.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_4.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_5.n_52.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_5.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-ZNF37A-HEK450-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_0.n_13898.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_0.n_13898.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_11.n_48.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_11.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_12.n_46.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_12.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_13.n_43.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_13.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_14.n_32.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_14.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_16.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_1.n_7267.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_1.n_7267.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_2.n_600.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_2.n_600.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_3.n_384.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_3.n_384.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_4.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_5.n_170.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_5.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_6.n_104.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_6.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_7.n_94.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_7.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_8.n_81.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_8.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_9.n_80.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK293-ENCSR242BGR.bestfold.profile.pattern_9.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_23.n_147.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_23.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_26.n_139.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_26.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_55.n_41.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_55.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_56.n_40.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_56.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_58.n_29.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_58.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_59.n_25.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_59.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HEK598-Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_0.n_12692.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_0.n_12692.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_10.n_178.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_10.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_11.n_149.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_11.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_12.n_147.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_12.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_13.n_129.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_13.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_14.n_122.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_14.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_15.n_119.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_15.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_16.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_17.n_111.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_17.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_18.n_95.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_18.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_19.n_91.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_19.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_1.n_1198.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_1.n_1198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_20.n_71.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_20.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_21.n_69.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_21.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_22.n_61.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_22.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_23.n_56.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_23.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_24.n_49.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_24.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_25.n_31.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_25.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_26.n_20.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_26.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_2.n_725.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_2.n_725.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_3.n_439.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_3.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_4.n_392.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_4.n_392.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_5.n_342.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_5.n_342.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_6.n_230.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_6.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_7.n_210.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_7.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_8.n_207.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_8.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_9.n_182.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-ZNF770-HepG2-ENCSR510GKB.bestfold.profile.pattern_9.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_0.n_1690.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_0.n_1690.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_10.n_173.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_10.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_11.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_12.n_87.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_12.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_13.n_74.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_13.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_14.n_66.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_14.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_15.n_57.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_15.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_16.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_17.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_18.n_26.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_18.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_1.n_1249.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_1.n_1249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_2.n_731.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_2.n_731.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_3.n_621.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_3.n_621.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_4.n_574.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_4.n_574.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_5.n_403.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_5.n_403.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_6.n_306.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_6.n_306.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_7.n_275.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_7.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_8.n_224.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_8.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_9.n_214.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HEK293-ENCSR461ZJT.bestfold.profile.pattern_9.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_0.n_4358.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_0.n_4358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_10.n_454.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_10.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_11.n_303.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_11.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_12.n_288.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_12.n_288.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_13.n_260.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_13.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_14.n_258.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_14.n_258.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_15.n_256.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_15.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_16.n_250.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_16.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_17.n_209.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_17.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_18.n_172.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_18.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_19.n_129.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_19.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_1.n_3883.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_1.n_3883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_20.n_102.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_20.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_21.n_89.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_21.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_22.n_75.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_22.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_23.n_67.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_23.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_24.n_65.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_24.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_25.n_42.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_25.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_26.n_35.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_26.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_27.n_29.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_27.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_28.n_22.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_28.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_2.n_824.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_2.n_824.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_3.n_708.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_3.n_708.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_4.n_675.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_4.n_675.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_5.n_609.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_5.n_609.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_6.n_505.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_6.n_505.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_7.n_480.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_7.n_480.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_8.n_478.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_8.n_478.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_9.n_467.PWM.meme motif-alignments-all-vs-all/ZNF501/ZNF501-201-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_9.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_0.n_601.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_0.n_601.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_10.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_1.n_582.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_1.n_582.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_2.n_310.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_2.n_310.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_4.n_108.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_4.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_5.n_99.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_5.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_6.n_96.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_6.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_7.n_61.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_7.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_8.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_9.n_55.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-GM23338-ENCSR555KFE.bestfold.profile.pattern_9.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_0.n_177.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_0.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_1.n_79.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_1.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_2.n_49.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_2.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_3.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_4.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_5.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_6.n_34.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_6.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_7.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all/ZNF114/ZNF114-201-vs-ZNF114-HEK293-ENCSR985MYI.bestfold.profile.pattern_8.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_0.n_517.PWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_0.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_1.n_361.PWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_1.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_2.n_340.PWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_2.n_340.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_3.n_68.PWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_3.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF112-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all/ZNF112/ZNF112-201-vs-ZNF112-HEK293-ENCSR751PNN.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_0.n_2820.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_0.n_2820.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_10.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_11.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_12.n_27.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_12.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_13.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_14.n_24.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_14.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_15.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_1.n_1485.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_1.n_1485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_2.n_698.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_2.n_698.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_3.n_346.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_3.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_4.n_282.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_4.n_282.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_5.n_123.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_5.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_6.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_7.n_76.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_7.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_8.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_9.n_68.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_9.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_10.n_111.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_10.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_11.n_107.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_11.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_12.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_13.n_83.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_13.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_14.n_50.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_14.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_15.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_16.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_1.n_2649.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_1.n_2649.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_2.n_276.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_2.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_3.n_255.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_3.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_4.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_5.n_200.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_5.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_6.n_195.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_6.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_7.n_168.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_7.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_8.n_158.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_8.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_9.n_128.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_9.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_0.n_2486.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_0.n_2486.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_1.n_246.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_1.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_2.n_166.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_2.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_3.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_4.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-201-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_0.n_2820.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_0.n_2820.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_10.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_11.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_12.n_27.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_12.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_13.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_14.n_24.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_14.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_15.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_1.n_1485.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_1.n_1485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_2.n_698.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_2.n_698.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_3.n_346.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_3.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_4.n_282.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_4.n_282.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_5.n_123.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_5.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_6.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_7.n_76.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_7.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_8.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_9.n_68.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR577KQD.bestfold.profile.pattern_9.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_10.n_111.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_10.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_11.n_107.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_11.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_12.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_13.n_83.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_13.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_14.n_50.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_14.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_15.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_16.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_1.n_2649.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_1.n_2649.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_2.n_276.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_2.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_3.n_255.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_3.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_4.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_5.n_200.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_5.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_6.n_195.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_6.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_7.n_168.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_7.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_8.n_158.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_8.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_9.n_128.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_9.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_0.n_2486.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_0.n_2486.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_1.n_246.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_1.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_2.n_166.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_2.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_3.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_4.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF507/ZNF507-205-vs-ZNF507-MCF-7-ENCSR419ODQ.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ZNF506-HEK498-ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HEK438-ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_0.n_1608.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_0.n_1608.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_10.n_150.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_10.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_11.n_124.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_11.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_12.n_117.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_12.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_13.n_108.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_13.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_14.n_94.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_14.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_15.n_78.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_15.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_16.n_78.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_16.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_17.n_75.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_17.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_18.n_58.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_18.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_19.n_53.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_19.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_1.n_548.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_1.n_548.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_20.n_49.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_20.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_21.n_49.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_21.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_22.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_23.n_27.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_23.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_24.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_25.n_23.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_25.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_2.n_526.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_2.n_526.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_3.n_391.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_3.n_391.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_4.n_383.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_4.n_383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_5.n_305.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_5.n_305.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_6.n_278.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_6.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_7.n_200.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_7.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_8.n_174.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_8.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_9.n_154.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_9.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HEK436-ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_0.n_1205.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_0.n_1205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_10.n_156.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_10.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_11.n_129.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_11.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_12.n_71.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_12.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_13.n_64.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_13.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_14.n_59.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_14.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_15.n_55.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_15.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_16.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_17.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_18.n_25.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_18.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_1.n_1021.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_1.n_1021.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_2.n_901.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_2.n_901.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_3.n_560.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_3.n_560.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_4.n_336.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_4.n_336.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_5.n_289.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_5.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_6.n_279.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_6.n_279.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_7.n_265.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_7.n_265.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_8.n_242.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_8.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_9.n_168.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_9.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_0.n_966.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_0.n_966.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_1.n_540.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_1.n_540.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_2.n_73.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_2.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-HEK293-ENCSR440COG.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_0.n_1746.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_0.n_1746.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_10.n_83.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_10.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_11.n_79.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_11.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_12.n_78.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_12.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_13.n_73.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_13.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_14.n_49.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_14.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_16.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_17.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_1.n_1243.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_1.n_1243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_2.n_907.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_2.n_907.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_3.n_452.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_3.n_452.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_4.n_292.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_4.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_5.n_282.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_5.n_282.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_7.n_149.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_7.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_8.n_116.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_8.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_9.n_95.PWM.meme motif-alignments-all-vs-all/ZNF239/ZNF239-201-vs-ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_9.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_0.n_1792.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_0.n_1792.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_1.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_2.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_3.n_102.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_3.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_4.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_5.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_6.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_7.n_26.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_7.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-GM23338-ENCSR918LRB.bestfold.profile.pattern_8.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK434-Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HEK435-ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_0.n_4644.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_0.n_4644.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_10.n_439.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_10.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_11.n_367.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_11.n_367.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_12.n_356.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_12.n_356.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_13.n_313.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_13.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_14.n_251.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_14.n_251.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_15.n_236.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_15.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_16.n_225.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_16.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_17.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_18.n_40.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_18.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_19.n_39.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_19.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_1.n_3844.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_1.n_3844.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_20.n_28.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_20.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_2.n_3280.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_2.n_3280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_3.n_2131.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_3.n_2131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_4.n_1517.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_4.n_1517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_5.n_1199.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_5.n_1199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_6.n_1014.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_6.n_1014.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_7.n_624.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_7.n_624.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_8.n_571.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_8.n_571.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_9.n_516.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_9.n_516.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_0.n_541.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_0.n_541.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_10.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_11.n_34.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_11.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_12.n_28.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_12.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_13.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_1.n_146.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_1.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_2.n_125.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_2.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_3.n_111.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_3.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_4.n_109.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_4.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_5.n_102.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_5.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_6.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_7.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_8.n_53.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_8.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_9.n_50.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ZNF331-MCF-7-ENCSR860XVO.bestfold.profile.pattern_9.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_0.n_1349.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_0.n_1349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_1.n_1134.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_1.n_1134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_2.n_1030.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_2.n_1030.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_3.n_904.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_3.n_904.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_4.n_453.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_4.n_453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_5.n_388.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_5.n_388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_6.n_203.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_6.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_7.n_143.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_7.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_9.n_70.PWM.meme motif-alignments-all-vs-all/ZNF235/ZNF235-201-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_9.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_0.n_666.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_0.n_666.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_10.n_103.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_10.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_12.n_101.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_12.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_13.n_95.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_13.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_14.n_92.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_14.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_15.n_77.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_15.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_16.n_76.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_16.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_17.n_74.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_17.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_18.n_59.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_18.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_19.n_55.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_19.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_1.n_380.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_1.n_380.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_20.n_39.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_20.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_21.n_35.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_21.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_2.n_375.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_2.n_375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_3.n_266.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_3.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_4.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_5.n_176.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_5.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_6.n_139.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_6.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_7.n_121.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_7.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_8.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF234-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZNF234/ZNF234-201-vs-ZNF234-HepG2-ENCSR800ASH.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_0.n_3391.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_0.n_3391.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_10.n_100.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_10.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_11.n_82.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_11.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_12.n_62.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_12.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_13.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_1.n_1435.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_1.n_1435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_2.n_1066.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_2.n_1066.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_3.n_1043.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_3.n_1043.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_4.n_515.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_4.n_515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_5.n_498.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_5.n_498.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_6.n_441.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_6.n_441.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_7.n_386.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_7.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_8.n_363.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_8.n_363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_9.n_307.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_9.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_0.n_829.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_0.n_829.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_10.n_84.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_10.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_11.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_12.n_46.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_12.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_13.n_40.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_13.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_14.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_1.n_281.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_1.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_2.n_185.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_2.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_3.n_171.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_3.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_5.n_125.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_5.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_6.n_110.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_6.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_7.n_110.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_7.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_8.n_99.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_8.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_9.n_93.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-K562-ENCSR360ECJ.bestfold.profile.pattern_9.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_0.n_895.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_0.n_895.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_10.n_162.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_10.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_11.n_156.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_11.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_12.n_143.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_12.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_13.n_141.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_13.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_14.n_139.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_14.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_15.n_132.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_15.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_16.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_17.n_108.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_17.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_18.n_104.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_18.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_19.n_104.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_19.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_1.n_666.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_1.n_666.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_20.n_102.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_20.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_21.n_98.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_21.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_22.n_97.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_22.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_23.n_87.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_23.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_24.n_66.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_24.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_25.n_62.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_25.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_26.n_54.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_26.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_27.n_23.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_27.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_2.n_481.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_2.n_481.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_3.n_304.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_3.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_4.n_256.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_4.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_5.n_205.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_5.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_6.n_190.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_6.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_7.n_174.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_7.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_8.n_172.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_8.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_9.n_163.PWM.meme motif-alignments-all-vs-all/ZNF232/ZNF232-201-vs-ZNF232-WTC11-ENCSR034IND.bestfold.profile.pattern_9.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_0.n_2769.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_0.n_2769.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_10.n_78.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_10.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_1.n_2285.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_1.n_2285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_2.n_1638.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_2.n_1638.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_3.n_1332.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_3.n_1332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_4.n_877.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_4.n_877.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_5.n_647.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_5.n_647.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_6.n_407.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_6.n_407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_7.n_400.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_7.n_400.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_8.n_222.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_8.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_9.n_145.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-201-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_9.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_0.n_2769.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_0.n_2769.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_10.n_78.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_10.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_1.n_2285.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_1.n_2285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_2.n_1638.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_2.n_1638.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_3.n_1332.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_3.n_1332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_4.n_877.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_4.n_877.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_5.n_647.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_5.n_647.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_6.n_407.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_6.n_407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_7.n_400.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_7.n_400.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_8.n_222.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_8.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFHX3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_9.n_145.PWM.meme motif-alignments-all-vs-all/ZFHX3/ZFHX3-203-vs-ZFHX3-HepG2-ENCSR879RGN.bestfold.profile.pattern_9.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_0.n_2622.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_0.n_2622.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_10.n_80.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_10.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_11.n_49.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_11.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_12.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_1.n_1059.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_1.n_1059.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_2.n_944.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_2.n_944.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_3.n_764.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_3.n_764.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_4.n_745.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_4.n_745.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_5.n_517.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_5.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_6.n_385.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_6.n_385.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_7.n_349.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_7.n_349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_8.n_300.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_8.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_9.n_182.PWM.meme motif-alignments-all-vs-all/ZNF230/ZNF230-201-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_9.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_0.n_5720.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_0.n_5720.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_1.n_541.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_1.n_541.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_2.n_263.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_2.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_3.n_263.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_3.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_4.n_183.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_4.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_5.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_5.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_6.n_82.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_6.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_7.n_62.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_7.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_8.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_8.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-HEK293-ENCSR543KOA.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_0.n_4803.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_0.n_4803.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_10.n_194.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_10.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_11.n_183.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_11.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_12.n_124.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_12.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_13.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_13.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_14.n_79.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_14.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_15.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_15.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_16.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_16.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_17.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_18.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_19.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_1.n_790.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_1.n_790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_20.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_20.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_2.n_685.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_2.n_685.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_3.n_639.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_3.n_639.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_4.n_488.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_4.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_5.n_367.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_5.n_367.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_6.n_359.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_6.n_359.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_7.n_354.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_7.n_354.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_8.n_340.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_8.n_340.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_9.n_210.PWM.meme motif-alignments-all-vs-all/ZBTB12/ZBTB12-201-vs-ZBTB12-K562-ENCSR172OSX.bestfold.profile.pattern_9.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-201-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_1.n_940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_2.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_3.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_6.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_1.n_6100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_2.n_3579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_5.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_6.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_8.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_1.n_1301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_2.n_852.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_1.n_1236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_2.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_3.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_4.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_6.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_7.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_1.n_2042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_22.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_24.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_25.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_2.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_3.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_5.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_7.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_8.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_9.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_1.n_1335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_2.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_3.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_5.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_1.n_722.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_2.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_3.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_5.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB11/ZBTB11-203-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-201-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_1.n_1324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_2.n_947.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_3.n_840.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_4.n_542.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_5.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_6.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_7.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_8.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_10.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_11.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_12.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_13.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_14.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_1.n_1474.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_2.n_1034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_3.n_383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_4.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_5.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_6.n_271.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_7.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_8.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.PWM.meme motif-alignments-all-vs-all/ZBTB10/ZBTB10-202-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_9.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_0.n_8550.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_0.n_8550.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_10.n_711.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_10.n_711.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_11.n_693.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_11.n_693.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_12.n_548.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_12.n_548.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_13.n_538.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_13.n_538.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_14.n_467.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_14.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_15.n_461.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_15.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_16.n_443.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_16.n_443.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_17.n_338.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_17.n_338.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_18.n_244.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_18.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_19.n_227.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_19.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_1.n_3973.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_1.n_3973.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_20.n_212.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_20.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_21.n_177.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_21.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_22.n_168.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_22.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_23.n_126.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_23.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_24.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_24.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_25.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_26.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_26.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_27.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_27.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_2.n_3245.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_2.n_3245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_3.n_2977.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_3.n_2977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_4.n_2063.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_4.n_2063.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_5.n_1802.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_5.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_6.n_1756.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_6.n_1756.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_7.n_1555.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_7.n_1555.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_8.n_1491.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_8.n_1491.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_9.n_997.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_9.n_997.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_0.n_1482.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_0.n_1482.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_10.n_150.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_10.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_11.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_12.n_141.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_12.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_13.n_100.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_13.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_14.n_91.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_14.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_15.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_15.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_16.n_43.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_16.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_18.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_18.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_19.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_1.n_1093.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_1.n_1093.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_20.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_20.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_21.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_22.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_22.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_2.n_1054.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_2.n_1054.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_3.n_991.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_3.n_991.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_4.n_358.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_4.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_5.n_279.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_5.n_279.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_6.n_257.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_6.n_257.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_7.n_249.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_7.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_8.n_232.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_8.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_9.n_218.PWM.meme motif-alignments-all-vs-all/ZBTB17/ZBTB17-201-vs-ZBTB17-K562-ENCSR026KKZ.bestfold.profile.pattern_9.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_0.n_5181.PWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_0.n_5181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_1.n_625.PWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_1.n_625.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_2.n_297.PWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_2.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_3.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_3.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_4.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_5.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_6.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB14/ZBTB14-201-vs-ZBTB14-HepG2-ENCSR532WFC.bestfold.profile.pattern_7.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HEK443-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_0.n_2978.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_0.n_2978.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_10.n_40.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_10.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_1.n_2214.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_1.n_2214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_2.n_1312.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_2.n_1312.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_3.n_468.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_3.n_468.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_4.n_349.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_4.n_349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_5.n_280.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_5.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_6.n_254.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_6.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_7.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_8.n_89.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_8.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_9.n_64.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ZNF343-HepG2-ENCSR938VRO.bestfold.profile.pattern_9.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_10.n_103.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_10.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_11.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_12.n_75.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_12.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_13.n_67.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_13.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_14.n_59.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_14.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_16.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_17.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_18.n_22.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_18.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_19.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_1.n_6835.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_1.n_6835.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_2.n_1140.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_2.n_1140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_3.n_708.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_3.n_708.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_4.n_571.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_4.n_571.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_5.n_525.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_5.n_525.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_6.n_321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_7.n_146.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_7.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_8.n_132.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_8.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_9.n_110.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_9.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_10.n_103.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_10.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_11.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_12.n_75.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_12.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_13.n_67.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_13.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_14.n_59.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_14.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_16.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_17.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_18.n_22.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_18.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_19.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_1.n_6835.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_1.n_6835.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_2.n_1140.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_2.n_1140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_3.n_708.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_3.n_708.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_4.n_571.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_4.n_571.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_5.n_525.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_5.n_525.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_6.n_321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_7.n_146.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_7.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_8.n_132.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_8.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_9.n_110.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_9.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-ZNF341-HEK442-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_0.n_1096.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_0.n_1096.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_10.n_59.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_10.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_13.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_14.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_1.n_199.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_1.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_2.n_172.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_2.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_3.n_141.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_3.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_4.n_120.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_4.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_5.n_112.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_5.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_6.n_90.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_6.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_7.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_8.n_77.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_8.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all/ZNF436/ZNF436-201-vs-ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_9.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF347-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_0.n_533.PWM.meme motif-alignments-all-vs-all/ZNF347/ZNF347-201-vs-ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_0.n_533.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF347-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all/ZNF347/ZNF347-201-vs-ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_1.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF347-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF347/ZNF347-201-vs-ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_0.n_2405.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_0.n_2405.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_10.n_266.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_10.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_11.n_210.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_11.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_12.n_189.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_12.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_13.n_183.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_13.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_14.n_178.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_14.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_15.n_159.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_15.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_16.n_152.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_16.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_17.n_131.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_17.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_18.n_106.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_18.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_19.n_80.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_19.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_1.n_2017.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_1.n_2017.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_20.n_71.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_20.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_21.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_2.n_1796.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_2.n_1796.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_3.n_1151.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_3.n_1151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_4.n_837.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_4.n_837.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_5.n_513.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_5.n_513.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_6.n_462.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_6.n_462.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_7.n_394.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_7.n_394.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_8.n_389.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_8.n_389.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_9.n_383.PWM.meme motif-alignments-all-vs-all/ZNF430/ZNF430-201-vs-ZNF430-HepG2-ENCSR618END.bestfold.profile.pattern_9.n_383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_0.n_3643.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_0.n_3643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_1.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_2.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_3.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ZNF433-HEK469-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_0.n_124.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_0.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_10.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_11.n_21.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_11.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_1.n_121.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_1.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_2.n_114.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_2.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_3.n_96.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_3.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_4.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_6.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_7.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_8.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all/ZNF432/ZNF432-201-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_9.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_0.n_549.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_0.n_549.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_10.n_275.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_10.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_11.n_274.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_11.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_12.n_255.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_12.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_13.n_252.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_13.n_252.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_14.n_247.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_14.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_15.n_239.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_15.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_16.n_225.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_16.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_17.n_208.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_17.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_18.n_202.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_18.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_19.n_189.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_19.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_1.n_442.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_1.n_442.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_20.n_129.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_20.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_21.n_122.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_21.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_22.n_119.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_22.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_23.n_91.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_23.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_24.n_87.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_24.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_25.n_84.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_25.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_26.n_73.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_26.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_27.n_71.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_27.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_28.n_56.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_28.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_29.n_53.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_29.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_2.n_403.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_2.n_403.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_30.n_53.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_30.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_31.n_49.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_31.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_32.n_26.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_32.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_3.n_382.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_3.n_382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_4.n_377.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_4.n_377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_5.n_331.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_5.n_331.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_6.n_322.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_6.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_7.n_313.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_7.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_8.n_298.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_8.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_9.n_281.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-HepG2-ENCSR204ALX.bestfold.profile.pattern_9.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_0.n_1877.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_0.n_1877.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_10.n_135.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_10.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_11.n_124.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_11.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_12.n_123.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_12.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_13.n_118.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_13.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_14.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_15.n_110.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_15.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_16.n_76.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_16.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_17.n_73.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_17.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_18.n_71.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_18.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_19.n_67.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_19.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_1.n_1563.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_1.n_1563.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_20.n_65.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_20.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_21.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_22.n_46.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_22.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_23.n_39.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_23.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_24.n_35.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_24.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_25.n_22.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_25.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_26.n_20.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_26.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_2.n_1261.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_2.n_1261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_3.n_645.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_3.n_645.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_4.n_405.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_4.n_405.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_5.n_360.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_5.n_360.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_6.n_277.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_6.n_277.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_7.n_222.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_7.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_8.n_191.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_8.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_9.n_151.PWM.meme motif-alignments-all-vs-all/ZNF431/ZNF431-201-vs-ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_9.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_10.n_103.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_10.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_11.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_12.n_67.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_12.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_13.n_63.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_13.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_1.n_1237.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_1.n_1237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_2.n_764.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_2.n_764.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_3.n_365.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_3.n_365.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_4.n_348.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_4.n_348.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_5.n_286.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_5.n_286.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_6.n_224.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_6.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_7.n_133.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_7.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_8.n_124.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_8.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_9.n_116.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-201-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_9.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_10.n_103.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_10.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_11.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_12.n_67.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_12.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_13.n_63.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_13.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_1.n_1237.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_1.n_1237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_2.n_764.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_2.n_764.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_3.n_365.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_3.n_365.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_4.n_348.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_4.n_348.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_5.n_286.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_5.n_286.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_6.n_224.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_6.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_7.n_133.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_7.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_8.n_124.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_8.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_9.n_116.PWM.meme motif-alignments-all-vs-all/ZNF800/ZNF800-208-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_9.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_14.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_14.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_14.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_14.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_14.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_14.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_0.n_1586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_10.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_11.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_13.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_14.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_14.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_15.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_16.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_1.n_912.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_2.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_3.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_4.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_5.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_6.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_7.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_8.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-GM12878-ENCSR412YGM.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_0.n_2695.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_10.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_11.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_14.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_15.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_1.n_1879.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_2.n_1316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_3.n_908.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_4.n_603.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_5.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_6.n_526.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_7.n_483.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_8.n_351.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-HepG2-ENCSR422VAG.bestfold.profile.pattern_9.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_0.n_5379.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_10.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_11.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_12.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_13.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_14.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_15.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_16.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_17.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_1.n_3263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_2.n_441.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_3.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_5.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_6.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_7.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_8.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR175SZH.bestfold.profile.pattern_9.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_0.n_2044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_1.n_1181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_2.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_3.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_6.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all/ZSCAN29/ZSCAN29-202-vs-ZSCAN29-K562-ENCSR635EXI.bestfold.profile.pattern_9.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_0.n_1408.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_0.n_1408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_11.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_1.n_1336.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_1.n_1336.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_2.n_1083.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_2.n_1083.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_3.n_644.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_3.n_644.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_4.n_494.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_4.n_494.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_5.n_351.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_5.n_351.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_6.n_144.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_6.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_7.n_108.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_7.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_8.n_104.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_8.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HEK293-ENCSR365GRX.bestfold.profile.pattern_9.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_0.n_1367.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_0.n_1367.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_10.n_121.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_10.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_11.n_113.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_11.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_12.n_60.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_12.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_1.n_604.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_1.n_604.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_2.n_420.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_2.n_420.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_3.n_412.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_3.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_4.n_409.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_4.n_409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_5.n_348.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_5.n_348.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_6.n_304.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_6.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_7.n_256.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_7.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_8.n_184.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_8.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_9.n_157.PWM.meme motif-alignments-all-vs-all/ZFP37/ZFP37-201-vs-ZFP37-HepG2-ENCSR505LJT.bestfold.profile.pattern_9.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_0.n_1141.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_0.n_1141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_10.n_95.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_10.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_11.n_93.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_11.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_12.n_69.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_12.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_13.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_14.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_1.n_1090.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_1.n_1090.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_2.n_999.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_2.n_999.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_3.n_711.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_3.n_711.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_4.n_551.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_4.n_551.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_5.n_540.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_5.n_540.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_6.n_423.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_6.n_423.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_7.n_365.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_7.n_365.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_8.n_227.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_8.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_9.n_114.PWM.meme motif-alignments-all-vs-all/ZNF33B/ZNF33B-201-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_9.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_10.n_116.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_10.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_11.n_106.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_11.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_12.n_105.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_12.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_13.n_77.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_13.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_14.n_72.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_14.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_15.n_68.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_15.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_16.n_66.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_16.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_17.n_65.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_17.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_18.n_56.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_18.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_19.n_56.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_19.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_1.n_454.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_1.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_20.n_49.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_20.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_21.n_47.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_21.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_22.n_46.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_22.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_23.n_43.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_23.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_24.n_41.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_24.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_25.n_41.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_25.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_26.n_41.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_26.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_27.n_32.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_27.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_2.n_270.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_2.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_3.n_259.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_3.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_4.n_247.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_4.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_5.n_246.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_5.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_6.n_218.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_6.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_7.n_189.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_7.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_8.n_157.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_8.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_9.n_130.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_9.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HEK439-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_10.n_116.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_10.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_11.n_106.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_11.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_12.n_105.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_12.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_13.n_77.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_13.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_14.n_72.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_14.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_15.n_68.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_15.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_16.n_66.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_16.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_17.n_65.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_17.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_18.n_56.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_18.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_19.n_56.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_19.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_1.n_454.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_1.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_20.n_49.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_20.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_21.n_47.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_21.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_22.n_46.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_22.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_23.n_43.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_23.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_24.n_41.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_24.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_25.n_41.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_25.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_26.n_41.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_26.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_27.n_32.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_27.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_2.n_270.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_2.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_3.n_259.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_3.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_4.n_247.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_4.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_5.n_246.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_5.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_6.n_218.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_6.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_7.n_189.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_7.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_8.n_157.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_8.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_9.n_130.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_9.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_0.n_13953.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_0.n_13953.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_10.n_59.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_10.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_11.n_49.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_11.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_12.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_1.n_2096.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_1.n_2096.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_2.n_1363.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_2.n_1363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_3.n_1268.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_3.n_1268.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_4.n_1142.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_4.n_1142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_5.n_544.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_5.n_544.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_6.n_412.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_6.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_7.n_308.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_7.n_308.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_8.n_144.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_8.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF865-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_9.n_110.PWM.meme motif-alignments-all-vs-all/ZNF865/ZNF865-201-vs-ZNF865-HepG2-ENCSR891KPP.bestfold.profile.pattern_9.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_0.n_298.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_0.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_10.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_11.n_71.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_11.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_12.n_67.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_12.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_13.n_58.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_13.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_14.n_58.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_14.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_15.n_48.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_15.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_17.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_18.n_22.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_18.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_1.n_234.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_1.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_2.n_205.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_2.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_3.n_134.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_3.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_4.n_115.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_4.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_5.n_109.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_5.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_6.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_7.n_85.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_7.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_8.n_83.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_8.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF850-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_9.n_82.PWM.meme motif-alignments-all-vs-all/ZNF850/ZNF850-202-vs-ZNF850-HepG2-ENCSR756CJS.bestfold.profile.pattern_9.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_0.n_2392.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_0.n_2392.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_10.n_181.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_10.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_11.n_78.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_11.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_12.n_57.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_12.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_13.n_51.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_13.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_14.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_15.n_29.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_15.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_16.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_1.n_2283.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_1.n_2283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_2.n_1651.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_2.n_1651.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_3.n_1468.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_3.n_1468.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_4.n_1073.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_4.n_1073.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_5.n_834.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_5.n_834.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_6.n_815.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_6.n_815.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_7.n_697.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_7.n_697.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_8.n_578.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_8.n_578.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_9.n_294.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-GM12878-ENCSR207PFI.bestfold.profile.pattern_9.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_0.n_1783.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_0.n_1783.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_10.n_109.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_10.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_11.n_71.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_11.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_12.n_58.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_12.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_13.n_53.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_13.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_14.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_16.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_1.n_704.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_1.n_704.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_2.n_413.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_2.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_3.n_319.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_3.n_319.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_4.n_314.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_4.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_5.n_206.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_5.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_6.n_197.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_6.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_7.n_183.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_7.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_8.n_152.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_8.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_9.n_125.PWM.meme motif-alignments-all-vs-all/ZBED1/ZBED1-201-vs-ZBED1-K562-ENCSR286PCG.bestfold.profile.pattern_9.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_0.n_232.PWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_0.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_1.n_187.PWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_1.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_2.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_3.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_4.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZMAT5/ZMAT5-202-vs-ZMAT5-HepG2-ENCSR215XSZ.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_0.n_397.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_0.n_397.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_1.n_274.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_1.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_2.n_138.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_2.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_3.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_4.n_25.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_4.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-201-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_5.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_0.n_397.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_0.n_397.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_1.n_274.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_1.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_2.n_138.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_2.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_3.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_4.n_25.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_4.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZMAT4-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all/ZMAT4/ZMAT4-202-vs-ZMAT4-WTC11-ENCSR807VQT.bestfold.profile.pattern_5.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_10.n_50.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_10.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_11.n_46.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_11.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_12.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_13.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_14.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_1.n_699.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_1.n_699.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_2.n_666.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_2.n_666.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_4.n_401.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_4.n_401.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_5.n_316.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_5.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_6.n_273.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_6.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_7.n_271.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_7.n_271.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_8.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_10.n_348.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_10.n_348.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_11.n_314.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_11.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_12.n_300.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_12.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_13.n_220.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_13.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_14.n_219.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_14.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_15.n_215.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_15.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_16.n_215.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_16.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_17.n_189.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_17.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_18.n_184.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_18.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_19.n_132.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_19.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_1.n_2735.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_1.n_2735.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_20.n_83.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_20.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_21.n_79.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_21.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_22.n_78.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_22.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_23.n_51.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_23.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_24.n_43.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_24.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_25.n_29.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_25.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_26.n_28.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_26.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_27.n_28.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_27.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_28.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_28.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_2.n_1038.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_2.n_1038.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_3.n_512.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_3.n_512.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_4.n_461.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_4.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_5.n_435.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_5.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_6.n_424.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_6.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_7.n_387.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_7.n_387.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_8.n_384.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_8.n_384.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_9.n_362.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_9.n_362.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HEK578-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_10.n_50.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_10.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_11.n_46.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_11.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_12.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_13.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_14.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_1.n_699.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_1.n_699.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_2.n_666.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_2.n_666.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_3.n_511.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_3.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_4.n_401.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_4.n_401.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_5.n_316.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_5.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_6.n_273.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_6.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_7.n_271.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_7.n_271.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_8.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_10.n_348.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_10.n_348.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_11.n_314.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_11.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_12.n_300.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_12.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_13.n_220.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_13.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_14.n_219.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_14.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_15.n_215.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_15.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_16.n_215.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_16.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_17.n_189.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_17.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_18.n_184.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_18.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_19.n_132.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_19.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_1.n_2735.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_1.n_2735.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_20.n_83.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_20.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_21.n_79.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_21.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_22.n_78.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_22.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_23.n_51.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_23.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_24.n_43.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_24.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_25.n_29.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_25.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_26.n_28.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_26.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_27.n_28.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_27.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_28.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_28.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_2.n_1038.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_2.n_1038.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_3.n_512.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_3.n_512.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_4.n_461.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_4.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_5.n_435.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_5.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_6.n_424.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_6.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_7.n_387.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_7.n_387.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_8.n_384.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_8.n_384.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_9.n_362.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_9.n_362.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_0.n_3381.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_0.n_3381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_10.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_11.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_12.n_72.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_12.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_13.n_71.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_13.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_14.n_69.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_14.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_15.n_58.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_15.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_17.n_31.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_17.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_18.n_24.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_18.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_1.n_1228.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_1.n_1228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_2.n_1160.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_2.n_1160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_3.n_853.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_3.n_853.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_4.n_780.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_4.n_780.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_5.n_342.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_5.n_342.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_6.n_291.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_6.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_7.n_253.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_7.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_8.n_99.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_8.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF891/ZNF891-201-vs-ZNF891-HepG2-ENCSR020CLV.bestfold.profile.pattern_9.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_0.n_6342.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_0.n_6342.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_10.n_93.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_10.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_11.n_81.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_11.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_12.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_13.n_37.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_13.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_1.n_656.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_1.n_656.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_2.n_564.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_2.n_564.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_3.n_486.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_3.n_486.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_4.n_278.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_4.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_5.n_268.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_5.n_268.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_6.n_222.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_6.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_7.n_135.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_7.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_8.n_115.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_8.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_9.n_108.PWM.meme motif-alignments-all-vs-all/ZNF2/ZNF2-201-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_9.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_0.n_2375.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_0.n_2375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_10.n_152.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_10.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_11.n_141.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_11.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_12.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_13.n_67.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_13.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_14.n_54.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_14.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_16.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_17.n_35.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_17.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_18.n_28.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_18.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_19.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_1.n_489.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_1.n_489.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_20.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_2.n_467.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_2.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_3.n_459.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_3.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_4.n_442.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_4.n_442.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_5.n_437.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_5.n_437.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_6.n_321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_7.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_8.n_173.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_8.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_9.n_159.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_9.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_0.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_10.n_64.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_10.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_11.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_12.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_13.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_14.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_16.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_17.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_1.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_2.n_165.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_2.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_3.n_144.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_3.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_4.n_136.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_4.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_5.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_6.n_118.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_6.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_7.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_8.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_9.n_84.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_9.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_10.n_33.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_10.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_11.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_12.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_13.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_14.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_1.n_122.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_1.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_2.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_3.n_82.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_3.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_4.n_69.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_4.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_6.n_60.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_6.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_7.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_8.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-201-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_9.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_0.n_2375.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_0.n_2375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_10.n_152.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_10.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_11.n_141.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_11.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_12.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_13.n_67.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_13.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_14.n_54.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_14.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_16.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_17.n_35.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_17.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_18.n_28.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_18.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_19.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_1.n_489.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_1.n_489.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_20.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_2.n_467.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_2.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_3.n_459.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_3.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_4.n_442.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_4.n_442.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_5.n_437.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_5.n_437.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_6.n_321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_7.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_8.n_173.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_8.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_9.n_159.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-HepG2-ENCSR182QWU.bestfold.profile.pattern_9.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_0.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_10.n_64.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_10.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_11.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_12.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_13.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_14.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_16.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_17.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_1.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_2.n_165.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_2.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_3.n_144.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_3.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_4.n_136.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_4.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_5.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_6.n_118.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_6.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_7.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_8.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_9.n_84.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR195QFV.bestfold.profile.pattern_9.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_10.n_33.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_10.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_11.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_12.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_13.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_14.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_1.n_122.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_1.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_2.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_3.n_82.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_3.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_4.n_69.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_4.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_6.n_60.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_6.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_7.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_8.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all/ZNF3/ZNF3-202-vs-ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_9.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_0.n_8425.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_0.n_8425.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_1.n_978.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_1.n_978.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_2.n_523.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_2.n_523.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_3.n_317.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_3.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_4.n_251.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_4.n_251.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_5.n_123.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_5.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_6.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_7.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_8.n_37.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_8.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_9.n_37.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK293-ENCSR298QUH.bestfold.profile.pattern_9.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_0.n_351.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_0.n_351.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_10.n_69.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_10.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_11.n_62.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_11.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_12.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_13.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_14.n_54.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_14.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_15.n_46.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_15.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_16.n_46.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_16.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_17.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_18.n_44.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_18.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_19.n_43.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_19.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_1.n_162.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_1.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_20.n_37.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_20.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_21.n_35.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_21.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_22.n_33.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_22.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_23.n_33.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_23.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_24.n_31.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_24.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_25.n_28.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_25.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_26.n_28.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_26.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_27.n_27.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_27.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_28.n_20.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_28.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_2.n_160.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_2.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_3.n_143.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_3.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_4.n_127.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_4.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_5.n_125.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_5.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_6.n_78.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_6.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_7.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_8.n_73.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_8.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-MZF1-HepG2-ENCSR384YOP.bestfold.profile.pattern_9.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_10.n_100.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_10.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_11.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_12.n_95.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_12.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_13.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_14.n_88.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_14.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_15.n_81.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_15.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_16.n_79.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_16.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_17.n_68.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_17.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_18.n_59.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_18.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_19.n_59.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_19.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_1.n_235.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_1.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_20.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_21.n_51.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_21.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_22.n_51.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_22.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_23.n_32.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_23.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_2.n_194.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_2.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_3.n_185.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_3.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_4.n_139.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_4.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_5.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_6.n_118.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_6.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_8.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HEK486-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_10.n_100.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_10.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_11.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_12.n_95.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_12.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_13.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_14.n_88.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_14.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_15.n_81.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_15.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_16.n_79.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_16.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_17.n_68.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_17.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_18.n_59.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_18.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_19.n_59.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_19.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_1.n_235.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_1.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_20.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_21.n_51.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_21.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_22.n_51.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_22.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_23.n_32.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_23.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_2.n_194.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_2.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_3.n_185.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_3.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_4.n_139.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_4.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_5.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_6.n_118.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_6.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_8.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_1.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_2.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_3.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_4.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_5.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_6.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_7.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_10.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_11.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_12.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_13.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_14.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_15.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_1.n_4769.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_2.n_569.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_3.n_453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_4.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_5.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_6.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_7.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_8.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_0.n_1391.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_0.n_1391.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_10.n_198.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_10.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_11.n_110.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_11.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_12.n_95.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_12.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_13.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_13.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_14.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_17.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_18.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_1.n_1210.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_1.n_1210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_2.n_609.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_2.n_609.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_3.n_374.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_3.n_374.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_4.n_347.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_4.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_5.n_336.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_5.n_336.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_6.n_308.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_6.n_308.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_7.n_283.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_7.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_8.n_219.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_8.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_9.n_203.PWM.meme motif-alignments-all-vs-all/ZBTB3/ZBTB3-201-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_9.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_0.n_2746.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_0.n_2746.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_1.n_2101.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_1.n_2101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_2.n_720.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_2.n_720.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_3.n_687.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_3.n_687.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_4.n_257.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_4.n_257.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_5.n_143.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_5.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_6.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_7.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-HepG2-ENCSR175MIA.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_0.n_3604.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_0.n_3604.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_10.n_238.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_10.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_11.n_238.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_11.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_12.n_185.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_12.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_13.n_174.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_13.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_14.n_167.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_14.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_15.n_145.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_15.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_16.n_134.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_16.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_17.n_111.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_17.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_18.n_101.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_18.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_19.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_19.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_1.n_2631.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_1.n_2631.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_20.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_20.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_21.n_44.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_21.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_22.n_33.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_22.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_23.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_24.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_25.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_25.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_2.n_1127.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_2.n_1127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_3.n_837.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_3.n_837.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_4.n_694.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_4.n_694.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_5.n_410.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_5.n_410.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_6.n_357.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_6.n_357.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_7.n_348.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_7.n_348.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_8.n_315.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_8.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_9.n_260.PWM.meme motif-alignments-all-vs-all/ZBTB2/ZBTB2-201-vs-ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_9.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_0.n_12413.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_0.n_12413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_10.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_11.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_12.n_33.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_12.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_13.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_1.n_588.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_1.n_588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_2.n_415.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_2.n_415.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_3.n_280.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_3.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_4.n_253.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_4.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_5.n_148.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_5.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_6.n_141.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_6.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_7.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_7.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_8.n_112.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_8.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_9.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB6/ZBTB6-201-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_9.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_0.n_749.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_0.n_749.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_10.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_10.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_11.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_11.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_1.n_199.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_1.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_2.n_157.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_2.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_3.n_96.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_3.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_4.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_5.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_6.n_71.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_6.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_7.n_65.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_7.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_8.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_9.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR389PWB.bestfold.profile.pattern_9.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_0.n_1088.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_0.n_1088.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_10.n_71.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_10.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_11.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_11.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_12.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_12.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_13.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_14.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_1.n_495.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_1.n_495.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_2.n_429.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_2.n_429.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_3.n_209.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_3.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_4.n_202.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_4.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_5.n_143.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_5.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_6.n_110.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_6.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_7.n_101.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_7.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_8.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_9.n_90.PWM.meme motif-alignments-all-vs-all/ZBTB5/ZBTB5-201-vs-ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_9.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_0.n_706.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_0.n_706.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_10.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_10.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_11.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_12.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_1.n_271.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_1.n_271.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_2.n_156.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_2.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_3.n_118.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_3.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_4.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_4.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_5.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_5.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_6.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_6.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_7.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_8.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_9.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-GM12878-ENCSR691IQB.bestfold.profile.pattern_9.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_0.n_3265.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_0.n_3265.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_10.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_10.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_12.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_12.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_13.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_14.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_1.n_1861.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_1.n_1861.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_2.n_1696.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_2.n_1696.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_3.n_517.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_3.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_4.n_317.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_4.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_5.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_6.n_205.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_6.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_7.n_187.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_7.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_8.n_145.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_8.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_9.n_144.PWM.meme motif-alignments-all-vs-all/ZBTB4/ZBTB4-201-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_9.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_0.n_2870.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_0.n_2870.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_10.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_11.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_12.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_12.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_13.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_14.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_14.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_1.n_1099.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_1.n_1099.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_2.n_715.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_2.n_715.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_3.n_488.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_3.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_4.n_218.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_4.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_5.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_5.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_6.n_133.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_6.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_7.n_122.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_7.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_8.n_115.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_8.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZBTB9/ZBTB9-201-vs-ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_9.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_0.n_1764.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_0.n_1764.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_1.n_343.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_1.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_2.n_191.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_2.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_3.n_176.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_3.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_4.n_171.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_4.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_5.n_151.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_5.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_6.n_141.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_6.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_7.n_104.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_7.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_8.n_89.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_8.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ZNF157-HEK366-ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_0.n_236.PWM.meme motif-alignments-all-vs-all/ZNF155/ZNF155-201-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_0.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_1.n_198.PWM.meme motif-alignments-all-vs-all/ZNF155/ZNF155-201-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_1.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZNF155/ZNF155-201-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_2.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF155/ZNF155-201-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_0.n_6934.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_0.n_6934.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_10.n_77.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_10.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_11.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_12.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_13.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_1.n_5952.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_1.n_5952.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_2.n_2356.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_2.n_2356.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_3.n_1819.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_3.n_1819.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_4.n_441.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_4.n_441.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_5.n_434.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_5.n_434.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_6.n_315.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_6.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_7.n_252.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_7.n_252.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_8.n_222.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_8.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_9.n_215.PWM.meme motif-alignments-all-vs-all/ZNF394/ZNF394-201-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_9.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-ZNF467-HEK485-Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_0.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_10.n_185.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_10.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_11.n_158.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_11.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_12.n_145.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_12.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_13.n_145.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_13.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_14.n_140.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_14.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_15.n_109.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_15.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_16.n_98.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_16.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_17.n_97.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_17.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_18.n_81.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_18.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_19.n_42.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_19.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_1.n_496.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_1.n_496.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_20.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_21.n_26.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_21.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_2.n_462.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_2.n_462.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_3.n_395.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_3.n_395.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_4.n_316.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_4.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_5.n_309.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_5.n_309.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_6.n_304.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_6.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_7.n_280.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_7.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_8.n_246.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_8.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_9.n_204.PWM.meme motif-alignments-all-vs-all/ZNF790/ZNF790-201-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_9.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_1.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_2.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_3.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-201-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_1.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_2.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_3.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF658/ZNF658-207-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_0.n_546.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_0.n_546.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_1.n_532.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_1.n_532.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_2.n_370.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_2.n_370.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_3.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_4.n_68.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_4.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_5.n_54.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_5.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_6.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_7.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HEK293-ENCSR679STZ.bestfold.profile.pattern_8.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_0.n_2732.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_0.n_2732.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_10.n_428.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_10.n_428.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_11.n_252.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_11.n_252.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_12.n_232.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_12.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_13.n_173.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_13.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_14.n_111.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_14.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_15.n_99.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_15.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_16.n_58.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_16.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_17.n_38.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_17.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_18.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_1.n_2626.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_1.n_2626.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_2.n_1959.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_2.n_1959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_3.n_1548.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_3.n_1548.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_4.n_1443.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_4.n_1443.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_5.n_962.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_5.n_962.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_6.n_852.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_6.n_852.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_7.n_547.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_7.n_547.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_8.n_488.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_8.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_9.n_446.PWM.meme motif-alignments-all-vs-all/ZNF792/ZNF792-201-vs-ZNF792-HepG2-ENCSR396SOH.bestfold.profile.pattern_9.n_446.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_0.n_269.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_0.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_1.n_119.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_1.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_2.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_3.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_4.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_6.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_7.n_47.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_7.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF655-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all/ZNF655/ZNF655-201-vs-ZNF655-K562-ENCSR568YNC.bestfold.profile.pattern_8.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_10.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_11.n_62.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_11.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_12.n_38.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_12.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_1.n_3488.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_1.n_3488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_2.n_462.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_2.n_462.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_3.n_384.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_3.n_384.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_4.n_376.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_4.n_376.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_5.n_181.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_5.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_6.n_159.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_6.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_7.n_159.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_7.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_8.n_117.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_8.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-201-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_9.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_10.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_11.n_62.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_11.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_12.n_38.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_12.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_1.n_3488.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_1.n_3488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_2.n_462.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_2.n_462.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_3.n_384.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_3.n_384.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_4.n_376.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_4.n_376.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_5.n_181.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_5.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_6.n_159.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_6.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_7.n_159.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_7.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_8.n_117.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_8.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZNF654/ZNF654-204-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_9.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_0.n_2097.PWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_0.n_2097.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_10.n_93.PWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_10.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_1.n_402.PWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_1.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_2.n_256.PWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_2.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_3.n_240.PWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_3.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_4.n_221.PWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_4.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_5.n_215.PWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_5.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_6.n_204.PWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_6.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_7.n_194.PWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_7.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_8.n_141.PWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_8.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN32-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_9.n_114.PWM.meme motif-alignments-all-vs-all/ZSCAN32/ZSCAN32-202-vs-ZSCAN32-K562-ENCSR870YEN.bestfold.profile.pattern_9.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_0.n_2133.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_0.n_2133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_10.n_358.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_10.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_11.n_355.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_11.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_12.n_347.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_12.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_13.n_327.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_13.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_14.n_322.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_14.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_15.n_318.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_15.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_16.n_231.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_16.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_17.n_190.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_17.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_18.n_175.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_18.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_19.n_145.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_19.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_1.n_1711.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_1.n_1711.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_20.n_144.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_20.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_21.n_123.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_21.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_22.n_117.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_22.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_23.n_83.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_23.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_24.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_24.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_25.n_43.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_25.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_26.n_42.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_26.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_27.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_27.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_28.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_28.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_29.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_29.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_2.n_1367.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_2.n_1367.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_3.n_1056.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_3.n_1056.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_4.n_737.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_4.n_737.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_5.n_585.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_5.n_585.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_6.n_453.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_6.n_453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_7.n_432.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_7.n_432.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_8.n_403.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_8.n_403.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_9.n_360.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_9.n_360.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_0.n_2133.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_0.n_2133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_10.n_358.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_10.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_11.n_355.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_11.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_12.n_347.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_12.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_13.n_327.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_13.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_14.n_322.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_14.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_15.n_318.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_15.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_16.n_231.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_16.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_17.n_190.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_17.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_18.n_175.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_18.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_19.n_145.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_19.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_1.n_1711.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_1.n_1711.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_20.n_144.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_20.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_21.n_123.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_21.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_22.n_117.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_22.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_23.n_83.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_23.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_24.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_24.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_25.n_43.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_25.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_26.n_42.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_26.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_27.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_27.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_28.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_28.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_29.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_29.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_2.n_1367.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_2.n_1367.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_3.n_1056.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_3.n_1056.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_4.n_737.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_4.n_737.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_5.n_585.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_5.n_585.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_6.n_453.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_6.n_453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_7.n_432.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_7.n_432.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_8.n_403.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_8.n_403.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_9.n_360.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_9.n_360.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK633-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HEK634-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_0.n_2133.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_0.n_2133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_10.n_358.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_10.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_11.n_355.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_11.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_12.n_347.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_12.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_13.n_327.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_13.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_14.n_322.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_14.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_15.n_318.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_15.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_16.n_231.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_16.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_17.n_190.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_17.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_18.n_175.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_18.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_19.n_145.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_19.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_1.n_1711.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_1.n_1711.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_20.n_144.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_20.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_21.n_123.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_21.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_22.n_117.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_22.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_23.n_83.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_23.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_24.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_24.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_25.n_43.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_25.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_26.n_42.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_26.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_27.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_27.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_28.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_28.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_29.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_29.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_2.n_1367.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_2.n_1367.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_3.n_1056.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_3.n_1056.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_4.n_737.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_4.n_737.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_5.n_585.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_5.n_585.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_6.n_453.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_6.n_453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_7.n_432.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_7.n_432.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_8.n_403.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_8.n_403.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_9.n_360.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-ZSCAN31-HepG2-ENCSR493VBX.bestfold.profile.pattern_9.n_360.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_0.n_8526.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_0.n_8526.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_10.n_91.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_10.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_11.n_90.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_11.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_12.n_61.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_12.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_13.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_14.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_15.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_16.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_1.n_2097.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_1.n_2097.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_2.n_885.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_2.n_885.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_3.n_500.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_3.n_500.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_4.n_484.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_4.n_484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_5.n_446.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_5.n_446.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_6.n_417.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_6.n_417.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_7.n_292.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_7.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_8.n_232.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_8.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_9.n_178.PWM.meme motif-alignments-all-vs-all/ZNF652/ZNF652-201-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_9.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_0.n_14335.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_0.n_14335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_10.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_11.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_12.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_13.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_14.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_15.n_43.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_15.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_16.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_17.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_1.n_2220.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_1.n_2220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_2.n_1363.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_2.n_1363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_3.n_661.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_3.n_661.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_4.n_643.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_4.n_643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_5.n_428.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_5.n_428.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_6.n_352.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_6.n_352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_7.n_91.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_7.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_8.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_9.n_84.PWM.meme motif-alignments-all-vs-all/ZFY/ZFY-201-vs-ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_9.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_0.n_492.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_0.n_492.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_12.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_1.n_225.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_1.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_2.n_158.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_2.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_3.n_156.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_3.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_4.n_79.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_4.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_5.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_5.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_6.n_73.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_6.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_8.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_8.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all/ZSCAN26/ZSCAN26-201-vs-ZSCAN26-HEK293-ENCSR501NSC.bestfold.profile.pattern_9.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_10.n_492.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_10.n_492.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_11.n_282.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_11.n_282.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_12.n_277.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_12.n_277.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_13.n_228.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_13.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_14.n_218.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_14.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_15.n_208.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_15.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_16.n_156.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_16.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_17.n_105.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_17.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_18.n_85.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_18.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_19.n_70.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_19.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_1.n_3272.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_1.n_3272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_20.n_69.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_20.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_21.n_63.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_21.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_22.n_56.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_22.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_23.n_50.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_23.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_24.n_41.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_24.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_25.n_30.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_25.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_26.n_22.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_26.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_2.n_2348.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_2.n_2348.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_3.n_2007.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_3.n_2007.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_4.n_1633.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_4.n_1633.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_5.n_1203.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_5.n_1203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_6.n_1197.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_6.n_1197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_7.n_931.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_7.n_931.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_8.n_831.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_8.n_831.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_9.n_644.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_9.n_644.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HEK455-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_10.n_492.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_10.n_492.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_11.n_282.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_11.n_282.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_12.n_277.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_12.n_277.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_13.n_228.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_13.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_14.n_218.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_14.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_15.n_208.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_15.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_16.n_156.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_16.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_17.n_105.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_17.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_18.n_85.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_18.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_19.n_70.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_19.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_1.n_3272.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_1.n_3272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_20.n_69.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_20.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_21.n_63.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_21.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_22.n_56.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_22.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_23.n_50.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_23.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_24.n_41.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_24.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_25.n_30.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_25.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_26.n_22.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_26.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_2.n_2348.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_2.n_2348.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_3.n_2007.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_3.n_2007.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_4.n_1633.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_4.n_1633.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_5.n_1203.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_5.n_1203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_6.n_1197.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_6.n_1197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_7.n_931.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_7.n_931.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_8.n_831.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_8.n_831.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_9.n_644.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_9.n_644.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK451-Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_1.n_1465.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_1.n_1465.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_20.n_409.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_20.n_409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_21.n_383.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_21.n_383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_22.n_368.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_22.n_368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_23.n_357.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_23.n_357.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_24.n_347.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_24.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_25.n_329.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_25.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_28.n_247.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_28.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_38.n_33.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_38.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_4.n_1072.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_4.n_1072.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_5.n_857.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_5.n_857.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_6.n_831.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_6.n_831.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_7.n_821.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_7.n_821.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_8.n_820.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_8.n_820.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_9.n_762.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_9.n_762.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_0.n_176.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_0.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_10.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_11.n_37.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_11.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_12.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_1.n_164.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_1.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_2.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_3.n_124.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_3.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_4.n_103.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_4.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HEK453-ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_0.n_54.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_0.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_1.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_2.n_39.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_2.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_3.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ZNF382-HepG2-ENCSR014HQD.bestfold.profile.pattern_7.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_0.n_1246.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_0.n_1246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_1.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_2.n_56.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-HEK293-ENCSR289NSN.bestfold.profile.pattern_2.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_0.n_8249.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_0.n_8249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_10.n_44.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_10.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_1.n_386.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_1.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_2.n_266.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_2.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_3.n_230.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_3.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_4.n_221.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_4.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_5.n_126.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_5.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_6.n_72.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_6.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_7.n_62.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_7.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_8.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_9.n_48.PWM.meme motif-alignments-all-vs-all/ZNF354C/ZNF354C-201-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_9.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_0.n_502.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_0.n_502.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_10.n_141.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_10.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_11.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_12.n_126.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_12.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_13.n_123.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_13.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_14.n_117.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_14.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_15.n_115.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_15.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_16.n_95.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_16.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_17.n_95.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_17.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_18.n_94.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_18.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_19.n_74.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_19.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_1.n_435.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_1.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_20.n_66.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_20.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_21.n_55.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_21.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_22.n_54.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_22.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_23.n_53.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_23.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_24.n_51.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_24.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_2.n_381.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_2.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_3.n_350.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_3.n_350.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_4.n_330.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_4.n_330.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_5.n_295.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_5.n_295.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_6.n_294.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_6.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_7.n_266.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_7.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_8.n_225.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_8.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_9.n_171.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_9.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_0.n_834.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_0.n_834.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_1.n_673.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_1.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_2.n_241.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_2.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_3.n_177.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_3.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_4.n_103.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_4.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_5.n_99.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_5.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_6.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_8.n_48.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_8.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_9.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_10.n_109.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_10.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_11.n_103.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_11.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_12.n_94.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_12.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_13.n_79.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_13.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_14.n_78.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_14.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_15.n_70.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_15.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_16.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_17.n_52.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_17.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_18.n_49.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_18.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_19.n_47.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_19.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_1.n_786.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_1.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_20.n_42.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_20.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_21.n_28.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_21.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_22.n_21.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_22.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_23.n_20.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_23.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_2.n_527.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_2.n_527.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_3.n_276.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_3.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_4.n_212.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_4.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_5.n_155.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_5.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_6.n_129.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_6.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_7.n_129.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_7.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_8.n_127.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_8.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_9.n_121.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-201-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_9.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_0.n_502.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_0.n_502.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_10.n_141.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_10.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_11.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_12.n_126.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_12.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_13.n_123.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_13.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_14.n_117.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_14.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_15.n_115.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_15.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_16.n_95.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_16.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_17.n_95.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_17.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_18.n_94.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_18.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_19.n_74.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_19.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_1.n_435.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_1.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_20.n_66.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_20.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_21.n_55.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_21.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_22.n_54.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_22.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_23.n_53.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_23.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_24.n_51.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_24.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_2.n_381.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_2.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_3.n_350.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_3.n_350.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_4.n_330.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_4.n_330.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_5.n_295.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_5.n_295.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_6.n_294.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_6.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_7.n_266.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_7.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_8.n_225.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_8.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_9.n_171.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-HepG2-ENCSR124QQJ.bestfold.profile.pattern_9.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_0.n_834.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_0.n_834.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_1.n_673.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_1.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_2.n_241.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_2.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_3.n_177.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_3.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_4.n_103.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_4.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_5.n_99.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_5.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_6.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_8.n_48.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_8.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR044IXA.bestfold.profile.pattern_9.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_10.n_109.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_10.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_11.n_103.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_11.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_12.n_94.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_12.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_13.n_79.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_13.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_14.n_78.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_14.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_15.n_70.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_15.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_16.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_17.n_52.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_17.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_18.n_49.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_18.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_19.n_47.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_19.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_1.n_786.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_1.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_20.n_42.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_20.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_21.n_28.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_21.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_22.n_21.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_22.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_23.n_20.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_23.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_2.n_527.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_2.n_527.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_3.n_276.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_3.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_4.n_212.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_4.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_5.n_155.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_5.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_6.n_129.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_6.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_7.n_129.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_7.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_8.n_127.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_8.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_9.n_121.PWM.meme motif-alignments-all-vs-all/ZNF354B/ZNF354B-204-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_9.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_0.n_1042.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_0.n_1042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_10.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_11.n_27.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_11.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_1.n_445.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_1.n_445.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_2.n_291.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_2.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_3.n_119.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_3.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_5.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_6.n_89.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_6.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_7.n_64.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_7.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_8.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all/ZNF570/ZNF570-201-vs-ZNF570-HepG2-ENCSR055ZIA.bestfold.profile.pattern_9.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_0.n_217.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_0.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_1.n_169.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_1.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_2.n_73.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_2.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HEK293-ENCSR421QXA.bestfold.profile.pattern_3.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_0.n_782.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_0.n_782.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_10.n_125.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_10.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_11.n_124.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_11.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_12.n_116.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_12.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_13.n_81.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_13.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_14.n_73.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_14.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_15.n_34.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_15.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_1.n_753.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_1.n_753.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_2.n_742.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_2.n_742.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_3.n_279.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_3.n_279.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_4.n_220.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_4.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_5.n_180.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_5.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_6.n_179.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_6.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_7.n_158.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_7.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_8.n_143.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_8.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_9.n_141.PWM.meme motif-alignments-all-vs-all/ZNF571/ZNF571-201-vs-ZNF571-HepG2-ENCSR697CNF.bestfold.profile.pattern_9.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_0.n_2050.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_0.n_2050.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_1.n_1533.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_1.n_1533.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_2.n_1487.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_2.n_1487.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_3.n_522.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_3.n_522.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_4.n_232.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_4.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_5.n_90.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_5.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_6.n_81.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_6.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_7.n_47.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_7.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_8.n_46.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_8.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF572-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all/ZNF572/ZNF572-201-vs-ZNF572-HepG2-ENCSR663CTC.bestfold.profile.pattern_9.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ZNF573-HEK532-ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK533-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HEK534-Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_0.n_8555.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_0.n_8555.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_10.n_39.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_10.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_11.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_1.n_4959.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_1.n_4959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_2.n_4422.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_2.n_4422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_3.n_4022.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_3.n_4022.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_4.n_695.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_4.n_695.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_5.n_588.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_5.n_588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_6.n_522.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_6.n_522.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_7.n_447.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_7.n_447.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_8.n_391.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_8.n_391.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_9.n_359.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-HepG2-ENCSR886YJI.bestfold.profile.pattern_9.n_359.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_0.n_612.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_0.n_612.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_10.n_148.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_10.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_11.n_128.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_11.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_12.n_92.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_12.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_13.n_77.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_13.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_14.n_73.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_14.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_15.n_71.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_15.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_16.n_65.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_16.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_17.n_50.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_17.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_18.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_19.n_30.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_19.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_1.n_264.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_1.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_2.n_231.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_2.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_3.n_224.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_3.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_4.n_209.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_4.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_5.n_207.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_5.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_6.n_191.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_6.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_7.n_170.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_7.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_8.n_163.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_8.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_9.n_153.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-ZNF574-MCF-7-ENCSR402JAC.bestfold.profile.pattern_9.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_0.n_719.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_0.n_719.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_10.n_86.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_10.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_11.n_70.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_11.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_12.n_52.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_12.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_13.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_14.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_15.n_36.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_15.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_16.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_17.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_18.n_28.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_18.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_19.n_28.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_19.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_1.n_424.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_1.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_20.n_25.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_20.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_21.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_22.n_20.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_22.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_2.n_212.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_2.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_3.n_180.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_3.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_4.n_162.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_4.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_5.n_140.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_5.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_6.n_125.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_6.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_7.n_117.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_7.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_8.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_9.n_91.PWM.meme motif-alignments-all-vs-all/ZNF576/ZNF576-201-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_9.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_0.n_458.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_0.n_458.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_10.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_11.n_37.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_11.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_12.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_14.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_1.n_279.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_1.n_279.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_2.n_96.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_2.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_3.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_4.n_93.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_4.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_5.n_81.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_5.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_6.n_81.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_6.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_7.n_75.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_7.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_8.n_73.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_8.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF577-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_9.n_66.PWM.meme motif-alignments-all-vs-all/ZNF577/ZNF577-201-vs-ZNF577-HepG2-ENCSR436RQS.bestfold.profile.pattern_9.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_0.n_460.PWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_0.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_1.n_120.PWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_1.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_2.n_94.PWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_2.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_3.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_4.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_5.n_42.PWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_5.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF473/ZNF473-201-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_6.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_0.n_2402.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_0.n_2402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_10.n_285.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_10.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_11.n_261.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_11.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_12.n_228.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_12.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_13.n_182.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_13.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_14.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_15.n_36.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_15.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_16.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_1.n_1781.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_1.n_1781.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_2.n_1090.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_2.n_1090.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_3.n_908.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_3.n_908.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_4.n_877.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_4.n_877.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_5.n_864.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_5.n_864.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_6.n_820.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_6.n_820.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_7.n_524.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_7.n_524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_8.n_326.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_8.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_9.n_300.PWM.meme motif-alignments-all-vs-all/ZNF205/ZNF205-201-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_9.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_0.n_2600.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_0.n_2600.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_10.n_113.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_10.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_11.n_113.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_11.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_12.n_97.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_12.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_13.n_83.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_13.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_14.n_74.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_14.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_15.n_35.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_15.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_16.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_17.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_18.n_32.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_18.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_19.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_1.n_471.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_1.n_471.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_2.n_413.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_2.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_3.n_409.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_3.n_409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_4.n_344.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_4.n_344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_5.n_252.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_5.n_252.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_6.n_187.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_6.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_7.n_170.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_7.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_8.n_159.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_8.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_9.n_124.PWM.meme motif-alignments-all-vs-all/ZNF202/ZNF202-201-vs-ZNF202-HEK293-ENCSR996FYT.bestfold.profile.pattern_9.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_3.n_2220.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_3.n_2220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_6.n_571.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_6.n_571.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_8.n_305.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_8.n_305.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_9.n_211.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_9.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_3.n_2220.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_3.n_2220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_6.n_571.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_6.n_571.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_8.n_305.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_8.n_305.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_9.n_211.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_9.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_3.n_2220.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_3.n_2220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_6.n_571.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_6.n_571.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_8.n_305.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_8.n_305.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_9.n_211.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_9.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_0.n_9432.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_10.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_11.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_1.n_2940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_2.n_2521.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_3.n_2220.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_3.n_2220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_4.n_1580.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_5.n_1147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_6.n_571.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_6.n_571.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_7.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_8.n_305.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_8.n_305.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_9.n_211.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK293-ENCSR966ULI.bestfold.profile.pattern_9.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_0.n_11163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_10.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_11.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_12.n_277.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_13.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_14.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_16.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_17.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_18.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_1.n_4241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_2.n_4123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_3.n_3889.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_4.n_2453.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_5.n_1214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_6.n_537.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_7.n_469.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_8.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-HepG2-ENCSR658YLN.bestfold.profile.pattern_9.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_0.n_436.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_10.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_12.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_13.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_14.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_15.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_16.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_17.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_18.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_1.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_2.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_3.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_4.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_5.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_6.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_7.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_8.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-K562-ENCSR549PVK.bestfold.profile.pattern_9.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_0.n_3276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_10.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_11.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_12.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_13.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_14.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_15.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_1.n_2885.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_2.n_1594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_3.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_4.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_5.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_7.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_8.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-PATZ1-SK-N-SH-ENCSR969AIM.bestfold.profile.pattern_9.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-201-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-202-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_0.n_2001.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_1.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_2.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_3.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_4.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_5.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF277-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all/ZNF277/ZNF277-206-vs-ZNF277-K562-ENCSR358PJI.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-201-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-204-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_10.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_11.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_12.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_13.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_14.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_16.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_1.n_1450.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_2.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_3.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_4.n_339.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_5.n_305.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_6.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_7.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_8.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.PWM.meme motif-alignments-all-vs-all/ZNF276/ZNF276-206-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_9.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_0.n_1999.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_0.n_1999.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_10.n_143.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_10.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_11.n_136.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_11.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_12.n_112.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_12.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_13.n_101.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_13.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_14.n_93.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_14.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_15.n_90.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_15.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_16.n_65.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_16.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_17.n_59.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_17.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_18.n_52.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_18.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_19.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_1.n_1370.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_1.n_1370.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_20.n_47.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_20.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_21.n_36.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_21.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_22.n_33.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_22.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_2.n_689.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_2.n_689.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_3.n_594.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_3.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_4.n_514.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_4.n_514.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_5.n_483.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_5.n_483.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_6.n_330.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_6.n_330.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_7.n_273.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_7.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_8.n_167.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_8.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_9.n_146.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-201-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_9.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_0.n_1999.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_0.n_1999.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_10.n_143.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_10.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_11.n_136.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_11.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_12.n_112.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_12.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_13.n_101.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_13.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_14.n_93.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_14.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_15.n_90.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_15.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_16.n_65.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_16.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_17.n_59.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_17.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_18.n_52.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_18.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_19.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_1.n_1370.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_1.n_1370.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_20.n_47.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_20.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_21.n_36.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_21.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_22.n_33.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_22.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_2.n_689.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_2.n_689.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_3.n_594.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_3.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_4.n_514.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_4.n_514.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_5.n_483.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_5.n_483.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_6.n_330.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_6.n_330.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_7.n_273.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_7.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_8.n_167.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_8.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF275-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_9.n_146.PWM.meme motif-alignments-all-vs-all/ZNF275/ZNF275-202-vs-ZNF275-HepG2-ENCSR590BHJ.bestfold.profile.pattern_9.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_0.n_357.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_0.n_357.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_10.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_1.n_191.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_1.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_2.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_3.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_4.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_5.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_6.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_7.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_9.n_22.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM08714-ENCSR000EUI.bestfold.profile.pattern_9.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_0.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_1.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-GM12878-ENCSR000EUK.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_0.n_1809.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_0.n_1809.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_1.n_38.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_1.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-H1-ENCSR000EUN.bestfold.profile.pattern_2.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_0.n_1354.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_0.n_1354.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_1.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HCT116-ENCSR101FJM.bestfold.profile.pattern_2.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR000FCI.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR000FCI.bestfold.profile.pattern_0.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR000FCI.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR000FCI.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_0.n_1309.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_0.n_1309.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_1.n_105.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_1.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_2.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_3.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HEK293-ENCSR178QVJ.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_0.n_372.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_0.n_372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_1.n_223.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_1.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_2.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_3.n_49.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_3.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_4.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_5.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HeLa-S3-ENCSR000EVG.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR000EVR.bestfold.profile.pattern_0.n_532.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR000EVR.bestfold.profile.pattern_0.n_532.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR000EVR.bestfold.profile.pattern_1.n_82.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR000EVR.bestfold.profile.pattern_1.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_0.n_1773.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_0.n_1773.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_10.n_170.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_10.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_11.n_164.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_11.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_12.n_144.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_12.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_13.n_134.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_13.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_14.n_132.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_14.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_15.n_129.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_15.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_16.n_118.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_16.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_17.n_109.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_17.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_18.n_104.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_18.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_19.n_90.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_19.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_1.n_1578.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_1.n_1578.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_20.n_85.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_20.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_21.n_82.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_21.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_22.n_81.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_22.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_23.n_74.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_23.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_24.n_72.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_24.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_25.n_56.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_25.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_26.n_42.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_26.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_27.n_27.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_27.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_28.n_24.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_28.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_2.n_1263.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_2.n_1263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_3.n_1238.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_3.n_1238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_4.n_385.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_4.n_385.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_5.n_324.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_5.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_6.n_319.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_6.n_319.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_7.n_316.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_7.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_8.n_302.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_8.n_302.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_9.n_199.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-HepG2-ENCSR871VNN.bestfold.profile.pattern_9.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_0.n_956.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_0.n_956.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_1.n_344.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_1.n_344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_2.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_3.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EVX.bestfold.profile.pattern_4.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-K562-ENCSR000EWE.bestfold.profile.pattern_0.n_280.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-K562-ENCSR000EWE.bestfold.profile.pattern_0.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_0.n_1114.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_0.n_1114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_1.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_2.n_100.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_2.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all/ZNF274/ZNF274-201-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_3.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_0.n_3169.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_0.n_3169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_10.n_672.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_10.n_672.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_11.n_558.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_11.n_558.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_12.n_546.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_12.n_546.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_13.n_334.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_13.n_334.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_14.n_313.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_14.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_15.n_172.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_15.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_16.n_60.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_16.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_17.n_55.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_17.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_18.n_42.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_18.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_19.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_1.n_2534.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_1.n_2534.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_2.n_2407.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_2.n_2407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_3.n_1983.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_3.n_1983.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_4.n_1962.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_4.n_1962.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_5.n_1899.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_5.n_1899.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_6.n_1204.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_6.n_1204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_7.n_1095.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_7.n_1095.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_8.n_1080.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_8.n_1080.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZXDB-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_9.n_729.PWM.meme motif-alignments-all-vs-all/ZXDB/ZXDB-201-vs-ZXDB-HEK293-ENCSR559IOZ.bestfold.profile.pattern_9.n_729.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_0.n_6265.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_0.n_6265.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_10.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_10.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_11.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_12.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_13.n_36.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_13.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_1.n_4237.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_1.n_4237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_2.n_3975.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_2.n_3975.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_3.n_3694.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_3.n_3694.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_4.n_931.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_4.n_931.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_5.n_630.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_5.n_630.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_6.n_598.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_6.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_7.n_171.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_7.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_8.n_110.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_8.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_9.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_0.n_3505.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_0.n_3505.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_10.n_180.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_10.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_11.n_146.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_11.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_12.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_12.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_13.n_133.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_13.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_14.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_15.n_114.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_15.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_16.n_88.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_16.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_17.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_17.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_18.n_36.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_18.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_19.n_33.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_19.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_1.n_2318.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_1.n_2318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_20.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_20.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_21.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_22.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_22.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_2.n_1446.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_2.n_1446.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_3.n_1326.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_3.n_1326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_4.n_810.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_4.n_810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_5.n_754.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_5.n_754.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_6.n_441.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_6.n_441.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_7.n_347.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_7.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_8.n_297.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_8.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_9.n_236.PWM.meme motif-alignments-all-vs-all/ZBTB20/ZBTB20-201-vs-ZBTB20-HepG2-ENCSR392TWV.bestfold.profile.pattern_9.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_0.n_10300.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_0.n_10300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_1.n_2981.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_1.n_2981.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_2.n_1002.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_2.n_1002.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_3.n_988.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_3.n_988.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_4.n_553.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_4.n_553.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_5.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_5.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_6.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_6.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_7.n_136.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_7.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_8.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_8.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_9.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_9.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_0.n_3180.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_0.n_3180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_10.n_188.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_10.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_11.n_136.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_11.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_12.n_126.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_12.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_14.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_16.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_1.n_2238.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_1.n_2238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_2.n_912.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_2.n_912.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_3.n_906.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_3.n_906.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_4.n_820.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_4.n_820.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_5.n_621.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_5.n_621.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_6.n_468.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_6.n_468.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_7.n_335.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_7.n_335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_8.n_253.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_8.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_9.n_237.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_9.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_0.n_1008.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_0.n_1008.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_10.n_109.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_10.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_11.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_11.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_12.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_12.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_13.n_56.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_13.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_14.n_56.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_14.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_15.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_16.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_17.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_18.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_1.n_961.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_1.n_961.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_2.n_451.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_2.n_451.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_3.n_337.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_3.n_337.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_4.n_270.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_4.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_5.n_269.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_5.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_6.n_228.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_6.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_7.n_163.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_7.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_8.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_8.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_9.n_121.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-201-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_9.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_0.n_10300.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_0.n_10300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_1.n_2981.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_1.n_2981.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_2.n_1002.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_2.n_1002.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_3.n_988.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_3.n_988.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_4.n_553.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_4.n_553.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_5.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_5.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_6.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_6.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_7.n_136.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_7.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_8.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_8.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_9.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HEK293-ENCSR321MSF.bestfold.profile.pattern_9.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_0.n_3180.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_0.n_3180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_10.n_188.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_10.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_11.n_136.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_11.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_12.n_126.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_12.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_14.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_16.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_1.n_2238.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_1.n_2238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_2.n_912.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_2.n_912.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_3.n_906.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_3.n_906.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_4.n_820.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_4.n_820.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_5.n_621.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_5.n_621.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_6.n_468.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_6.n_468.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_7.n_335.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_7.n_335.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_8.n_253.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_8.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_9.n_237.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_9.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_0.n_1008.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_0.n_1008.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_10.n_109.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_10.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_11.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_11.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_12.n_93.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_12.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_13.n_56.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_13.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_14.n_56.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_14.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_15.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_16.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_17.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_18.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_1.n_961.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_1.n_961.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_2.n_451.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_2.n_451.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_3.n_337.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_3.n_337.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_4.n_270.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_4.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_5.n_269.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_5.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_6.n_228.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_6.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_7.n_163.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_7.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_8.n_151.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_8.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_9.n_121.PWM.meme motif-alignments-all-vs-all/ZBTB21/ZBTB21-204-vs-ZBTB21-WTC11-ENCSR962BEI.bestfold.profile.pattern_9.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_0.n_16430.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_0.n_16430.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_1.n_1740.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_1.n_1740.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_2.n_700.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_2.n_700.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_3.n_364.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_3.n_364.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_4.n_317.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_4.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_5.n_107.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_5.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_6.n_99.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_6.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_7.n_97.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_7.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_8.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_8.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK293-ENCSR229DYF.bestfold.profile.pattern_9.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HEK327-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_0.n_3630.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_0.n_3630.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_10.n_154.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_10.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_11.n_144.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_11.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_12.n_103.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_12.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_13.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_13.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_14.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_14.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_15.n_29.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_15.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_16.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_17.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_18.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_18.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_19.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_19.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_1.n_2387.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_1.n_2387.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_20.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_20.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_2.n_1998.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_2.n_1998.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_3.n_543.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_3.n_543.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_4.n_495.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_4.n_495.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_5.n_438.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_5.n_438.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_6.n_385.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_6.n_385.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_7.n_229.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_7.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_8.n_191.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_8.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_9.n_187.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-HepG2-ENCSR184SVO.bestfold.profile.pattern_9.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_0.n_1604.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_0.n_1604.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_10.n_120.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_10.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_11.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_12.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_12.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_13.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_13.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_15.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_16.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_1.n_1124.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_1.n_1124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_2.n_1096.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_2.n_1096.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_3.n_1062.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_3.n_1062.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_4.n_397.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_4.n_397.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_5.n_280.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_5.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_6.n_215.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_6.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_7.n_199.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_7.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_8.n_136.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_8.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_9.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_0.n_470.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_0.n_470.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_1.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_2.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_3.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_4.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_5.n_54.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_5.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_6.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_7.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_8.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB24/ZBTB24-201-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_0.n_2524.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_0.n_2524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_10.n_190.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_10.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_11.n_100.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_11.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_12.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_12.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_13.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_14.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_1.n_1860.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_1.n_1860.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_2.n_1590.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_2.n_1590.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_3.n_1459.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_3.n_1459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_4.n_1263.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_4.n_1263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_5.n_584.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_5.n_584.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_6.n_551.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_6.n_551.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_7.n_416.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_7.n_416.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_8.n_283.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_8.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_9.n_203.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-201-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_9.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_0.n_2524.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_0.n_2524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_10.n_190.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_10.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_11.n_100.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_11.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_12.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_12.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_13.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_14.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_1.n_1860.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_1.n_1860.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_2.n_1590.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_2.n_1590.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_3.n_1459.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_3.n_1459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_4.n_1263.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_4.n_1263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_5.n_584.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_5.n_584.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_6.n_551.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_6.n_551.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_7.n_416.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_7.n_416.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_8.n_283.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_8.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBTB25-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_9.n_203.PWM.meme motif-alignments-all-vs-all/ZBTB25/ZBTB25-203-vs-ZBTB25-HepG2-ENCSR485OYR.bestfold.profile.pattern_9.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_0.n_2195.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_0.n_2195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_1.n_387.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_1.n_387.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_2.n_157.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_2.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_3.n_152.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_3.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_4.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_5.n_76.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_5.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_6.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZNF75A/ZNF75A-210-vs-ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_9.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HEK591-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HEK591-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HEK591-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HEK591-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_0.n_212.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_0.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_10.n_34.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_10.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_11.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_12.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_13.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_1.n_164.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_1.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_2.n_160.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_2.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_3.n_146.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_3.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_4.n_143.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_4.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_5.n_125.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_5.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_6.n_110.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_6.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_7.n_87.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_7.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_8.n_51.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_8.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ZNF75D-HepG2-ENCSR693TYT.bestfold.profile.pattern_9.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_11.n_91.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_11.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_13.n_61.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_13.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_14.n_61.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_14.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_16.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_18.n_43.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_18.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_246.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_20.n_39.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_20.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_21.n_35.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_21.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_22.n_32.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_22.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_24.n_30.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_24.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_201.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_165.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_119.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_112.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_108.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_105.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_104.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-ZFP28-HEK332-Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_0.n_2063.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_0.n_2063.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_10.n_366.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_10.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_11.n_237.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_11.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_12.n_226.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_12.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_13.n_96.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_13.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_14.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_14.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_15.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_16.n_51.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_16.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_1.n_1947.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_1.n_1947.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_2.n_1521.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_2.n_1521.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_3.n_1479.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_3.n_1479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_4.n_804.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_4.n_804.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_5.n_795.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_5.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_6.n_597.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_6.n_597.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_7.n_540.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_7.n_540.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_8.n_531.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_8.n_531.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN9-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_9.n_394.PWM.meme motif-alignments-all-vs-all/ZSCAN9/ZSCAN9-201-vs-ZSCAN9-HepG2-ENCSR712FAM.bestfold.profile.pattern_9.n_394.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_0.n_923.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_0.n_923.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_10.n_334.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_10.n_334.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_11.n_318.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_11.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_12.n_296.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_12.n_296.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_13.n_254.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_13.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_14.n_221.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_14.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_15.n_161.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_15.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_16.n_154.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_16.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_17.n_153.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_17.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_18.n_146.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_18.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_19.n_136.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_19.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_1.n_846.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_1.n_846.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_20.n_132.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_20.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_21.n_124.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_21.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_22.n_102.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_22.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_23.n_96.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_23.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_24.n_96.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_24.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_25.n_95.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_25.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_26.n_86.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_26.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_27.n_75.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_27.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_28.n_63.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_28.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_29.n_51.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_29.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_2.n_620.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_2.n_620.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_30.n_50.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_30.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_31.n_26.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_31.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_32.n_25.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_32.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_3.n_522.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_3.n_522.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_4.n_503.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_4.n_503.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_5.n_459.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_5.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_6.n_441.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_6.n_441.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_7.n_435.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_7.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_8.n_427.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_8.n_427.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_9.n_343.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-201-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_9.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_0.n_923.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_0.n_923.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_10.n_334.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_10.n_334.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_11.n_318.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_11.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_12.n_296.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_12.n_296.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_13.n_254.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_13.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_14.n_221.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_14.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_15.n_161.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_15.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_16.n_154.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_16.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_17.n_153.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_17.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_18.n_146.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_18.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_19.n_136.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_19.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_1.n_846.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_1.n_846.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_20.n_132.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_20.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_21.n_124.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_21.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_22.n_102.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_22.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_23.n_96.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_23.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_24.n_96.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_24.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_25.n_95.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_25.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_26.n_86.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_26.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_27.n_75.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_27.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_28.n_63.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_28.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_29.n_51.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_29.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_2.n_620.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_2.n_620.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_30.n_50.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_30.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_31.n_26.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_31.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_32.n_25.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_32.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_3.n_522.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_3.n_522.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_4.n_503.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_4.n_503.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_5.n_459.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_5.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_6.n_441.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_6.n_441.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_7.n_435.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_7.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_8.n_427.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_8.n_427.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_9.n_343.PWM.meme motif-alignments-all-vs-all/ZFP90/ZFP90-205-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_9.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_0.n_4941.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_0.n_4941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_10.n_103.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_10.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_11.n_82.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_11.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_12.n_60.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_12.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_13.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_14.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_15.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_16.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_1.n_4505.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_1.n_4505.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_2.n_3752.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_2.n_3752.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_3.n_1848.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_3.n_1848.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_4.n_1471.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_4.n_1471.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_5.n_1179.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_5.n_1179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_6.n_439.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_6.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_7.n_183.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_7.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_8.n_182.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_8.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_9.n_140.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-HepG2-ENCSR678KUJ.bestfold.profile.pattern_9.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_0.n_1667.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_0.n_1667.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_1.n_243.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_1.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_2.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_3.n_130.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_3.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_4.n_126.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_4.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_5.n_109.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_5.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_6.n_103.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_6.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_7.n_85.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_7.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR201DCF.bestfold.profile.pattern_8.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_0.n_5497.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_0.n_5497.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_10.n_68.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_10.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_11.n_55.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_11.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_12.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_1.n_2518.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_1.n_2518.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_2.n_1214.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_2.n_1214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_3.n_385.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_3.n_385.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_4.n_242.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_4.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_5.n_146.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_5.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_6.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_7.n_123.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_7.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_8.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_9.n_69.PWM.meme motif-alignments-all-vs-all/ZFP91/ZFP91-201-vs-ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_9.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_0.n_947.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_0.n_947.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_10.n_43.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_10.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_11.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_12.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_1.n_563.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_1.n_563.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_2.n_430.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_2.n_430.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_3.n_250.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_3.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_4.n_123.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_4.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_5.n_101.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_5.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_6.n_82.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_6.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_7.n_78.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_7.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_8.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK293-ENCSR441UBA.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_0.n_1445.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_0.n_1445.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_10.n_67.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_10.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_11.n_48.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_11.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_12.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_13.n_28.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_13.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_1.n_992.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_1.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_2.n_844.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_2.n_844.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_3.n_831.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_3.n_831.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_4.n_514.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_4.n_514.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_5.n_295.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_5.n_295.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_6.n_289.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_6.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_7.n_149.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_7.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_8.n_117.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_8.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-RBAK-HepG2-ENCSR144NTH.bestfold.profile.pattern_9.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_0.n_18248.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_0.n_18248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_10.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_10.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_1.n_1239.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_1.n_1239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_2.n_671.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_2.n_671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_3.n_526.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_3.n_526.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_4.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_5.n_298.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_5.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_6.n_178.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_6.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_7.n_149.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_7.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_8.n_90.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_8.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZSCAN4/ZSCAN4-201-vs-ZSCAN4-HEK293-ENCSR211GNP.bestfold.profile.pattern_9.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_0.n_16057.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_0.n_16057.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_10.n_96.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_10.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_11.n_95.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_11.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_12.n_91.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_12.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_13.n_78.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_13.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_14.n_65.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_14.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_15.n_62.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_15.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_16.n_53.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_16.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_17.n_41.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_17.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_19.n_40.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_19.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_1.n_638.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_1.n_638.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_20.n_39.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_20.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_21.n_23.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_21.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_2.n_608.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_2.n_608.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_3.n_498.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_3.n_498.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_4.n_474.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_4.n_474.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_5.n_469.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_5.n_469.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_6.n_424.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_6.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_7.n_294.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_7.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_8.n_223.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_8.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_9.n_212.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK293-ENCSR919CZU.bestfold.profile.pattern_9.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_10.n_386.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_10.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_11.n_372.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_11.n_372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_12.n_345.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_12.n_345.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_13.n_341.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_13.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_14.n_327.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_14.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_15.n_322.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_15.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_16.n_318.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_16.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_17.n_318.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_17.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_18.n_312.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_18.n_312.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_19.n_301.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_19.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_1.n_1832.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_1.n_1832.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_20.n_294.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_20.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_21.n_292.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_21.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_22.n_282.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_22.n_282.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_23.n_272.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_23.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_24.n_254.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_24.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_25.n_254.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_25.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_26.n_240.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_26.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_27.n_236.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_27.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_28.n_232.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_28.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_29.n_226.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_29.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_2.n_930.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_2.n_930.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_30.n_206.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_30.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_31.n_197.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_31.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_32.n_193.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_32.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_33.n_193.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_33.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_34.n_191.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_34.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_35.n_175.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_35.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_36.n_171.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_36.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_37.n_168.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_37.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_38.n_163.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_38.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_39.n_157.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_39.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_3.n_883.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_3.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_40.n_156.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_40.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_41.n_149.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_41.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_42.n_136.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_42.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_43.n_135.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_43.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_44.n_109.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_44.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_45.n_98.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_45.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_4.n_830.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_4.n_830.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_5.n_521.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_5.n_521.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_6.n_435.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_6.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_7.n_435.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_7.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_8.n_435.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_8.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_9.n_390.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_9.n_390.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_0.n_120.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_0.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_10.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_11.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_1.n_116.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_1.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_2.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_3.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_4.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_5.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_6.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_7.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_8.n_40.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_8.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-K562-ENCSR279OXE.bestfold.profile.pattern_9.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_1.n_1705.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_1.n_1705.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_2.n_511.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_2.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_3.n_230.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_3.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_4.n_107.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_4.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_5.n_82.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_5.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_6.n_56.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_6.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_7.n_47.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_7.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFP30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all/ZFP30/ZFP30-201-vs-ZFP30-SK-N-SH-ENCSR376QPI.bestfold.profile.pattern_8.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_0.n_358.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_0.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_10.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_11.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_1.n_108.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_1.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_2.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_3.n_100.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_3.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_4.n_91.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_4.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_5.n_90.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_5.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_6.n_71.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_6.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_7.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_8.n_43.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_8.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF720-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_9.n_37.PWM.meme motif-alignments-all-vs-all/ZNF720/ZNF720-203-vs-ZNF720-HepG2-ENCSR643XPG.bestfold.profile.pattern_9.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_0.n_3278.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_0.n_3278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_10.n_291.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_10.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_11.n_255.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_11.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_12.n_236.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_12.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_13.n_174.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_13.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_14.n_170.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_14.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_15.n_146.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_15.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_16.n_125.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_16.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_17.n_110.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_17.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_18.n_99.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_18.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_19.n_91.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_19.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_1.n_2292.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_1.n_2292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_20.n_57.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_20.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_21.n_47.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_21.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_22.n_40.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_22.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_23.n_37.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_23.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_24.n_32.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_24.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_25.n_26.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_25.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_2.n_1250.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_2.n_1250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_3.n_1213.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_3.n_1213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_4.n_882.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_4.n_882.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_5.n_758.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_5.n_758.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_6.n_551.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_6.n_551.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_7.n_472.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_7.n_472.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_8.n_369.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_8.n_369.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_9.n_322.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HEK293-ENCSR668HOP.bestfold.profile.pattern_9.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_0.n_3814.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_0.n_3814.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_10.n_340.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_10.n_340.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_11.n_303.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_11.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_12.n_280.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_12.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_13.n_273.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_13.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_14.n_263.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_14.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_15.n_215.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_15.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_16.n_205.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_16.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_17.n_167.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_17.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_18.n_129.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_18.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_19.n_104.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_19.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_1.n_1564.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_1.n_1564.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_20.n_100.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_20.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_21.n_72.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_21.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_22.n_29.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_22.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_23.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_24.n_28.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_24.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_25.n_22.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_25.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_2.n_1347.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_2.n_1347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_3.n_712.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_3.n_712.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_4.n_683.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_4.n_683.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_5.n_561.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_5.n_561.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_6.n_470.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_6.n_470.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_7.n_433.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_7.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_8.n_413.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_8.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF580-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_9.n_406.PWM.meme motif-alignments-all-vs-all/ZNF580/ZNF580-201-vs-ZNF580-HepG2-ENCSR173CTF.bestfold.profile.pattern_9.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_10.n_215.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_10.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_11.n_210.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_11.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_12.n_203.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_12.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_13.n_189.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_13.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_14.n_99.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_14.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_15.n_82.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_15.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_16.n_76.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_16.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_17.n_75.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_17.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_18.n_66.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_18.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_19.n_61.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_19.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_1.n_814.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_1.n_814.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_22.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_23.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_24.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_25.n_21.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_25.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_2.n_407.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_2.n_407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_3.n_379.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_3.n_379.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_4.n_350.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_4.n_350.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_5.n_309.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_5.n_309.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_6.n_286.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_6.n_286.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_7.n_248.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_7.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_8.n_231.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_8.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_9.n_228.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-201-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_9.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_10.n_215.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_10.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_11.n_210.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_11.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_12.n_203.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_12.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_13.n_189.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_13.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_14.n_99.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_14.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_15.n_82.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_15.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_16.n_76.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_16.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_17.n_75.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_17.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_18.n_66.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_18.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_19.n_61.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_19.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_1.n_814.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_1.n_814.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_22.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_23.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_24.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_25.n_21.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_25.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_2.n_407.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_2.n_407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_3.n_379.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_3.n_379.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_4.n_350.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_4.n_350.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_5.n_309.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_5.n_309.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_6.n_286.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_6.n_286.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_7.n_248.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_7.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_8.n_231.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_8.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_9.n_228.PWM.meme motif-alignments-all-vs-all/ZNF583/ZNF583-207-vs-ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_9.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.PWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_0.n_2952.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_0.n_2952.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_10.n_250.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_10.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_11.n_214.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_11.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_12.n_189.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_12.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_13.n_163.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_13.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_14.n_147.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_14.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_15.n_140.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_15.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_16.n_133.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_16.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_17.n_72.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_17.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_18.n_61.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_18.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_19.n_60.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_19.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_1.n_1539.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_1.n_1539.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_20.n_55.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_20.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_21.n_47.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_21.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_22.n_36.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_22.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_23.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_24.n_22.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_24.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_2.n_1524.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_2.n_1524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_3.n_982.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_3.n_982.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_4.n_686.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_4.n_686.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_5.n_433.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_5.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_6.n_427.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_6.n_427.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_7.n_418.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_7.n_418.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_8.n_364.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_8.n_364.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_9.n_320.PWM.meme motif-alignments-all-vs-all/ZNF584/ZNF584-201-vs-ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_9.n_320.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_11.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_13.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_14.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_16.n_48.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_16.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_17.n_48.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_17.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_18.n_44.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_18.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_19.n_43.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_19.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_20.n_43.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_20.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_21.n_42.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_21.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_22.n_42.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_22.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_23.n_41.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_23.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_24.n_41.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_24.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_25.n_40.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_25.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_26.n_36.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_26.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_27.n_34.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_27.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_28.n_34.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_28.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_29.n_34.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_29.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_2.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_30.n_33.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_30.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_31.n_31.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_31.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_32.n_29.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_32.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_33.n_29.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_33.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_34.n_28.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_34.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_35.n_27.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_35.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_36.n_27.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_36.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_37.n_26.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_37.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_38.n_26.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_38.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_39.n_25.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_39.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_3.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_40.n_24.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_40.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_41.n_22.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_41.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_42.n_21.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_42.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_43.n_20.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_43.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_4.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_5.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-HEK539-Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_0.n_391.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_0.n_391.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_10.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_11.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_12.n_38.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_12.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_13.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_14.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_1.n_116.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_1.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_2.n_106.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_2.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_3.n_101.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_3.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_4.n_72.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_4.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_5.n_71.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_5.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_6.n_71.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_6.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_7.n_68.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_7.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_8.n_47.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_8.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_9.n_44.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-ZNF586-K562-ENCSR236JZN.bestfold.profile.pattern_9.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_0.n_1279.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_0.n_1279.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_11.n_104.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_11.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_12.n_104.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_12.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_13.n_86.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_13.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_14.n_79.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_14.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_15.n_43.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_15.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_16.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_17.n_33.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_17.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_1.n_1161.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_1.n_1161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_2.n_1145.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_2.n_1145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_3.n_556.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_3.n_556.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_4.n_401.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_4.n_401.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_5.n_392.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_5.n_392.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_6.n_312.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_6.n_312.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_7.n_218.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_7.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_8.n_213.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_8.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_9.n_187.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-HepG2-ENCSR827ZGB.bestfold.profile.pattern_9.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_0.n_6261.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_0.n_6261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_10.n_254.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_10.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_11.n_172.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_11.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_12.n_133.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_12.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_13.n_130.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_13.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_14.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_15.n_72.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_15.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_16.n_66.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_16.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_17.n_62.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_17.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_18.n_58.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_18.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_19.n_53.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_19.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_1.n_2226.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_1.n_2226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_20.n_44.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_20.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_21.n_37.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_21.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_22.n_29.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_22.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_23.n_24.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_23.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_24.n_22.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_24.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_25.n_21.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_25.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_2.n_1711.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_2.n_1711.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_3.n_1194.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_3.n_1194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_4.n_883.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_4.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_5.n_839.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_5.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_6.n_718.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_6.n_718.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_7.n_687.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_7.n_687.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_8.n_462.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_8.n_462.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_9.n_270.PWM.meme motif-alignments-all-vs-all/ZNF589/ZNF589-201-vs-ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_9.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-201-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-213/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-213-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-215/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-215-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_0.n_541.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_1.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_2.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_3.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_4.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_5.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_6.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_7.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_8.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZFAT-216/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZFAT/ZFAT-216-vs-ZFAT-HepG2-ENCSR409DYM.bestfold.profile.pattern_9.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ZNF611-HEK546-ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_0.n_3660.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_0.n_3660.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_10.n_71.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_10.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_11.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_12.n_65.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_12.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_13.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_14.n_29.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_14.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_1.n_573.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_1.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_2.n_318.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_2.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_3.n_286.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_3.n_286.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_4.n_217.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_4.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_5.n_167.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_5.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_6.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_7.n_100.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_7.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_8.n_98.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_8.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_9.n_93.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK293-ENCSR691TXI.bestfold.profile.pattern_9.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_13.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_14.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_16.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_17.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_18.n_28.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_18.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_19.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_20.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_7.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_8.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_9.n_50.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-ZNF610-HEK544-Hughes_GR_models_ZNF610.bestfold.profile.pattern_9.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_45.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_0.n_526.PWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_0.n_526.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_10.n_123.PWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_10.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_11.n_66.PWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_11.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_12.n_62.PWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_12.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_13.n_59.PWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_13.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_14.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_1.n_390.PWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_1.n_390.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_2.n_369.PWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_2.n_369.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_3.n_347.PWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_3.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_4.n_233.PWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_4.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_5.n_232.PWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_5.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_6.n_225.PWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_6.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_7.n_191.PWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_7.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_8.n_186.PWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_8.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_9.n_157.PWM.meme motif-alignments-all-vs-all/ZNF615/ZNF615-201-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_9.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_0.n_4485.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_0.n_4485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_10.n_323.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_10.n_323.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_11.n_258.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_11.n_258.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_12.n_247.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_12.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_13.n_191.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_13.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_14.n_158.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_14.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_15.n_138.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_15.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_16.n_88.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_16.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_17.n_70.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_17.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_18.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_19.n_36.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_19.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_1.n_3240.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_1.n_3240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_2.n_1947.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_2.n_1947.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_3.n_1946.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_3.n_1946.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_4.n_1288.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_4.n_1288.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_5.n_867.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_5.n_867.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_6.n_784.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_6.n_784.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_7.n_648.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_7.n_648.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_8.n_579.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_8.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_9.n_447.PWM.meme motif-alignments-all-vs-all/ZNF614/ZNF614-201-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_9.n_447.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HEK550-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_0.n_1012.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_0.n_1012.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_10.n_179.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_10.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_11.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_12.n_145.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_12.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_13.n_138.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_13.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_14.n_124.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_14.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_15.n_113.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_15.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_16.n_94.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_16.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_17.n_86.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_17.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_18.n_58.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_18.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_19.n_42.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_19.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_1.n_805.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_1.n_805.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_20.n_39.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_20.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_21.n_33.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_21.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_22.n_22.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_22.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_2.n_720.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_2.n_720.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_3.n_346.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_3.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_4.n_270.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_4.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_5.n_269.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_5.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_6.n_250.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_6.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_7.n_237.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_7.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_8.n_219.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_8.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_9.n_199.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_9.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_0.n_2530.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_0.n_2530.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_10.n_56.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_10.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_11.n_48.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_11.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_1.n_1728.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_1.n_1728.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_2.n_1235.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_2.n_1235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_3.n_415.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_3.n_415.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_4.n_307.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_4.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_5.n_231.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_5.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_6.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_7.n_163.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_7.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_8.n_78.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_8.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_9.n_70.PWM.meme motif-alignments-all-vs-all/ZNF619/ZNF619-201-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_9.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_0.n_7707.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_0.n_7707.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_10.n_86.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_10.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_11.n_78.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_11.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_12.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_13.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_14.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_1.n_1472.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_1.n_1472.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_2.n_1273.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_2.n_1273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_3.n_594.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_3.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_4.n_561.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_4.n_561.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_5.n_424.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_5.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_6.n_411.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_6.n_411.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_7.n_318.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_7.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_8.n_224.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_8.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_9.n_172.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_9.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_0.n_11531.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_0.n_11531.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_10.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_11.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_1.n_9604.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_1.n_9604.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_2.n_4086.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_2.n_4086.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_3.n_249.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_3.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_4.n_233.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_4.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_5.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_6.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_7.n_72.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_7.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_8.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000EUM.bestfold.profile.pattern_0.n_1796.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000EUM.bestfold.profile.pattern_0.n_1796.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_0.n_8731.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_0.n_8731.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_10.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_10.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_1.n_3779.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_1.n_3779.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_2.n_2400.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_2.n_2400.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_3.n_660.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_3.n_660.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_4.n_194.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_4.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_5.n_141.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_5.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_6.n_137.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_6.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_7.n_87.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_7.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_8.n_83.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_8.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_0.n_13583.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_0.n_13583.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_10.n_86.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_10.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_11.n_69.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_11.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_12.n_62.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_12.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_13.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_14.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_15.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_1.n_2622.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_1.n_2622.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_2.n_627.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_2.n_627.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_3.n_457.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_3.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_4.n_362.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_4.n_362.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_5.n_317.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_5.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_6.n_280.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_6.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_7.n_278.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_7.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_8.n_217.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_8.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_9.n_126.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_9.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_0.n_14948.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_0.n_14948.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_10.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_11.n_66.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_11.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_13.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_14.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_15.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_15.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_16.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_17.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_18.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_19.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_1.n_8174.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_1.n_8174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_2.n_4261.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_2.n_4261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_3.n_512.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_3.n_512.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_4.n_291.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_4.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_5.n_239.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_5.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_6.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_7.n_183.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_7.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_0.n_5609.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_0.n_5609.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_10.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_14.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_1.n_4708.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_1.n_4708.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_2.n_2781.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_2.n_2781.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_3.n_892.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_3.n_892.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_4.n_595.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_4.n_595.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_5.n_557.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_5.n_557.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_6.n_495.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_6.n_495.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_7.n_324.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_7.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_8.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_9.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_0.n_6283.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_0.n_6283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_10.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_1.n_412.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_1.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_2.n_386.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_2.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_3.n_281.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_3.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_4.n_106.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_4.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_5.n_76.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_5.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_6.n_68.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_6.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_7.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_8.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_9.n_44.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_9.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_0.n_8778.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_0.n_8778.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_10.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_10.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_1.n_3957.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_1.n_3957.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_2.n_3477.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_2.n_3477.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_3.n_549.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_3.n_549.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_4.n_487.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_4.n_487.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_5.n_235.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_5.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_6.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_7.n_143.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_7.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_8.n_112.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_8.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_9.n_55.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_9.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_0.n_9922.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_0.n_9922.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_10.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_11.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_1.n_2387.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_1.n_2387.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_2.n_1154.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_2.n_1154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_3.n_744.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_3.n_744.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_4.n_343.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_4.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_5.n_320.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_5.n_320.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_6.n_191.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_6.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_7.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_8.n_75.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_8.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_9.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_0.n_8283.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_0.n_8283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_10.n_146.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_10.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_11.n_105.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_11.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_12.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_12.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_13.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_14.n_50.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_14.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_1.n_2779.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_1.n_2779.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_2.n_958.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_2.n_958.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_3.n_574.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_3.n_574.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_4.n_479.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_4.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_5.n_404.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_5.n_404.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_6.n_275.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_6.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_7.n_201.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_7.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_8.n_196.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_8.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_9.n_179.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_9.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_0.n_18250.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_0.n_18250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_10.n_111.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_10.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_11.n_108.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_11.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_12.n_81.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_12.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_13.n_79.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_13.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_14.n_39.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_14.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_15.n_29.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_15.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_1.n_4600.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_1.n_4600.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_2.n_1812.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_2.n_1812.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_3.n_558.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_3.n_558.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_4.n_195.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_4.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_5.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_5.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_6.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_7.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_8.n_123.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_8.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_9.n_121.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_9.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_0.n_5267.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_0.n_5267.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_1.n_391.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_1.n_391.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_2.n_157.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_2.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_3.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_4.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_5.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_0.n_9647.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_0.n_9647.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_10.n_156.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_10.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_11.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_12.n_117.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_12.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_13.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_15.n_41.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_15.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_16.n_29.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_16.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_17.n_26.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_17.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_1.n_7692.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_1.n_7692.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_2.n_6885.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_2.n_6885.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_3.n_4455.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_3.n_4455.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_4.n_2057.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_4.n_2057.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_5.n_1151.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_5.n_1151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_6.n_1051.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_6.n_1051.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_7.n_672.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_7.n_672.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_8.n_355.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_8.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_9.n_181.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_9.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_0.n_10987.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_0.n_10987.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_10.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_1.n_2515.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_1.n_2515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_2.n_2144.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_2.n_2144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_3.n_929.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_3.n_929.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_4.n_677.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_4.n_677.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_5.n_332.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_5.n_332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_6.n_177.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_6.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_7.n_152.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_7.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_8.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_9.n_48.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_9.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_0.n_3895.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_0.n_3895.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_1.n_660.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_1.n_660.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_2.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_0.n_11278.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_0.n_11278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_10.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_1.n_3966.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_1.n_3966.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_2.n_1117.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_2.n_1117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_3.n_1086.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_3.n_1086.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_4.n_470.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_4.n_470.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_5.n_421.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_5.n_421.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_6.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_7.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_8.n_58.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_8.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_9.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_0.n_8724.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_0.n_8724.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_10.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_10.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_11.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_12.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_13.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_1.n_1957.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_1.n_1957.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_2.n_1220.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_2.n_1220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_3.n_494.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_3.n_494.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_4.n_349.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_4.n_349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_5.n_203.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_5.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_6.n_156.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_6.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_7.n_124.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_7.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_8.n_97.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_8.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_9.n_73.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_9.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_0.n_7707.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_0.n_7707.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_10.n_86.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_10.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_11.n_78.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_11.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_12.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_13.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_14.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_1.n_1472.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_1.n_1472.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_2.n_1273.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_2.n_1273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_3.n_594.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_3.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_4.n_561.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_4.n_561.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_5.n_424.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_5.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_6.n_411.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_6.n_411.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_7.n_318.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_7.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_8.n_224.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_8.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-A549-ENCSR000BPM.bestfold.profile.pattern_9.n_172.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-A549-ENCSR000BPM.bestfold.profile.pattern_9.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_0.n_11531.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_0.n_11531.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_10.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_11.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_1.n_9604.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_1.n_9604.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_2.n_4086.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_2.n_4086.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_3.n_249.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_3.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_4.n_233.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_4.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_5.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_6.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_7.n_72.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_7.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_8.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000BNP.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12878-ENCSR000EUM.bestfold.profile.pattern_0.n_1796.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12878-ENCSR000EUM.bestfold.profile.pattern_0.n_1796.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_0.n_8731.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_0.n_8731.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_10.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_10.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_1.n_3779.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_1.n_3779.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_2.n_2400.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_2.n_2400.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_3.n_660.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_3.n_660.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_4.n_194.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_4.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_5.n_141.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_5.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_6.n_137.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_6.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_7.n_87.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_7.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_8.n_83.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_8.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12891-ENCSR000BKJ.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_0.n_13583.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_0.n_13583.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_10.n_86.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_10.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_11.n_69.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_11.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_12.n_62.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_12.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_13.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_14.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_15.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_1.n_2622.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_1.n_2622.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_2.n_627.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_2.n_627.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_3.n_457.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_3.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_4.n_362.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_4.n_362.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_5.n_317.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_5.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_6.n_280.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_6.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_7.n_278.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_7.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_8.n_217.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_8.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_9.n_126.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-GM12892-ENCSR000BLT.bestfold.profile.pattern_9.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_0.n_14948.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_0.n_14948.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_10.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_11.n_66.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_11.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_13.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_14.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_15.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_15.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_16.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_17.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_18.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_19.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_1.n_8174.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_1.n_8174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_2.n_4261.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_2.n_4261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_3.n_512.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_3.n_512.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_4.n_291.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_4.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_5.n_239.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_5.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_6.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_7.n_183.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_7.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-H1-ENCSR000BKD.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-H1-ENCSR000BKD.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_0.n_5609.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_0.n_5609.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_10.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_14.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_1.n_4708.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_1.n_4708.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_2.n_2781.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_2.n_2781.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_3.n_892.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_3.n_892.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_4.n_595.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_4.n_595.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_5.n_557.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_5.n_557.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_6.n_495.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_6.n_495.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_7.n_324.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_7.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_8.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HCT116-ENCSR000BNX.bestfold.profile.pattern_9.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_0.n_6283.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_0.n_6283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_10.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_1.n_412.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_1.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_2.n_386.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_2.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_3.n_281.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_3.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_4.n_106.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_4.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_5.n_76.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_5.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_6.n_68.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_6.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_7.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_8.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_9.n_44.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK293-ENCSR859RAO.bestfold.profile.pattern_9.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_0.n_8778.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_0.n_8778.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_10.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_10.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_1.n_3957.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_1.n_3957.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_2.n_3477.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_2.n_3477.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_3.n_549.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_3.n_549.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_4.n_487.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_4.n_487.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_5.n_235.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_5.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_6.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_7.n_143.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_7.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_8.n_112.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_8.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_9.n_55.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-HepG2-ENCSR000BNT.bestfold.profile.pattern_9.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_0.n_9922.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_0.n_9922.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_10.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_11.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_1.n_2387.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_1.n_2387.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_2.n_1154.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_2.n_1154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_3.n_744.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_3.n_744.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_4.n_343.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_4.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_5.n_320.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_5.n_320.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_6.n_191.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_6.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_7.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_8.n_75.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_8.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-Ishikawa-ENCSR000BSY.bestfold.profile.pattern_9.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_0.n_8283.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_0.n_8283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_10.n_146.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_10.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_11.n_105.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_11.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_12.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_12.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_13.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_14.n_50.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_14.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_1.n_2779.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_1.n_2779.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_2.n_958.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_2.n_958.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_3.n_574.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_3.n_574.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_4.n_479.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_4.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_5.n_404.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_5.n_404.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_6.n_275.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_6.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_7.n_201.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_7.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_8.n_196.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_8.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BKU.bestfold.profile.pattern_9.n_179.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BKU.bestfold.profile.pattern_9.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_0.n_18250.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_0.n_18250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_10.n_111.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_10.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_11.n_108.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_11.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_12.n_81.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_12.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_13.n_79.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_13.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_14.n_39.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_14.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_15.n_29.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_15.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_1.n_4600.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_1.n_4600.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_2.n_1812.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_2.n_1812.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_3.n_558.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_3.n_558.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_4.n_195.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_4.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_5.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_5.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_6.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_7.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_8.n_123.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_8.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000BMH.bestfold.profile.pattern_9.n_121.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000BMH.bestfold.profile.pattern_9.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_0.n_5267.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_0.n_5267.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_1.n_391.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_1.n_391.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_2.n_157.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_2.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_3.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_4.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-K562-ENCSR000EWF.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-K562-ENCSR000EWF.bestfold.profile.pattern_5.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_0.n_9647.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_0.n_9647.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_10.n_156.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_10.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_11.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_12.n_117.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_12.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_13.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_15.n_41.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_15.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_16.n_29.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_16.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_17.n_26.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_17.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_1.n_7692.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_1.n_7692.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_2.n_6885.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_2.n_6885.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_3.n_4455.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_3.n_4455.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_4.n_2057.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_4.n_2057.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_5.n_1151.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_5.n_1151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_6.n_1051.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_6.n_1051.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_7.n_672.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_7.n_672.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_8.n_355.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_8.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR382MOM.bestfold.profile.pattern_9.n_181.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR382MOM.bestfold.profile.pattern_9.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_0.n_10987.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_0.n_10987.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_10.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_1.n_2515.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_1.n_2515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_2.n_2144.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_2.n_2144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_3.n_929.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_3.n_929.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_4.n_677.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_4.n_677.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_5.n_332.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_5.n_332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_6.n_177.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_6.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_7.n_152.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_7.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_8.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_9.n_48.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-liver-ENCSR994YLZ.bestfold.profile.pattern_9.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_0.n_3895.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_0.n_3895.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_1.n_660.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_1.n_660.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-NT2_D1-ENCSR000EXG.bestfold.profile.pattern_2.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_0.n_11278.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_0.n_11278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_10.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_1.n_3966.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_1.n_3966.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_2.n_1117.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_2.n_1117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_3.n_1086.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_3.n_1086.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_4.n_470.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_4.n_470.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_5.n_421.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_5.n_421.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_6.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_7.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_8.n_58.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_8.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BLZ.bestfold.profile.pattern_9.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_0.n_8724.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_0.n_8724.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_10.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_10.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_11.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_12.n_56.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_12.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_13.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_1.n_1957.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_1.n_1957.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_2.n_1220.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_2.n_1220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_3.n_494.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_3.n_494.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_4.n_349.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_4.n_349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_5.n_203.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_5.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_6.n_156.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_6.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_7.n_124.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_7.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_8.n_97.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_8.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_9.n_73.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-YY1-SK-N-SH-ENCSR000BSM.bestfold.profile.pattern_9.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_0.n_8193.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_0.n_8193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_1.n_388.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_1.n_388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_3.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_0.n_1492.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_0.n_1492.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_10.n_133.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_10.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_11.n_128.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_11.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_12.n_127.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_12.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_13.n_112.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_13.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_14.n_99.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_14.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_15.n_84.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_15.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_16.n_73.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_16.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_17.n_59.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_17.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_18.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_1.n_952.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_1.n_952.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_2.n_586.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_2.n_586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_3.n_506.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_3.n_506.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_4.n_468.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_4.n_468.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_5.n_300.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_5.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_6.n_234.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_6.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_7.n_225.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_7.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_8.n_164.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_8.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_9.n_154.PWM.meme motif-alignments-all-vs-all/ZNF34/ZNF34-201-vs-ZNF34-HepG2-ENCSR904JEY.bestfold.profile.pattern_9.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_121.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_100.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_96.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_80.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK444-Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_408.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_394.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_394.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_12.n_354.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_12.n_354.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_13.n_303.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_13.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_14.n_230.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_14.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_15.n_73.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_15.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_16.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_17.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_1210.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_1210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_703.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_703.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_694.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_694.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_591.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_591.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_586.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_578.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_578.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_509.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_509.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_502.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_502.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_449.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_449.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HEK418-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_28.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HEK418-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HEK418-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HEK418-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_0.n_759.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_0.n_759.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_10.n_113.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_10.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_11.n_79.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_11.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_12.n_74.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_12.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_13.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_14.n_59.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_14.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_15.n_51.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_15.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_16.n_40.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_16.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_17.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_1.n_272.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_1.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_2.n_192.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_2.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_3.n_183.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_3.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_4.n_173.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_4.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_5.n_172.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_5.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_6.n_156.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_6.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_7.n_139.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_7.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_8.n_135.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_8.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_9.n_134.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_9.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_0.n_1196.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_0.n_1196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_1.n_1055.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_1.n_1055.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_2.n_309.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_2.n_309.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_3.n_241.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_3.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_4.n_149.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_4.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_5.n_76.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_5.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_6.n_49.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_6.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF668-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF668/ZNF668-201-vs-ZNF668-K562-ENCSR682AAS.bestfold.profile.pattern_8.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_0.n_1039.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_0.n_1039.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_1.n_703.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_1.n_703.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_2.n_247.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_2.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_3.n_122.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_3.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_4.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_5.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_0.n_189.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_0.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_10.n_43.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_10.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_11.n_31.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_11.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_12.n_27.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_12.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_13.n_27.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_13.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_14.n_24.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_14.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_15.n_23.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_15.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_1.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_2.n_75.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_2.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_3.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_5.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_6.n_64.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_6.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_7.n_61.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_7.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_8.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF530/ZNF530-201-vs-ZNF530-HepG2-ENCSR013DKM.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_0.n_132.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_0.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_10.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_11.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_12.n_70.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_12.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_13.n_69.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_13.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_14.n_68.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_14.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_15.n_65.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_15.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_16.n_63.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_16.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_17.n_59.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_17.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_18.n_56.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_18.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_19.n_55.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_19.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_1.n_128.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_1.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_20.n_55.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_20.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_21.n_54.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_21.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_22.n_49.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_22.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_23.n_48.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_23.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_24.n_37.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_24.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_25.n_35.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_25.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_26.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_27.n_33.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_27.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_28.n_30.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_28.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_29.n_28.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_29.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_2.n_126.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_2.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_3.n_114.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_3.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_4.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_5.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_6.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_7.n_101.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_7.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_8.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF532-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_9.n_83.PWM.meme motif-alignments-all-vs-all/ZNF532/ZNF532-201-vs-ZNF532-WTC11-ENCSR444BFV.bestfold.profile.pattern_9.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_0.n_584.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_0.n_584.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_10.n_136.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_10.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_11.n_126.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_11.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_12.n_97.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_12.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_13.n_77.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_13.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_14.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_1.n_364.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_1.n_364.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_2.n_285.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_2.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_3.n_275.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_3.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_4.n_270.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_4.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_5.n_267.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_5.n_267.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_6.n_264.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_6.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_7.n_254.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_7.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_8.n_218.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_8.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_9.n_153.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR401VBM.bestfold.profile.pattern_9.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_0.n_3165.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_0.n_3165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_10.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_11.n_82.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_11.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_12.n_62.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_12.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_13.n_43.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_13.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_1.n_1792.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_1.n_1792.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_2.n_1692.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_2.n_1692.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_3.n_1277.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_3.n_1277.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_4.n_368.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_4.n_368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_5.n_361.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_5.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_6.n_298.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_6.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_7.n_276.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_7.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_8.n_227.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_8.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-HepG2-ENCSR407BEZ.bestfold.profile.pattern_9.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_0.n_1663.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_0.n_1663.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_1.n_1328.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_1.n_1328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_2.n_1079.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_2.n_1079.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_3.n_734.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_3.n_734.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_4.n_626.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_4.n_626.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_5.n_306.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_5.n_306.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_6.n_165.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_6.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_7.n_161.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_7.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_8.n_126.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_8.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX2-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/ZHX2/ZHX2-201-vs-ZHX2-MCF-7-ENCSR876UYH.bestfold.profile.pattern_9.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_0.n_1007.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_0.n_1007.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_10.n_97.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_10.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_11.n_89.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_11.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_12.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_13.n_78.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_13.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_14.n_74.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_14.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_15.n_69.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_15.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_16.n_65.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_16.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_17.n_62.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_17.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_18.n_54.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_18.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_19.n_29.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_19.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_1.n_372.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_1.n_372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_2.n_340.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_2.n_340.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_3.n_301.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_3.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_4.n_213.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_4.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_5.n_178.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_5.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_6.n_168.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_6.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_7.n_165.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_7.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_8.n_138.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_8.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_9.n_115.PWM.meme motif-alignments-all-vs-all/ZHX3/ZHX3-201-vs-ZHX3-HepG2-ENCSR367KYL.bestfold.profile.pattern_9.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_0.n_1850.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_0.n_1850.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_1.n_150.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_1.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_2.n_96.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_2.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_3.n_85.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_3.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_4.n_79.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_4.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_5.n_74.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_5.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_6.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_7.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HeLa-S3-ENCSR887MXT.bestfold.profile.pattern_9.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_0.n_2228.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_0.n_2228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_10.n_209.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_10.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_11.n_208.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_11.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_12.n_192.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_12.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_13.n_162.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_13.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_14.n_55.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_14.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_15.n_26.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_15.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_16.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_1.n_1640.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_1.n_1640.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_2.n_1097.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_2.n_1097.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_3.n_840.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_3.n_840.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_4.n_806.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_4.n_806.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_5.n_650.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_5.n_650.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_6.n_501.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_6.n_501.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_7.n_330.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_7.n_330.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_8.n_273.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_8.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_9.n_220.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-HepG2-ENCSR978DQT.bestfold.profile.pattern_9.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_0.n_735.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_0.n_735.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_10.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_1.n_665.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_1.n_665.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_2.n_581.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_2.n_581.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_3.n_184.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_3.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_4.n_142.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_4.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_5.n_137.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_5.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_6.n_127.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_6.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_7.n_86.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_7.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_8.n_76.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_8.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZHX1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all/ZHX1/ZHX1-201-vs-ZHX1-K562-ENCSR557RVF.bestfold.profile.pattern_9.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_0.n_1661.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_0.n_1661.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_10.n_142.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_10.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_11.n_133.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_11.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_12.n_74.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_12.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_13.n_60.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_13.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_14.n_50.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_14.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_15.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_16.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_17.n_24.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_17.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_1.n_956.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_1.n_956.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_2.n_440.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_2.n_440.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_3.n_348.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_3.n_348.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_4.n_323.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_4.n_323.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_5.n_234.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_5.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_6.n_227.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_6.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_7.n_190.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_7.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_8.n_185.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_8.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_9.n_155.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-HepG2-ENCSR832PID.bestfold.profile.pattern_9.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_0.n_142.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_0.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_1.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_2.n_91.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_2.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_3.n_87.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_3.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_4.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_6.n_49.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_6.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_7.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_8.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR334HSW.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_0.n_2449.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_0.n_2449.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_10.n_50.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_10.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_11.n_28.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_11.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_12.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_13.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_1.n_2284.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_1.n_2284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_2.n_1676.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_2.n_1676.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_3.n_1266.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_3.n_1266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_4.n_771.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_4.n_771.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_5.n_206.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_5.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_6.n_205.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_6.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_7.n_166.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_7.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_8.n_117.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_8.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF318-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_9.n_71.PWM.meme motif-alignments-all-vs-all/ZNF318/ZNF318-201-vs-ZNF318-K562-ENCSR352BJL.bestfold.profile.pattern_9.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK394-Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_0.n_926.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_0.n_926.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_10.n_91.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_10.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_11.n_84.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_11.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_12.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_13.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_14.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_16.n_40.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_16.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_17.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_1.n_405.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_1.n_405.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_2.n_224.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_2.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_3.n_185.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_3.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_4.n_178.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_4.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_5.n_153.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_5.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_6.n_135.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_6.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_7.n_127.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_7.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_8.n_111.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_8.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_9.n_92.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-201-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_9.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_0.n_926.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_0.n_926.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_10.n_91.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_10.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_11.n_84.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_11.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_12.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_13.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_14.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_16.n_40.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_16.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_17.n_23.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_17.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_1.n_405.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_1.n_405.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_2.n_224.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_2.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_3.n_185.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_3.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_4.n_178.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_4.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_5.n_153.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_5.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_6.n_135.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_6.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_7.n_127.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_7.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_8.n_111.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_8.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_9.n_92.PWM.meme motif-alignments-all-vs-all/ZNF101/ZNF101-203-vs-ZNF101-HepG2-ENCSR519QYU.bestfold.profile.pattern_9.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_24.n_185.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_24.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_25.n_182.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_25.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_26.n_177.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_26.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_27.n_173.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_27.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_28.n_168.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_28.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_29.n_160.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_29.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK344-Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_24.n_369.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_24.n_369.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_25.n_342.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_25.n_342.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_26.n_341.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_26.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_27.n_331.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_27.n_331.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_28.n_328.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_28.n_328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_0.n_2033.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_0.n_2033.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_1.n_1643.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_1.n_1643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_2.n_692.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_2.n_692.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_3.n_604.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_3.n_604.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_4.n_499.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_4.n_499.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_5.n_231.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_5.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_6.n_180.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_6.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_7.n_141.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_7.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_8.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_9.n_31.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK293-ENCSR768HOH.bestfold.profile.pattern_9.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-HEK432-Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_0.n_2994.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_0.n_2994.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_10.n_146.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_10.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_11.n_106.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_11.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_12.n_98.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_12.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_13.n_90.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_13.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_14.n_81.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_14.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_15.n_80.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_15.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_16.n_70.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_16.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_17.n_66.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_17.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_18.n_40.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_18.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_19.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_1.n_468.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_1.n_468.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_20.n_24.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_20.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_21.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_2.n_228.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_2.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_3.n_224.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_3.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_4.n_213.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_4.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_5.n_188.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_5.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_6.n_187.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_6.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_7.n_170.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_7.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_8.n_155.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_8.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_9.n_154.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_9.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_0.n_624.PWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_0.n_624.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_1.n_375.PWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_1.n_375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_2.n_153.PWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_2.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_3.n_82.PWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_3.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all/ZNF248/ZNF248-201-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_4.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_0.n_2235.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_0.n_2235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_10.n_237.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_10.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_11.n_91.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_11.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_12.n_73.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_12.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_13.n_59.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_13.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_14.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_1.n_1946.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_1.n_1946.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_2.n_1914.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_2.n_1914.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_3.n_1885.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_3.n_1885.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_4.n_1424.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_4.n_1424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_5.n_674.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_5.n_674.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_6.n_537.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_6.n_537.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_7.n_377.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_7.n_377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_8.n_372.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_8.n_372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_9.n_310.PWM.meme motif-alignments-all-vs-all/ZBED4/ZBED4-201-vs-ZBED4-HepG2-ENCSR409PMR.bestfold.profile.pattern_9.n_310.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_5.n_1185.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_5.n_1185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_6.n_1054.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_6.n_1054.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_7.n_830.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_7.n_830.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_8.n_824.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_8.n_824.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_9.n_758.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_9.n_758.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_223.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-ZNF322-HEK430-Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HEK433-Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_0.n_1191.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_0.n_1191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_10.n_123.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_10.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_11.n_82.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_11.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_12.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_13.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_14.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_16.n_24.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_16.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_1.n_670.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_1.n_670.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_2.n_437.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_2.n_437.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_3.n_383.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_3.n_383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_4.n_375.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_4.n_375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_5.n_326.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_5.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_6.n_209.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_6.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_7.n_207.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_7.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_8.n_202.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_8.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_9.n_198.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_9.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.PWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ZNF789-HEK609-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_0.n_426.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_0.n_426.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_10.n_87.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_10.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_11.n_81.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_11.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_12.n_77.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_12.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_13.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_14.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_15.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_16.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_16.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_17.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_18.n_24.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_18.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_19.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_1.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_2.n_135.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_2.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_3.n_134.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_3.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_4.n_120.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_4.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_5.n_112.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_5.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_6.n_97.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_6.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_7.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_8.n_90.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_8.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_9.n_87.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_9.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_0.n_784.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_0.n_784.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_10.n_217.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_10.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_11.n_199.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_11.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_12.n_195.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_12.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_13.n_168.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_13.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_14.n_149.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_14.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_15.n_129.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_15.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_16.n_107.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_16.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_17.n_105.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_17.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_18.n_102.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_18.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_19.n_95.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_19.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_1.n_520.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_1.n_520.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_20.n_83.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_20.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_21.n_77.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_21.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_2.n_450.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_2.n_450.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_3.n_398.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_3.n_398.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_4.n_344.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_4.n_344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_5.n_337.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_5.n_337.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_6.n_326.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_6.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_7.n_308.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_7.n_308.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_8.n_282.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_8.n_282.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_9.n_226.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_9.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_0.n_426.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_0.n_426.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_10.n_87.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_10.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_11.n_81.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_11.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_12.n_77.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_12.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_13.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_14.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_15.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_16.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_16.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_17.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_18.n_24.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_18.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_19.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_1.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_2.n_135.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_2.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_3.n_134.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_3.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_4.n_120.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_4.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_5.n_112.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_5.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_6.n_97.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_6.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_7.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_8.n_90.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_8.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_9.n_87.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-A549-ENCSR548FLW.bestfold.profile.pattern_9.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_0.n_784.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_0.n_784.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_10.n_217.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_10.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_11.n_199.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_11.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_12.n_195.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_12.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_13.n_168.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_13.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_14.n_149.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_14.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_15.n_129.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_15.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_16.n_107.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_16.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_17.n_105.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_17.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_18.n_102.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_18.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_19.n_95.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_19.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_1.n_520.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_1.n_520.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_20.n_83.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_20.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_21.n_77.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_21.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_2.n_450.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_2.n_450.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_3.n_398.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_3.n_398.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_4.n_344.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_4.n_344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_5.n_337.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_5.n_337.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_6.n_326.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_6.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_7.n_308.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_7.n_308.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_8.n_282.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_8.n_282.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN20-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_9.n_226.PWM.meme motif-alignments-all-vs-all/ZSCAN20/ZSCAN20-201-vs-ZSCAN20-HepG2-ENCSR169JRW.bestfold.profile.pattern_9.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF404-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_0.n_1776.PWM.meme motif-alignments-all-vs-all/ZNF404/ZNF404-201-vs-ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_0.n_1776.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF404-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all/ZNF404/ZNF404-201-vs-ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_1.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF404-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_2.n_49.PWM.meme motif-alignments-all-vs-all/ZNF404/ZNF404-201-vs-ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_2.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-201-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-202-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_0.n_1690.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_10.n_268.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_11.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_12.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_13.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_14.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_15.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_16.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_17.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_18.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_1.n_1319.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_2.n_968.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_3.n_933.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_4.n_860.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_5.n_844.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_6.n_556.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_7.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_8.n_375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-HepG2-ENCSR005WGY.bestfold.profile.pattern_9.n_373.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_10.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_11.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_12.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_1.n_811.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_2.n_546.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_3.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_4.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_6.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_7.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_8.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_9.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_0.n_2213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_10.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_11.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_12.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_13.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_14.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_15.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_16.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_1.n_739.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_2.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_3.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_4.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_5.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_6.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_7.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_8.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.PWM.meme motif-alignments-all-vs-all/ZNF407/ZNF407-205-vs-ZNF407-K562-ENCSR439OCL.bestfold.profile.pattern_9.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_0.n_353.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_0.n_353.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_10.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_1.n_182.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_1.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_2.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_3.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_4.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_5.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF408/ZNF408-201-vs-ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_9.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_0.n_2496.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_0.n_2496.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_10.n_106.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_10.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_11.n_84.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_11.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_12.n_65.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_12.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_13.n_57.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_13.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_14.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_15.n_43.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_15.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_16.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_17.n_34.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_17.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_18.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_19.n_27.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_19.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_1.n_858.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_1.n_858.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_20.n_22.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_20.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_2.n_754.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_2.n_754.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_3.n_696.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_3.n_696.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_4.n_555.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_4.n_555.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_5.n_436.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_5.n_436.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_6.n_290.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_6.n_290.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_7.n_273.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_7.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_8.n_250.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_8.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_9.n_178.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_9.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_34.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_288.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_288.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_243.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_226.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_175.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_114.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_103.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_97.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_0.n_3039.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_0.n_3039.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_10.n_46.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_10.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_11.n_21.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_11.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_1.n_1275.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_1.n_1275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_2.n_867.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_2.n_867.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_3.n_765.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_3.n_765.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_4.n_757.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_4.n_757.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_5.n_373.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_5.n_373.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_6.n_357.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_6.n_357.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_7.n_241.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_7.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_8.n_190.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_8.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_9.n_184.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-KLF12-HepG2-ENCSR552YWL.bestfold.profile.pattern_9.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_0.n_7289.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_0.n_7289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_10.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_1.n_2634.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_1.n_2634.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_2.n_2158.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_2.n_2158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_3.n_1455.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_3.n_1455.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_4.n_761.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_4.n_761.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_5.n_713.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_5.n_713.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_6.n_517.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_6.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_7.n_394.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_7.n_394.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_8.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK293-ENCSR006GAQ.bestfold.profile.pattern_9.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_30.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_4.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_5.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_0.n_209.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_0.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_11.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_12.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_14.n_28.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_14.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_15.n_26.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_15.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_1.n_80.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_1.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_2.n_74.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_2.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_3.n_71.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_3.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_4.n_69.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_4.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_6.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_7.n_58.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_7.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_8.n_51.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_8.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-KLF10-K562-ENCSR121SPB.bestfold.profile.pattern_9.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_0.n_573.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_0.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_10.n_115.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_10.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_11.n_113.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_11.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_12.n_112.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_12.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_13.n_108.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_13.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_14.n_79.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_14.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_15.n_77.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_15.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_16.n_62.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_16.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_17.n_60.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_17.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_18.n_42.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_18.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_19.n_37.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_19.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_1.n_357.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_1.n_357.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_20.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_21.n_21.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_21.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_2.n_325.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_2.n_325.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_3.n_291.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_3.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_4.n_255.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_4.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_5.n_202.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_5.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_6.n_166.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_6.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_7.n_150.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_7.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_8.n_130.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_8.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_9.n_117.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-KLF15-HepG2-ENCSR860ONE.bestfold.profile.pattern_9.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_10.n_299.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_10.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_11.n_275.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_11.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_12.n_226.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_12.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_13.n_220.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_13.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_14.n_183.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_14.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_15.n_173.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_15.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_16.n_171.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_16.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_17.n_148.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_17.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_18.n_121.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_18.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_19.n_118.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_19.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_463.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_463.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_20.n_95.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_20.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_21.n_90.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_21.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_22.n_65.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_22.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_23.n_56.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_23.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_24.n_34.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_24.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_448.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_448.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_440.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_440.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_4.n_425.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_4.n_425.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_5.n_411.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_5.n_411.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_6.n_389.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_6.n_389.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_7.n_354.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_7.n_354.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_8.n_318.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_8.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_9.n_304.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_9.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HEK293-ENCSR348ONY.bestfold.profile.pattern_0.n_104.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HEK293-ENCSR348ONY.bestfold.profile.pattern_0.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HEK293-ENCSR348ONY.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HEK293-ENCSR348ONY.bestfold.profile.pattern_1.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HEK293-ENCSR348ONY.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HEK293-ENCSR348ONY.bestfold.profile.pattern_2.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HEK293-ENCSR348ONY.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HEK293-ENCSR348ONY.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_0.n_872.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_0.n_872.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_10.n_131.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_10.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_11.n_106.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_11.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_12.n_99.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_12.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_13.n_97.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_13.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_14.n_84.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_14.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_15.n_53.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_15.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_16.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_1.n_812.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_1.n_812.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_2.n_430.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_2.n_430.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_3.n_376.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_3.n_376.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_4.n_283.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_4.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_5.n_179.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_5.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_6.n_160.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_6.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_7.n_158.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_7.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_8.n_150.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_8.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_9.n_135.PWM.meme motif-alignments-all-vs-all/ZFP41/ZFP41-201-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_9.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_0.n_4110.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_0.n_4110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_1.n_3423.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_1.n_3423.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_2.n_179.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_2.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_3.n_158.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_3.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_5.n_91.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_5.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_6.n_89.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_6.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_7.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_8.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_1.n_347.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_1.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_2.n_160.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_2.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_3.n_125.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_3.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_4.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-201-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_6.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_0.n_4110.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_0.n_4110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_1.n_3423.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_1.n_3423.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_2.n_179.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_2.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_3.n_158.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_3.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_4.n_119.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_4.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_5.n_91.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_5.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_6.n_89.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_6.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_7.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-HEK293-ENCSR477OJI.bestfold.profile.pattern_8.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_1.n_347.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_1.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_2.n_160.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_2.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_3.n_125.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_3.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_4.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all/ZNF423/ZNF423-202-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_6.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_0.n_4806.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_0.n_4806.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_10.n_288.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_10.n_288.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_11.n_287.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_11.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_12.n_242.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_12.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_13.n_178.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_13.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_14.n_152.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_14.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_15.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_15.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_16.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_16.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_17.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_1.n_4037.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_1.n_4037.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_2.n_2352.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_2.n_2352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_3.n_1815.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_3.n_1815.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_4.n_1515.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_4.n_1515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_5.n_1363.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_5.n_1363.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_6.n_1099.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_6.n_1099.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_7.n_797.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_7.n_797.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_8.n_390.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_8.n_390.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_9.n_382.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_9.n_382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_0.n_864.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_0.n_864.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_10.n_88.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_10.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_11.n_79.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_11.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_12.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_13.n_72.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_13.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_14.n_62.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_14.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_15.n_60.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_15.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_16.n_55.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_16.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_17.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_17.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_18.n_37.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_18.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_19.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_19.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_1.n_188.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_1.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_20.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_20.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_21.n_29.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_21.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_22.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_22.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_23.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_23.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_24.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_25.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_25.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_2.n_170.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_2.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_3.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_3.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_4.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_4.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_5.n_132.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_5.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_6.n_118.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_6.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_7.n_109.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_7.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_8.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_8.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_9.n_91.PWM.meme motif-alignments-all-vs-all/ZBTB7B/ZBTB7B-201-vs-ZBTB7B-MCF-7-ENCSR277BXW.bestfold.profile.pattern_9.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_0.n_124.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_0.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_10.n_49.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_10.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_11.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_12.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_13.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_14.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_15.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_1.n_110.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_1.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_2.n_105.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_2.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_3.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_4.n_75.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_4.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_5.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_6.n_69.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_6.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_7.n_68.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_7.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_8.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF717-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZNF717/ZNF717-204-vs-ZNF717-K562-ENCSR987KYK.bestfold.profile.pattern_9.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_0.n_5368.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_0.n_5368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_10.n_477.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_10.n_477.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_11.n_322.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_11.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_12.n_285.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_12.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_13.n_240.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_13.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_14.n_154.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_14.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_15.n_150.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_15.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_16.n_122.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_16.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_17.n_50.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_17.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_18.n_46.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_18.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_19.n_40.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_19.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_1.n_3281.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_1.n_3281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_20.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_21.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_23.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_24.n_20.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_24.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_2.n_2246.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_2.n_2246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_3.n_1784.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_3.n_1784.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_4.n_1338.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_4.n_1338.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_5.n_973.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_5.n_973.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_6.n_568.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_6.n_568.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_7.n_557.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_7.n_557.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_8.n_504.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_8.n_504.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_9.n_480.PWM.meme motif-alignments-all-vs-all/ZNF710/ZNF710-201-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_9.n_480.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_0.n_1256.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_0.n_1256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_10.n_63.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_10.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_11.n_63.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_11.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_12.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_13.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_14.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_16.n_27.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_16.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_17.n_26.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_17.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_1.n_1066.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_1.n_1066.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_2.n_491.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_2.n_491.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_3.n_357.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_3.n_357.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_4.n_303.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_4.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_5.n_127.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_5.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_6.n_98.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_6.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_7.n_85.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_7.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_9.n_63.PWM.meme motif-alignments-all-vs-all/ZNF713/ZNF713-201-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_9.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ZNF429-HEK465-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_0.n_1554.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_0.n_1554.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_10.n_116.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_10.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_11.n_80.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_11.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_12.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_13.n_26.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_13.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_14.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_15.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_1.n_1258.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_1.n_1258.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_2.n_1073.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_2.n_1073.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_3.n_503.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_3.n_503.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_4.n_334.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_4.n_334.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_5.n_234.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_5.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_6.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_7.n_151.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_7.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_8.n_150.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_8.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_9.n_146.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-HepG2-ENCSR801SNX.bestfold.profile.pattern_9.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_0.n_546.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_0.n_546.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_10.n_34.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_10.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_11.n_30.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_11.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_1.n_461.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_1.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_2.n_343.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_2.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_3.n_158.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_3.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_4.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_5.n_71.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_5.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_6.n_64.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_6.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_7.n_63.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_7.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_8.n_46.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_8.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR555DCF.bestfold.profile.pattern_9.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_0.n_1616.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_0.n_1616.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_10.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_11.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_12.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_1.n_872.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_1.n_872.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_2.n_744.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_2.n_744.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_3.n_534.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_3.n_534.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_4.n_531.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_4.n_531.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_5.n_265.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_5.n_265.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_6.n_253.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_6.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_7.n_147.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_7.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_8.n_95.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_8.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_9.n_82.PWM.meme motif-alignments-all-vs-all/ZNF512B/ZNF512B-201-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_9.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_0.n_1153.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_0.n_1153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_10.n_56.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_10.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_11.n_45.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_11.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_12.n_27.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_12.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_1.n_427.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_1.n_427.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_2.n_230.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_2.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_3.n_221.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_3.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_4.n_141.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_4.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_5.n_116.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_5.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_6.n_109.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_6.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_7.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_9.n_66.PWM.meme motif-alignments-all-vs-all/ZNF79/ZNF79-201-vs-ZNF79-K562-ENCSR995FUM.bestfold.profile.pattern_9.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_0.n_3536.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_0.n_3536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_10.n_36.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_10.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_1.n_3338.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_1.n_3338.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_2.n_284.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_2.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_3.n_238.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_3.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_4.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_5.n_77.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_5.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_6.n_71.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_6.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_7.n_67.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_7.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_8.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF70-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_9.n_56.PWM.meme motif-alignments-all-vs-all/ZNF70/ZNF70-201-vs-ZNF70-SK-N-SH-ENCSR207GYC.bestfold.profile.pattern_9.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_10.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_11.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_1.n_1048.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_2.n_484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_3.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_4.n_342.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_5.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_6.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_7.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_8.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_9.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-HEK592-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_0.n_744.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_10.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_11.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_12.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_13.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_14.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_15.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_16.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_1.n_438.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_2.n_348.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_3.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_4.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_5.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_6.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_7.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_8.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-ZNF76-K562-ENCSR257AFV.bestfold.profile.pattern_9.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-HEK597-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_0.n_63.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_0.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_10.n_37.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_10.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_11.n_37.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_11.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_13.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_14.n_30.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_14.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_15.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_16.n_29.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_16.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_17.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_18.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_19.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_1.n_59.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_1.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_20.n_24.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_20.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_21.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_2.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_3.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_4.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_5.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_6.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_7.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_8.n_44.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_8.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ZNF77-K562-ENCSR844MAB.bestfold.profile.pattern_9.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_0.n_4705.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_0.n_4705.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_1.n_2047.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_1.n_2047.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_2.n_480.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_2.n_480.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_3.n_392.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_3.n_392.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_4.n_146.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_4.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_5.n_123.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_5.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK293-ENCSR464KFG.bestfold.profile.pattern_6.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-HEK362-Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_0.n_407.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_0.n_407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_11.n_40.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_11.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_12.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_13.n_27.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_13.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_14.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_1.n_185.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_1.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_2.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_3.n_97.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_3.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_4.n_94.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_4.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_5.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_6.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_7.n_55.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_7.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_8.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_9.n_41.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-ZNF140-K562-ENCSR377HQG.bestfold.profile.pattern_9.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_0.n_18074.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_0.n_18074.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_1.n_799.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_1.n_799.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_2.n_621.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_2.n_621.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_3.n_445.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_3.n_445.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_4.n_189.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_4.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_5.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_6.n_64.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_6.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_7.n_55.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_7.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_8.n_44.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_8.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR000DZL.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_0.n_11721.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_0.n_11721.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_10.n_264.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_10.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_11.n_258.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_11.n_258.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_12.n_181.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_12.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_13.n_170.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_13.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_14.n_164.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_14.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_15.n_114.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_15.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_16.n_108.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_16.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_17.n_108.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_17.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_18.n_102.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_18.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_19.n_74.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_19.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_1.n_2979.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_1.n_2979.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_20.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_21.n_36.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_21.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_22.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_24.n_28.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_24.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_25.n_28.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_25.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_26.n_27.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_26.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_2.n_2098.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_2.n_2098.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_3.n_1926.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_3.n_1926.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_4.n_1014.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_4.n_1014.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_5.n_851.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_5.n_851.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_6.n_592.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_6.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_7.n_502.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_7.n_502.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_8.n_419.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_8.n_419.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_9.n_349.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-GM12878-ENCSR936XTK.bestfold.profile.pattern_9.n_349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_0.n_15803.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_0.n_15803.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_10.n_213.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_10.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_11.n_198.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_11.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_12.n_177.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_12.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_13.n_171.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_13.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_14.n_166.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_14.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_15.n_165.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_15.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_16.n_165.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_16.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_17.n_158.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_17.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_18.n_149.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_18.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_19.n_137.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_19.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_1.n_2911.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_1.n_2911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_20.n_135.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_20.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_21.n_129.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_21.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_22.n_125.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_22.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_23.n_113.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_23.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_24.n_106.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_24.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_25.n_105.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_25.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_26.n_100.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_26.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_27.n_99.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_27.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_28.n_88.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_28.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_29.n_86.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_29.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_2.n_754.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_2.n_754.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_30.n_76.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_30.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_31.n_64.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_31.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_32.n_55.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_32.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_33.n_54.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_33.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_34.n_48.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_34.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_35.n_36.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_35.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_36.n_29.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_36.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_37.n_27.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_37.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_38.n_22.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_38.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_3.n_707.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_3.n_707.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_4.n_694.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_4.n_694.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_5.n_535.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_5.n_535.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_6.n_410.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_6.n_410.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_7.n_353.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_7.n_353.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_8.n_262.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_8.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_9.n_214.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-H1-ENCSR000EBW.bestfold.profile.pattern_9.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_0.n_3584.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_0.n_3584.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_10.n_71.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_10.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_11.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_12.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_13.n_39.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_13.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_14.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_1.n_1935.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_1.n_1935.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_2.n_1445.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_2.n_1445.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_3.n_316.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_3.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_4.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_5.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_6.n_236.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_6.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_7.n_230.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_7.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_8.n_180.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_8.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_9.n_71.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HeLa-S3-ENCSR000ECO.bestfold.profile.pattern_9.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_0.n_6129.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_0.n_6129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_10.n_61.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_10.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_11.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_12.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_1.n_1213.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_1.n_1213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_2.n_771.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_2.n_771.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_3.n_597.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_3.n_597.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_4.n_518.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_4.n_518.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_5.n_408.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_5.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_6.n_319.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_6.n_319.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_7.n_266.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_7.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_8.n_174.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_8.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_9.n_63.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-HepG2-ENCSR080UEM.bestfold.profile.pattern_9.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_0.n_15253.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_0.n_15253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_10.n_255.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_10.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_11.n_205.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_11.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_12.n_192.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_12.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_13.n_169.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_13.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_14.n_153.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_14.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_15.n_146.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_15.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_16.n_127.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_16.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_17.n_81.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_17.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_18.n_56.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_18.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_19.n_44.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_19.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_1.n_1359.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_1.n_1359.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_20.n_42.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_20.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_21.n_33.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_21.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_22.n_29.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_22.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_23.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_24.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_2.n_1042.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_2.n_1042.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_3.n_988.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_3.n_988.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_4.n_784.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_4.n_784.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_5.n_512.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_5.n_512.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_6.n_474.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_6.n_474.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_7.n_450.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_7.n_450.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_8.n_386.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_8.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_9.n_327.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_9.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_0.n_4079.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_0.n_4079.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_1.n_413.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_1.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_2.n_306.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_2.n_306.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_3.n_211.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_3.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_4.n_211.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_4.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_5.n_171.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_5.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_6.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_7.n_26.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_7.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_9.n_22.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-K562-ENCSR427WZJ.bestfold.profile.pattern_9.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_0.n_2803.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_0.n_2803.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_10.n_44.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_10.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_11.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_1.n_2043.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_1.n_2043.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_2.n_490.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_2.n_490.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_3.n_271.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_3.n_271.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_4.n_200.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_4.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_5.n_176.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_5.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_6.n_88.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_6.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_7.n_61.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_7.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_8.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_9.n_59.PWM.meme motif-alignments-all-vs-all/ZNF143/ZNF143-201-vs-ZNF143-WTC11-ENCSR063FUV.bestfold.profile.pattern_9.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_0.n_1777.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_0.n_1777.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_10.n_263.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_10.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_11.n_243.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_11.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_12.n_218.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_12.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_13.n_166.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_13.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_14.n_100.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_14.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_15.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_16.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_1.n_834.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_1.n_834.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_2.n_606.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_2.n_606.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_3.n_387.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_3.n_387.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_4.n_382.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_4.n_382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_5.n_324.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_5.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_6.n_323.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_6.n_323.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_7.n_316.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_7.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_8.n_288.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_8.n_288.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_9.n_282.PWM.meme motif-alignments-all-vs-all/ZNF142/ZNF142-201-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_9.n_282.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_0.n_16840.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_0.n_16840.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_1.n_139.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_1.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_2.n_118.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK293-ENCSR689YFA.bestfold.profile.pattern_2.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_12.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_13.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_14.n_88.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_14.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_15.n_87.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_15.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_16.n_86.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_16.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_45.n_44.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_45.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_48.n_37.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_48.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_49.n_35.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_49.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HEK364-Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_0.n_15464.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_0.n_15464.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_10.n_116.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_10.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_11.n_107.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_11.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_12.n_103.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_12.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_13.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_14.n_89.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_14.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_15.n_77.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_15.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_16.n_76.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_16.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_17.n_69.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_17.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_18.n_45.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_18.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_1.n_449.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_1.n_449.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_2.n_283.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_2.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_3.n_209.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_3.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_4.n_201.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_4.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_5.n_179.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_5.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_6.n_178.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_6.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_7.n_149.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_7.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_8.n_133.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_8.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_9.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_0.n_13401.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_0.n_13401.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_10.n_144.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_10.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_11.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_12.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_13.n_90.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_13.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_14.n_84.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_14.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_15.n_82.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_15.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_16.n_82.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_16.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_17.n_80.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_17.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_18.n_62.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_18.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_19.n_31.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_19.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_1.n_746.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_1.n_746.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_20.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_2.n_728.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_2.n_728.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_3.n_676.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_3.n_676.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_4.n_486.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_4.n_486.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_5.n_243.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_5.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_6.n_230.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_6.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_7.n_206.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_7.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_8.n_176.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_8.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_9.n_155.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-ZNF146-K562-ENCSR713IFY.bestfold.profile.pattern_9.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_0.n_713.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_0.n_713.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_10.n_40.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_10.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_1.n_127.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_1.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_2.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_3.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_4.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_5.n_83.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_5.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_6.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_7.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_8.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_9.n_40.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-HEK293-ENCSR736ZKL.bestfold.profile.pattern_9.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_0.n_11288.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_0.n_11288.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_10.n_72.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_10.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_11.n_45.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_11.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_12.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_13.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_1.n_2299.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_1.n_2299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_2.n_1254.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_2.n_1254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_3.n_325.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_3.n_325.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_4.n_268.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_4.n_268.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_5.n_263.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_5.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_6.n_194.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_6.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_7.n_154.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_7.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_8.n_104.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_8.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_9.n_90.PWM.meme motif-alignments-all-vs-all/ZNF148/ZNF148-201-vs-ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_9.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_0.n_1796.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_0.n_1796.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_10.n_120.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_10.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_11.n_104.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_11.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_12.n_78.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_12.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_13.n_64.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_13.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_14.n_57.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_14.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_15.n_33.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_15.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_16.n_32.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_16.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_1.n_1591.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_1.n_1591.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_2.n_1298.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_2.n_1298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_3.n_946.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_3.n_946.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_4.n_857.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_4.n_857.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_5.n_311.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_5.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_6.n_255.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_6.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_7.n_228.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_7.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_8.n_200.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_8.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_9.n_127.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-HepG2-ENCSR586DEH.bestfold.profile.pattern_9.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_0.n_1224.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_0.n_1224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_10.n_112.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_10.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_11.n_104.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_11.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_12.n_103.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_12.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_13.n_98.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_13.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_14.n_84.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_14.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_15.n_82.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_15.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_16.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_17.n_48.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_17.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_18.n_22.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_18.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_1.n_332.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_1.n_332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_2.n_284.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_2.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_3.n_263.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_3.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_4.n_262.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_4.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_5.n_229.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_5.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_6.n_164.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_6.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_7.n_159.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_7.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_8.n_136.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_8.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_9.n_126.PWM.meme motif-alignments-all-vs-all/ZFP1/ZFP1-201-vs-ZFP1-K562-ENCSR617POJ.bestfold.profile.pattern_9.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_0.n_2422.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_0.n_2422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_1.n_456.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_1.n_456.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_2.n_352.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_2.n_352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_3.n_248.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_3.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_4.n_86.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_4.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_5.n_84.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_5.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_6.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_7.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK293-ENCSR134QIE.bestfold.profile.pattern_8.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_117.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_10.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_11.n_28.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_11.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_12.n_27.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_12.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_13.n_26.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_13.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_14.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_2.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_3.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_4.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_5.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_6.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_7.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_8.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-HEK333-Hughes_NB_models_ZFP3.bestfold.profile.pattern_9.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_0.n_4229.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_0.n_4229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_10.n_216.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_10.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_11.n_207.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_11.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_12.n_198.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_12.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_13.n_192.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_13.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_14.n_91.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_14.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_15.n_90.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_15.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_16.n_76.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_16.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_17.n_74.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_17.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_18.n_69.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_18.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_19.n_64.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_19.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_1.n_2950.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_1.n_2950.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_20.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_22.n_36.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_22.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_23.n_34.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_23.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_24.n_33.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_24.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_25.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_2.n_1025.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_2.n_1025.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_3.n_452.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_3.n_452.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_4.n_392.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_4.n_392.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_5.n_366.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_5.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_6.n_355.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_6.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_7.n_354.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_7.n_354.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_8.n_341.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_8.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_9.n_273.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_9.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_0.n_2888.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_0.n_2888.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_10.n_141.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_10.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_11.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_1.n_1066.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_1.n_1066.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_2.n_1052.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_2.n_1052.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_3.n_489.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_3.n_489.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_4.n_299.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_4.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_6.n_234.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_6.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_7.n_168.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_7.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_8.n_164.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_8.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_9.n_145.PWM.meme motif-alignments-all-vs-all/ZNF782/ZNF782-208-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_9.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_0.n_1248.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_0.n_1248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_10.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_11.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_12.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_13.n_26.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_13.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_1.n_1210.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_1.n_1210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_2.n_867.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_2.n_867.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_3.n_867.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_3.n_867.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_4.n_331.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_4.n_331.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_5.n_317.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_5.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_6.n_317.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_6.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_7.n_212.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_7.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_8.n_195.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_8.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_9.n_182.PWM.meme motif-alignments-all-vs-all/ZNF781/ZNF781-201-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_9.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HEK608-ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_0.n_991.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_0.n_991.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_10.n_200.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_10.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_11.n_182.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_11.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_12.n_166.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_12.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_13.n_148.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_13.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_14.n_143.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_14.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_15.n_114.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_15.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_16.n_107.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_16.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_17.n_104.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_17.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_18.n_81.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_18.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_19.n_59.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_19.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_1.n_900.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_1.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_2.n_458.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_2.n_458.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_3.n_452.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_3.n_452.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_4.n_304.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_4.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_5.n_249.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_5.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_6.n_217.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_6.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_7.n_214.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_7.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_8.n_209.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_8.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_9.n_207.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ZNF786-HepG2-ENCSR206BVQ.bestfold.profile.pattern_9.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_0.n_885.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_0.n_885.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_10.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_11.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_1.n_162.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_1.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_2.n_125.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_2.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_3.n_124.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_3.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_4.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_5.n_93.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_5.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_6.n_81.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_6.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_7.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_8.n_76.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_8.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_9.n_40.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-HEK293-ENCSR950ACO.bestfold.profile.pattern_9.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_0.n_230.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_0.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_1.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_2.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_3.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_4.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_5.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all/ZNF785/ZNF785-201-vs-ZNF785-K562-ENCSR222TVA.bestfold.profile.pattern_7.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_10.n_92.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_10.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_12.n_49.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_12.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_13.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_14.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_1.n_1711.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_1.n_1711.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_2.n_1486.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_2.n_1486.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_3.n_985.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_3.n_985.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_4.n_587.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_4.n_587.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_5.n_488.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_5.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_6.n_428.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_6.n_428.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_7.n_409.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_7.n_409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_8.n_287.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_8.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_9.n_255.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-201-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_9.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_10.n_92.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_10.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_12.n_49.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_12.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_13.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_14.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_1.n_1711.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_1.n_1711.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_2.n_1486.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_2.n_1486.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_3.n_985.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_3.n_985.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_4.n_587.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_4.n_587.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_5.n_488.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_5.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_6.n_428.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_6.n_428.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_7.n_409.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_7.n_409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_8.n_287.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_8.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_9.n_255.PWM.meme motif-alignments-all-vs-all/ZNF784/ZNF784-202-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_9.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_0.n_9044.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_0.n_9044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_10.n_245.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_10.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_11.n_207.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_11.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_12.n_160.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_12.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_13.n_122.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_13.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_14.n_90.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_14.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_15.n_52.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_15.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_16.n_47.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_16.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_17.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_1.n_4850.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_1.n_4850.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_2.n_4239.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_2.n_4239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_3.n_2634.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_3.n_2634.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_4.n_1384.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_4.n_1384.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_5.n_1221.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_5.n_1221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_6.n_851.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_6.n_851.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_7.n_792.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_7.n_792.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_8.n_530.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_8.n_530.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_9.n_464.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_9.n_464.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_0.n_405.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_0.n_405.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_10.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_11.n_27.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_11.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_12.n_24.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_12.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_1.n_213.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_1.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_2.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_3.n_63.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_3.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_4.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_5.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_6.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_7.n_33.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_7.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_8.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all/ZNF660/ZNF660-201-vs-ZNF660-HepG2-ENCSR902AMJ.bestfold.profile.pattern_9.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_0.n_4637.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_0.n_4637.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_10.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_11.n_53.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_11.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_12.n_49.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_12.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_13.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_14.n_31.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_14.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_1.n_2825.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_1.n_2825.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_2.n_2492.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_2.n_2492.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_3.n_877.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_3.n_877.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_4.n_795.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_4.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_5.n_638.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_5.n_638.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_6.n_577.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_6.n_577.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_7.n_455.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_7.n_455.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_8.n_310.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_8.n_310.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZSCAN25-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_9.n_101.PWM.meme motif-alignments-all-vs-all/ZSCAN25/ZSCAN25-202-vs-ZSCAN25-HepG2-ENCSR037LQB.bestfold.profile.pattern_9.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_0.n_9743.PWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_0.n_9743.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_1.n_9196.PWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_1.n_9196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_2.n_3052.PWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_2.n_3052.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_3.n_198.PWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_3.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_4.n_140.PWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_4.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_5.n_132.PWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_5.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_6.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF664/ZNF664-201-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_7.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_0.n_2250.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_0.n_2250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_10.n_90.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_10.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_11.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_12.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_13.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_13.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_14.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_15.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_1.n_2155.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_1.n_2155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_2.n_1589.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_2.n_1589.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_3.n_1332.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_3.n_1332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_4.n_766.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_4.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_5.n_724.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_5.n_724.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_6.n_337.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_6.n_337.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_7.n_281.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_7.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_8.n_165.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_8.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_9.n_109.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_9.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_0.n_2215.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_0.n_2215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_10.n_492.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_10.n_492.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_11.n_479.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_11.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_12.n_442.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_12.n_442.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_13.n_377.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_13.n_377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_14.n_377.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_14.n_377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_15.n_223.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_15.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_16.n_146.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_16.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_17.n_120.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_17.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_18.n_93.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_18.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_19.n_91.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_19.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_1.n_1216.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_1.n_1216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_20.n_80.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_20.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_21.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_21.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_22.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_22.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_2.n_1055.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_2.n_1055.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_3.n_811.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_3.n_811.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_4.n_692.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_4.n_692.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_5.n_592.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_5.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_6.n_569.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_6.n_569.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_7.n_525.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_7.n_525.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_8.n_515.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_8.n_515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_9.n_493.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_9.n_493.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_0.n_2250.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_0.n_2250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_10.n_90.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_10.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_11.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_12.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_13.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_13.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_14.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_15.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_1.n_2155.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_1.n_2155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_2.n_1589.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_2.n_1589.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_3.n_1332.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_3.n_1332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_4.n_766.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_4.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_5.n_724.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_5.n_724.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_6.n_337.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_6.n_337.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_7.n_281.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_7.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_8.n_165.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_8.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_9.n_109.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HEK293-ENCSR253CKN.bestfold.profile.pattern_9.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_0.n_2215.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_0.n_2215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_10.n_492.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_10.n_492.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_11.n_479.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_11.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_12.n_442.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_12.n_442.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_13.n_377.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_13.n_377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_14.n_377.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_14.n_377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_15.n_223.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_15.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_16.n_146.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_16.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_17.n_120.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_17.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_18.n_93.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_18.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_19.n_91.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_19.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_1.n_1216.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_1.n_1216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_20.n_80.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_20.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_21.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_21.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_22.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_22.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_2.n_1055.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_2.n_1055.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_3.n_811.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_3.n_811.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_4.n_692.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_4.n_692.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_5.n_592.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_5.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_6.n_569.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_6.n_569.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_7.n_525.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_7.n_525.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_8.n_515.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_8.n_515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN21-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_9.n_493.PWM.meme motif-alignments-all-vs-all/ZSCAN21/ZSCAN21-201-vs-ZSCAN21-HepG2-ENCSR210DDA.bestfold.profile.pattern_9.n_493.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_0.n_2270.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_0.n_2270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_1.n_246.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_1.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_2.n_165.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_2.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_3.n_156.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_3.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_4.n_98.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_4.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_5.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HEK631-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_0.n_2270.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_0.n_2270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_1.n_246.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_1.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_2.n_165.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_2.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_3.n_156.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_3.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_4.n_98.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_4.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_5.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-ZSCAN22-HepG2-ENCSR050KWL.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_0.n_1618.PWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_0.n_1618.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_10.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_1.n_1399.PWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_1.n_1399.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_2.n_371.PWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_2.n_371.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_3.n_323.PWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_3.n_323.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_4.n_276.PWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_4.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_5.n_215.PWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_5.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_6.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_7.n_107.PWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_7.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_8.n_82.PWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_8.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN23-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN23/ZSCAN23-201-vs-ZSCAN23-HEK293-ENCSR705ASR.bestfold.profile.pattern_9.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_0.n_933.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_0.n_933.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_1.n_196.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_1.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_2.n_182.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_2.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_3.n_137.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_3.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_4.n_124.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_4.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_5.n_63.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_5.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK293-ENCSR211PZO.bestfold.profile.pattern_6.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_0.n_1284.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_0.n_1284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_10.n_92.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_10.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_11.n_89.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_11.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_12.n_57.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_12.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_13.n_46.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_13.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_1.n_1136.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_1.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_2.n_1135.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_2.n_1135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_3.n_1112.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_3.n_1112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_4.n_528.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_4.n_528.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_5.n_412.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_5.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_6.n_374.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_6.n_374.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_7.n_288.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_7.n_288.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_8.n_249.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_8.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-GLI4-HepG2-ENCSR502YME.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_0.n_188.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_0.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_10.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_1.n_104.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_1.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_2.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_3.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_4.n_53.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_4.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_5.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_6.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_8.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF551-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF551/ZNF551-201-vs-ZNF551-K562-ENCSR451UQX.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_0.n_420.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_0.n_420.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_10.n_102.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_10.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_11.n_96.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_11.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_12.n_76.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_12.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_13.n_71.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_13.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_14.n_57.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_14.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_1.n_277.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_1.n_277.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_2.n_276.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_2.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_3.n_256.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_3.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_4.n_194.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_4.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_5.n_182.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_5.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_6.n_174.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_6.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_7.n_127.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_7.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_8.n_125.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_8.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_9.n_121.PWM.meme motif-alignments-all-vs-all/ZNF367/ZNF367-201-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_9.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_0.n_883.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_0.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_10.n_39.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_10.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_1.n_679.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_1.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_2.n_323.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_2.n_323.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_3.n_86.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_3.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_4.n_75.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_4.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_6.n_60.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_6.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_7.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_8.n_44.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_8.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-K562-ENCSR164RIC.bestfold.profile.pattern_9.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_0.n_10989.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_0.n_10989.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_10.n_172.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_10.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_11.n_131.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_11.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_12.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_13.n_107.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_13.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_14.n_101.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_14.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_15.n_99.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_15.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_16.n_86.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_16.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_17.n_86.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_17.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_18.n_46.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_18.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_19.n_39.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_19.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_1.n_2669.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_1.n_2669.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_20.n_35.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_20.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_21.n_33.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_21.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_22.n_27.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_22.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_23.n_24.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_23.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_24.n_24.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_24.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_2.n_2542.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_2.n_2542.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_3.n_1121.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_3.n_1121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_4.n_861.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_4.n_861.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_5.n_413.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_5.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_6.n_386.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_6.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_7.n_369.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_7.n_369.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_8.n_244.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_8.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_9.n_185.PWM.meme motif-alignments-all-vs-all/ZNF444/ZNF444-201-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_9.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_0.n_609.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_0.n_609.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_10.n_70.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_10.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_11.n_66.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_11.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_12.n_58.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_12.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_13.n_57.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_13.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_14.n_57.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_14.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_15.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_16.n_39.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_16.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_17.n_34.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_17.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_18.n_26.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_18.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_1.n_216.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_1.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_2.n_150.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_2.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_3.n_147.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_3.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_4.n_147.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_4.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_5.n_112.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_5.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_6.n_108.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_6.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_7.n_91.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_7.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_8.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZNF445/ZNF445-201-vs-ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_9.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-202-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-203-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_10.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_11.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_12.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_1.n_608.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_2.n_590.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_3.n_562.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_4.n_444.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_5.n_344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_6.n_321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_7.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_8.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.PWM.meme motif-alignments-all-vs-all/ZNF446/ZNF446-207-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_9.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_10.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_11.n_37.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_11.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_12.n_33.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_12.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HEK474-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_0.n_2040.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_0.n_2040.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_10.n_340.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_10.n_340.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_11.n_265.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_11.n_265.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_12.n_247.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_12.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_13.n_227.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_13.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_14.n_191.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_14.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_15.n_179.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_15.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_16.n_171.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_16.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_17.n_124.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_17.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_18.n_83.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_18.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_19.n_81.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_19.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_1.n_1908.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_1.n_1908.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_20.n_24.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_20.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_21.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_22.n_20.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_22.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_2.n_1656.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_2.n_1656.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_3.n_1504.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_3.n_1504.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_4.n_1443.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_4.n_1443.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_5.n_749.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_5.n_749.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_6.n_608.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_6.n_608.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_7.n_521.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_7.n_521.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_8.n_519.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_8.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_9.n_398.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_9.n_398.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_0.n_12655.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_0.n_12655.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_1.n_372.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_1.n_372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK293-ENCSR738SLS.bestfold.profile.pattern_2.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-HEK478-Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_0.n_1181.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_0.n_1181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_10.n_83.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_10.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_11.n_81.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_11.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_13.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_14.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_15.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_1.n_1115.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_1.n_1115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_2.n_431.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_2.n_431.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_3.n_309.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_3.n_309.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_4.n_228.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_4.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_5.n_194.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_5.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_6.n_183.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_6.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_7.n_157.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_7.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_8.n_144.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_8.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_9.n_124.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_9.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_0.n_1849.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_0.n_1849.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_1.n_313.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_1.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_2.n_212.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_2.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_3.n_172.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_3.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_5.n_137.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HeLa-S3-ENCSR000ECJ.bestfold.profile.pattern_5.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_0.n_4274.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_0.n_4274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_1.n_1004.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_1.n_1004.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_2.n_729.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_2.n_729.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_3.n_600.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_3.n_600.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_4.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-HepG2-ENCSR157CAU.bestfold.profile.pattern_6.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_0.n_6402.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_0.n_6402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_10.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_11.n_31.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_11.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_1.n_2128.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_1.n_2128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_2.n_1825.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_2.n_1825.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_3.n_1210.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_3.n_1210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_4.n_1099.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_4.n_1099.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_5.n_140.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_5.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_6.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_7.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_8.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_9.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_0.n_1057.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_0.n_1057.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_1.n_584.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_1.n_584.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_2.n_451.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_2.n_451.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_3.n_353.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_3.n_353.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_4.n_186.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_4.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_5.n_116.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_5.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_6.n_82.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_6.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_8.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZKSCAN1/ZKSCAN1-201-vs-ZKSCAN1-MCF-7-ENCSR449UFF.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_0.n_383.PWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_0.n_383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_1.n_273.PWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_1.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_2.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_3.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_5.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_6.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZKSCAN3/ZKSCAN3-201-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_7.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_0.n_2543.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_0.n_2543.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_1.n_301.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_1.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_2.n_275.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_2.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_3.n_238.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_3.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_4.n_229.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_4.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_5.n_213.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_5.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_6.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_7.n_72.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_7.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_8.n_54.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_8.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_9.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HEK348-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_0.n_2543.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_0.n_2543.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_1.n_301.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_1.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_2.n_275.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_2.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_3.n_238.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_3.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_4.n_229.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_4.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_5.n_213.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_5.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_6.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_7.n_72.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_7.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_8.n_54.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_8.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_9.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_10.n_99.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_10.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_11.n_97.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_11.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_12.n_86.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_12.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_13.n_84.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_13.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_14.n_78.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_14.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_15.n_67.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_15.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_16.n_63.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_16.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_17.n_60.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_17.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_18.n_52.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_18.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_19.n_45.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_19.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_1.n_327.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_1.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_20.n_44.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_20.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_21.n_34.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_21.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_22.n_31.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_22.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_24.n_29.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_24.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_2.n_292.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_2.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_3.n_227.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_3.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_4.n_174.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_4.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_5.n_124.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_5.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_6.n_123.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_6.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_7.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_8.n_101.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_8.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-201-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_9.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_10.n_99.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_10.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_11.n_97.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_11.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_12.n_86.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_12.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_13.n_84.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_13.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_14.n_78.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_14.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_15.n_67.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_15.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_16.n_63.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_16.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_17.n_60.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_17.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_18.n_52.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_18.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_19.n_45.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_19.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_1.n_327.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_1.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_20.n_44.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_20.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_21.n_34.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_21.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_22.n_31.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_22.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_24.n_29.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_24.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_2.n_292.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_2.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_3.n_227.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_3.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_4.n_174.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_4.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_5.n_124.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_5.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_6.n_123.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_6.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_7.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_8.n_101.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_8.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZNF569/ZNF569-203-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_9.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HEK529-ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_0.n_3884.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_0.n_3884.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_10.n_141.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_10.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_11.n_124.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_11.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_12.n_92.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_12.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_13.n_90.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_13.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_14.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_15.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_1.n_532.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_1.n_532.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_2.n_315.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_2.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_3.n_265.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_3.n_265.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_4.n_233.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_4.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_5.n_227.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_5.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_6.n_212.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_6.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_7.n_179.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_7.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_8.n_167.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_8.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_9.n_158.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ZNF567-HepG2-ENCSR231NMZ.bestfold.profile.pattern_9.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_0.n_3068.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_0.n_3068.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_10.n_243.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_10.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_11.n_237.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_11.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_12.n_154.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_12.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_13.n_60.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_13.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_1.n_1796.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_1.n_1796.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_2.n_1485.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_2.n_1485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_3.n_1169.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_3.n_1169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_4.n_1149.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_4.n_1149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_5.n_904.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_5.n_904.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_6.n_756.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_6.n_756.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_7.n_405.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_7.n_405.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_8.n_336.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_8.n_336.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_9.n_295.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-HepG2-ENCSR808FFI.bestfold.profile.pattern_9.n_295.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_0.n_3282.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_0.n_3282.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_10.n_102.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_10.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_11.n_93.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_11.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_12.n_80.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_12.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_13.n_79.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_13.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_14.n_69.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_14.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_15.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_16.n_58.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_16.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_17.n_56.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_17.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_18.n_54.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_18.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_19.n_50.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_19.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_1.n_2357.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_1.n_2357.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_20.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_21.n_31.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_21.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_22.n_29.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_22.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_23.n_24.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_23.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_2.n_798.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_2.n_798.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_3.n_384.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_3.n_384.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_4.n_212.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_4.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_5.n_141.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_5.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_6.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_7.n_116.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_7.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_8.n_105.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_8.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_9.n_104.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR448UKK.bestfold.profile.pattern_9.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_0.n_629.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_0.n_629.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_10.n_55.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_10.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_11.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_12.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_13.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_1.n_311.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_1.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_2.n_306.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_2.n_306.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_3.n_261.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_3.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_4.n_139.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_4.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_5.n_122.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_5.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_6.n_111.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_6.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_7.n_108.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_7.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_8.n_102.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_8.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_9.n_92.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-K562-ENCSR755CRA.bestfold.profile.pattern_9.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_0.n_1004.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_0.n_1004.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_1.n_538.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_1.n_538.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_2.n_191.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_2.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_3.n_182.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_3.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_4.n_168.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_4.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_5.n_154.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_5.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_6.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_7.n_130.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_7.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_8.n_87.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_8.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZKSCAN8-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_9.n_54.PWM.meme motif-alignments-all-vs-all/ZKSCAN8/ZKSCAN8-201-vs-ZKSCAN8-WTC11-ENCSR115QIT.bestfold.profile.pattern_9.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_0.n_376.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_0.n_376.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_10.n_67.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_10.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_11.n_66.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_11.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_12.n_65.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_12.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_13.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_14.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_15.n_34.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_15.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_16.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_1.n_154.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_1.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_2.n_141.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_2.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_3.n_141.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_3.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_4.n_124.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_4.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_5.n_112.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_5.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_6.n_95.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_6.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_7.n_95.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_7.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_8.n_73.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_8.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_9.n_67.PWM.meme motif-alignments-all-vs-all/ZNF565/ZNF565-201-vs-ZNF565-SK-N-SH-ENCSR754ALX.bestfold.profile.pattern_9.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HEK526-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HEK526-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_0.n_1908.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_0.n_1908.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_10.n_256.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_10.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_11.n_247.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_11.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_12.n_240.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_12.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_13.n_188.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_13.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_14.n_177.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_14.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_15.n_149.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_15.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_16.n_137.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_16.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_17.n_130.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_17.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_18.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_19.n_45.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_19.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_1.n_975.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_1.n_975.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_20.n_34.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_20.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_21.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_2.n_634.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_2.n_634.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_3.n_446.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_3.n_446.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_4.n_428.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_4.n_428.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_5.n_368.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_5.n_368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_6.n_359.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_6.n_359.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_7.n_353.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_7.n_353.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_8.n_338.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_8.n_338.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_9.n_309.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ZNF564-HepG2-ENCSR397EOT.bestfold.profile.pattern_9.n_309.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_0.n_2170.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_0.n_2170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_10.n_190.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_10.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_11.n_104.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_11.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_12.n_73.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_12.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_13.n_69.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_13.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_14.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_15.n_64.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_15.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_16.n_59.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_16.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_17.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_18.n_36.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_18.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_19.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_1.n_2101.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_1.n_2101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_20.n_34.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_20.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_21.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_22.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_2.n_1219.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_2.n_1219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_3.n_773.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_3.n_773.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_4.n_769.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_4.n_769.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_5.n_625.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_5.n_625.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_6.n_412.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_6.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_7.n_384.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_7.n_384.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_8.n_371.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_8.n_371.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_9.n_330.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_9.n_330.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HEK525-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_0.n_2170.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_0.n_2170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_10.n_190.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_10.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_11.n_104.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_11.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_12.n_73.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_12.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_13.n_69.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_13.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_14.n_67.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_14.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_15.n_64.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_15.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_16.n_59.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_16.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_17.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_18.n_36.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_18.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_19.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_1.n_2101.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_1.n_2101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_20.n_34.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_20.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_21.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_22.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_2.n_1219.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_2.n_1219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_3.n_773.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_3.n_773.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_4.n_769.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_4.n_769.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_5.n_625.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_5.n_625.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_6.n_412.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_6.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_7.n_384.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_7.n_384.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_8.n_371.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_8.n_371.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_9.n_330.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-ZNF563-HepG2-ENCSR977FRK.bestfold.profile.pattern_9.n_330.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_0.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_10.n_56.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_10.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_11.n_52.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_11.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_12.n_52.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_12.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_13.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_14.n_40.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_14.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_16.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_1.n_163.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_1.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_2.n_117.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_2.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_3.n_112.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_3.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_4.n_104.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_4.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_5.n_98.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_5.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_6.n_97.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_6.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_7.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_8.n_79.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_8.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_9.n_59.PWM.meme motif-alignments-all-vs-all/ZNF562/ZNF562-202-vs-ZNF562-HepG2-ENCSR727IJD.bestfold.profile.pattern_9.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_0.n_2508.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_0.n_2508.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_10.n_117.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_10.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_11.n_116.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_11.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_12.n_101.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_12.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_13.n_76.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_13.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_14.n_35.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_14.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_15.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_1.n_2112.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_1.n_2112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_2.n_1511.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_2.n_1511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_3.n_1429.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_3.n_1429.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_4.n_571.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_4.n_571.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_5.n_507.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_5.n_507.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_6.n_366.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_6.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_7.n_247.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_7.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_8.n_162.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_8.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_9.n_155.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-HEK293-ENCSR125ULS.bestfold.profile.pattern_9.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_0.n_224.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_0.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_10.n_67.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_10.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_11.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_12.n_62.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_12.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_13.n_56.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_13.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_15.n_36.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_15.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_16.n_31.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_16.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_17.n_31.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_17.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_18.n_28.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_18.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_19.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_1.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_20.n_25.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_20.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_21.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_22.n_20.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_22.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_2.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_3.n_100.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_3.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_4.n_95.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_4.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_5.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_6.n_75.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_6.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_7.n_74.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_7.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_8.n_72.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_8.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all/ZNF561/ZNF561-201-vs-ZNF561-K562-ENCSR350GZC.bestfold.profile.pattern_9.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_0.n_2825.PWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_0.n_2825.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_1.n_334.PWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_1.n_334.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_2.n_106.PWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_2.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_3.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF560-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZNF560/ZNF560-201-vs-ZNF560-HEK293-ENCSR538RDA.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_0.n_2616.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_0.n_2616.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_10.n_60.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_10.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_11.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_12.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_1.n_224.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_1.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_2.n_189.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_2.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_3.n_169.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_3.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_4.n_167.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_4.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_5.n_125.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_5.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_6.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_7.n_94.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_7.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_8.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_9.n_70.PWM.meme motif-alignments-all-vs-all/ZNF215/ZNF215-201-vs-ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_9.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_0.n_590.PWM.meme motif-alignments-all-vs-all/ZNF214/ZNF214-201-vs-ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_0.n_590.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_1.n_271.PWM.meme motif-alignments-all-vs-all/ZNF214/ZNF214-201-vs-ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_1.n_271.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_2.n_258.PWM.meme motif-alignments-all-vs-all/ZNF214/ZNF214-201-vs-ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_2.n_258.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_0.n_4115.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_0.n_4115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_10.n_174.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_10.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_11.n_171.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_11.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_12.n_167.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_12.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_13.n_156.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_13.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_14.n_152.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_14.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_15.n_92.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_15.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_16.n_81.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_16.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_17.n_77.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_17.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_18.n_69.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_18.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_19.n_67.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_19.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_1.n_2167.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_1.n_2167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_20.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_21.n_49.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_21.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_22.n_42.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_22.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_23.n_42.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_23.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_24.n_37.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_24.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_25.n_33.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_25.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_26.n_31.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_26.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_27.n_31.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_27.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_28.n_28.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_28.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_29.n_27.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_29.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_2.n_2125.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_2.n_2125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_3.n_1648.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_3.n_1648.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_4.n_1388.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_4.n_1388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_5.n_1022.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_5.n_1022.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_6.n_1011.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_6.n_1011.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_7.n_563.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_7.n_563.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_8.n_351.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_8.n_351.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_9.n_265.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-GM12878-ENCSR764CZW.bestfold.profile.pattern_9.n_265.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_0.n_8301.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_0.n_8301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_10.n_408.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_10.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_11.n_388.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_11.n_388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_12.n_382.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_12.n_382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_13.n_299.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_13.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_14.n_282.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_14.n_282.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_15.n_212.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_15.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_16.n_196.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_16.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_17.n_158.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_17.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_18.n_134.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_18.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_19.n_115.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_19.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_1.n_3255.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_1.n_3255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_20.n_97.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_20.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_21.n_38.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_21.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_22.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_23.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_24.n_24.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_24.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_2.n_2573.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_2.n_2573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_3.n_1857.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_3.n_1857.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_4.n_1747.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_4.n_1747.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_5.n_1643.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_5.n_1643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_6.n_1040.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_6.n_1040.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_7.n_978.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_7.n_978.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_8.n_716.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_8.n_716.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_9.n_686.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_9.n_686.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_0.n_118.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_0.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_10.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_1.n_36.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_1.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_3.n_29.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_3.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_5.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_7.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_8.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-K562-ENCSR841GLE.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_0.n_3894.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_0.n_3894.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_10.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_11.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_12.n_38.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_12.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_13.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_14.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_15.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_1.n_1947.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_1.n_1947.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_2.n_1897.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_2.n_1897.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_3.n_1449.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_3.n_1449.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_4.n_1072.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_4.n_1072.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_5.n_1034.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_5.n_1034.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_6.n_838.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_6.n_838.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_7.n_611.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_7.n_611.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_8.n_394.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_8.n_394.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_9.n_273.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR000EWU.bestfold.profile.pattern_9.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_0.n_5455.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_0.n_5455.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_10.n_499.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_10.n_499.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_11.n_474.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_11.n_474.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_12.n_386.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_12.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_13.n_372.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_13.n_372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_14.n_367.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_14.n_367.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_15.n_339.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_15.n_339.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_16.n_328.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_16.n_328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_17.n_252.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_17.n_252.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_18.n_249.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_18.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_19.n_235.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_19.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_1.n_4007.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_1.n_4007.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_20.n_171.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_20.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_21.n_116.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_21.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_22.n_45.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_22.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_23.n_43.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_23.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_2.n_1979.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_2.n_1979.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_3.n_1801.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_3.n_1801.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_4.n_1755.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_4.n_1755.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_5.n_1592.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_5.n_1592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_6.n_1078.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_6.n_1078.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_7.n_836.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_7.n_836.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_8.n_775.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_8.n_775.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_9.n_718.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR465XQW.bestfold.profile.pattern_9.n_718.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_0.n_1278.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_0.n_1278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_1.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_3.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all/ZNF217/ZNF217-201-vs-ZNF217-MCF-7-ENCSR912ATU.bestfold.profile.pattern_4.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_0.n_7781.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_0.n_7781.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_10.n_173.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_10.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_11.n_140.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_11.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_12.n_132.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_12.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_13.n_102.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_13.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_14.n_81.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_14.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_15.n_71.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_15.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_16.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_17.n_34.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_17.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_1.n_3489.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_1.n_3489.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_2.n_3119.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_2.n_3119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_3.n_2940.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_3.n_2940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_4.n_2442.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_4.n_2442.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_5.n_1828.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_5.n_1828.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_6.n_931.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_6.n_931.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_7.n_596.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_7.n_596.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_8.n_296.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_8.n_296.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_9.n_274.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-201-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_9.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_0.n_7781.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_0.n_7781.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_10.n_173.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_10.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_11.n_140.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_11.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_12.n_132.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_12.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_13.n_102.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_13.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_14.n_81.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_14.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_15.n_71.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_15.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_16.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_17.n_34.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_17.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_1.n_3489.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_1.n_3489.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_2.n_3119.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_2.n_3119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_3.n_2940.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_3.n_2940.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_4.n_2442.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_4.n_2442.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_5.n_1828.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_5.n_1828.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_6.n_931.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_6.n_931.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_7.n_596.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_7.n_596.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_8.n_296.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_8.n_296.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF843-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_9.n_274.PWM.meme motif-alignments-all-vs-all/ZNF843/ZNF843-202-vs-ZNF843-HEK293-ENCSR502KPJ.bestfold.profile.pattern_9.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_0.n_1021.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_0.n_1021.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_1.n_121.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_1.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_2.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_3.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_4.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_5.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_6.n_56.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_6.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_7.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_8.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ZNF211-HEK383-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_0.n_515.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_0.n_515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_1.n_333.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_1.n_333.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_2.n_272.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_2.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_3.n_194.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_3.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_4.n_180.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_4.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_5.n_156.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_5.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_6.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_7.n_80.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_7.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF212/ZNF212-201-vs-ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_8.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HEK331-ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_0.n_98.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_0.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_10.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_11.n_67.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_11.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_12.n_65.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_12.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_13.n_59.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_13.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_14.n_57.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_14.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_15.n_56.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_15.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_16.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_17.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_18.n_53.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_18.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_19.n_52.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_19.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_1.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_20.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_21.n_45.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_21.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_22.n_43.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_22.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_23.n_38.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_23.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_24.n_37.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_24.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_25.n_36.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_25.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_26.n_33.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_26.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_27.n_33.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_27.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_28.n_30.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_28.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_29.n_24.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_29.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_2.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_30.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_3.n_85.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_3.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_4.n_82.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_4.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_5.n_81.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_5.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_7.n_80.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_7.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_8.n_75.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_8.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_9.n_74.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ZFP14-HepG2-ENCSR620DBD.bestfold.profile.pattern_9.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_0.n_23647.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_0.n_23647.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_10.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_11.n_61.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_11.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_12.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_1.n_2245.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_1.n_2245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_2.n_1583.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_2.n_1583.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_3.n_1379.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_3.n_1379.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_4.n_882.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_4.n_882.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_5.n_508.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_5.n_508.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_6.n_426.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_6.n_426.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_7.n_387.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_7.n_387.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_8.n_371.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_8.n_371.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_9.n_197.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK293-ENCSR482BBZ.bestfold.profile.pattern_9.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_10.n_477.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_10.n_477.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_11.n_449.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_11.n_449.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_12.n_446.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_12.n_446.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_13.n_430.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_13.n_430.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_14.n_402.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_14.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_15.n_396.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_15.n_396.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_16.n_388.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_16.n_388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_17.n_287.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_17.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_18.n_258.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_18.n_258.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_19.n_239.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_19.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_1.n_2129.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_1.n_2129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_20.n_237.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_20.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_21.n_233.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_21.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_22.n_225.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_22.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_23.n_202.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_23.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_24.n_127.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_24.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_25.n_109.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_25.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_26.n_108.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_26.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_27.n_80.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_27.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_28.n_59.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_28.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_2.n_1284.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_2.n_1284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_3.n_1123.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_3.n_1123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_4.n_1018.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_4.n_1018.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_5.n_1009.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_5.n_1009.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_6.n_775.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_6.n_775.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_7.n_602.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_7.n_602.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_8.n_553.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_8.n_553.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_9.n_521.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_9.n_521.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_0.n_6922.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_0.n_6922.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_10.n_724.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_10.n_724.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_11.n_638.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_11.n_638.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_12.n_585.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_12.n_585.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_13.n_537.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_13.n_537.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_14.n_502.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_14.n_502.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_15.n_488.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_15.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_16.n_380.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_16.n_380.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_17.n_368.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_17.n_368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_18.n_303.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_18.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_19.n_296.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_19.n_296.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_1.n_4388.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_1.n_4388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_20.n_231.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_20.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_21.n_228.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_21.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_22.n_158.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_22.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_23.n_152.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_23.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_24.n_122.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_24.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_25.n_50.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_25.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_26.n_37.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_26.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_27.n_35.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_27.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_28.n_31.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_28.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_29.n_24.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_29.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_2.n_4018.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_2.n_4018.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_30.n_21.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_30.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_3.n_3142.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_3.n_3142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_4.n_2864.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_4.n_2864.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_5.n_2623.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_5.n_2623.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_6.n_2125.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_6.n_2125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_7.n_2024.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_7.n_2024.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_8.n_1203.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_8.n_1203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF219-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_9.n_1084.PWM.meme motif-alignments-all-vs-all/ZNF219/ZNF219-201-vs-ZNF219-HepG2-ENCSR243BPI.bestfold.profile.pattern_9.n_1084.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ZNF846-HEK624-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_0.n_1777.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_0.n_1777.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_10.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_1.n_1514.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_1.n_1514.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_2.n_1498.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_2.n_1498.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_3.n_636.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_3.n_636.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_4.n_293.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_4.n_293.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_5.n_284.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_5.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_6.n_257.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_6.n_257.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_7.n_254.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_7.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_8.n_73.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_8.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_9.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB39/ZBTB39-201-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_9.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585B-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_0.n_5269.PWM.meme motif-alignments-all-vs-all/ZNF585B/ZNF585B-205-vs-ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_0.n_5269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585B-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_1.n_1141.PWM.meme motif-alignments-all-vs-all/ZNF585B/ZNF585B-205-vs-ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_1.n_1141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585B-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all/ZNF585B/ZNF585B-205-vs-ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_2.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HEK413-ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_0.n_229.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_0.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_1.n_189.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_1.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_2.n_177.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_2.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_3.n_164.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_3.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_4.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_5.n_68.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_5.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_6.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-HepG2-ENCSR752NDX.bestfold.profile.pattern_7.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_0.n_620.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_0.n_620.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_10.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_11.n_84.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_11.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_12.n_83.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_12.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_13.n_75.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_13.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_14.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_16.n_31.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_16.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_17.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_18.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_1.n_303.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_1.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_2.n_136.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_2.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_3.n_121.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_3.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_4.n_115.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_4.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_5.n_112.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_5.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_6.n_111.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_6.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_8.n_105.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_8.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR229KXQ.bestfold.profile.pattern_9.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_0.n_4281.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_0.n_4281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_1.n_2044.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_1.n_2044.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_2.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_3.n_643.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_3.n_643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_4.n_133.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_4.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_5.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_6.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_7.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_8.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_0.n_2425.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_0.n_2425.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_10.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_10.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_11.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_11.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_12.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_12.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_13.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_14.n_33.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_14.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_15.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_16.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_16.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_1.n_1374.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_1.n_1374.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_2.n_1271.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_2.n_1271.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_3.n_846.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_3.n_846.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_4.n_429.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_4.n_429.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_5.n_178.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_5.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_6.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_7.n_126.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_7.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_8.n_122.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_8.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZBTB37/ZBTB37-201-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_9.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HEK412-Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_0.n_7514.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_0.n_7514.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_10.n_189.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_10.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_11.n_178.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_11.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_12.n_169.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_12.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_13.n_158.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_13.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_14.n_158.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_14.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_15.n_139.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_15.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_16.n_67.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_16.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_17.n_62.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_17.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_18.n_32.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_18.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_19.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_1.n_3375.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_1.n_3375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_2.n_2165.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_2.n_2165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_3.n_1425.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_3.n_1425.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_4.n_1240.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_4.n_1240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_5.n_922.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_5.n_922.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_6.n_507.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_6.n_507.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_7.n_376.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_7.n_376.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_8.n_238.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_8.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_9.n_219.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-HepG2-ENCSR403MJY.bestfold.profile.pattern_9.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_0.n_9396.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_0.n_9396.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_10.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_11.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_12.n_60.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_12.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_13.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_14.n_53.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_14.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_15.n_51.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_15.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_16.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_17.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_18.n_41.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_18.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_1.n_7071.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_1.n_7071.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_20.n_30.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_20.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_21.n_29.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_21.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_22.n_29.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_22.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_23.n_27.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_23.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_24.n_22.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_24.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_25.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_2.n_2454.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_2.n_2454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_3.n_1390.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_3.n_1390.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_4.n_1142.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_4.n_1142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_5.n_397.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_5.n_397.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_6.n_388.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_6.n_388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_7.n_200.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_7.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_8.n_128.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_8.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_9.n_96.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_9.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_1.n_698.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_1.n_698.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_2.n_399.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_2.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_3.n_389.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_3.n_389.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_4.n_378.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_4.n_378.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_5.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_6.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_7.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-ZNF281-WTC11-ENCSR032DGZ.bestfold.profile.pattern_9.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-201-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-204-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_0.n_908.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_10.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_11.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_12.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_13.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_14.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_15.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_16.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_17.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_18.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_19.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_1.n_664.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_2.n_510.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_3.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_4.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_5.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_6.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_7.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_8.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF827-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.PWM.meme motif-alignments-all-vs-all/ZNF827/ZNF827-207-vs-ZNF827-HepG2-ENCSR148FHD.bestfold.profile.pattern_9.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_0.n_3667.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_0.n_3667.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_10.n_378.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_10.n_378.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_11.n_362.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_11.n_362.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_12.n_332.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_12.n_332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_13.n_312.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_13.n_312.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_14.n_255.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_14.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_15.n_242.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_15.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_16.n_210.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_16.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_17.n_183.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_17.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_18.n_139.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_18.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_19.n_102.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_19.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_1.n_3546.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_1.n_3546.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_20.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_21.n_40.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_21.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_22.n_25.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_22.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_23.n_20.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_23.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_2.n_3426.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_2.n_3426.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_3.n_1769.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_3.n_1769.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_4.n_1289.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_4.n_1289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_5.n_824.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_5.n_824.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_6.n_803.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_6.n_803.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_7.n_734.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_7.n_734.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_8.n_622.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_8.n_622.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_9.n_497.PWM.meme motif-alignments-all-vs-all/IKZF5/IKZF5-201-vs-IKZF5-HepG2-ENCSR210HBN.bestfold.profile.pattern_9.n_497.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_0.n_1615.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_0.n_1615.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_10.n_86.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_10.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_11.n_66.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_11.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_12.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_1.n_1129.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_1.n_1129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_2.n_455.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_2.n_455.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_3.n_349.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_3.n_349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_4.n_329.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_4.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_5.n_312.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_5.n_312.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_6.n_284.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_6.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_7.n_269.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_7.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_8.n_264.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_8.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_9.n_161.PWM.meme motif-alignments-all-vs-all/IKZF4/IKZF4-201-vs-IKZF4-HepG2-ENCSR799DUB.bestfold.profile.pattern_9.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_0.n_3465.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_10.n_514.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_11.n_470.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_12.n_456.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_13.n_444.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_14.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_15.n_390.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_16.n_368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_17.n_365.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_18.n_340.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_19.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_1.n_3383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_20.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_21.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_22.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_23.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_24.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_25.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_26.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_27.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_28.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_29.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_2.n_1706.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_30.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_31.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_32.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_33.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_34.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_3.n_1550.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_4.n_1540.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_5.n_1368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_6.n_896.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_7.n_628.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_8.n_542.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK293-ENCSR304AMN.bestfold.profile.pattern_9.n_534.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-2/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_0.n_220.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_0.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_1.n_137.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_1.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_2.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_3.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_4.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_5.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HEK293-ENCSR497IAS.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_0.n_4084.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_0.n_4084.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_10.n_169.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_10.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_11.n_151.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_11.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_12.n_137.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_12.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_13.n_113.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_13.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_14.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_15.n_43.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_15.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_16.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_17.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_1.n_1470.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_1.n_1470.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_2.n_1101.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_2.n_1101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_3.n_666.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_3.n_666.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_4.n_480.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_4.n_480.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_5.n_380.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_5.n_380.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_6.n_356.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_6.n_356.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_7.n_338.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_7.n_338.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_8.n_328.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_8.n_328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_9.n_179.PWM.meme motif-alignments-all-vs-all/ZNF747/ZNF747-203-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_9.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_0.n_1618.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_0.n_1618.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_10.n_198.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_10.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_11.n_190.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_11.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_12.n_132.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_12.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_13.n_114.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_13.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_14.n_102.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_14.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_15.n_91.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_15.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_16.n_66.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_16.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_17.n_33.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_17.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_18.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_1.n_1370.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_1.n_1370.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_2.n_1016.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_2.n_1016.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_3.n_727.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_3.n_727.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_4.n_399.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_4.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_5.n_399.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_5.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_6.n_297.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_6.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_7.n_247.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_7.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_8.n_242.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_8.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF746-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_9.n_201.PWM.meme motif-alignments-all-vs-all/ZNF746/ZNF746-201-vs-ZNF746-HepG2-ENCSR591MYB.bestfold.profile.pattern_9.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_0.n_8412.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_0.n_8412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_10.n_235.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_10.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_11.n_104.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_11.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_12.n_77.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_12.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_1.n_5833.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_1.n_5833.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_2.n_4596.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_2.n_4596.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_3.n_2223.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_3.n_2223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_4.n_784.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_4.n_784.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_5.n_757.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_5.n_757.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_6.n_546.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_6.n_546.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_7.n_466.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_7.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_8.n_351.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_8.n_351.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_9.n_315.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HEK293-ENCSR351NON.bestfold.profile.pattern_9.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_0.n_15291.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_0.n_15291.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_10.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_11.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_12.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_1.n_2944.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_1.n_2944.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_2.n_1738.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_2.n_1738.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_3.n_703.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_3.n_703.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_4.n_505.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_4.n_505.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_5.n_341.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_5.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_6.n_305.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_6.n_305.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_7.n_161.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_7.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_8.n_156.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_8.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_9.n_114.PWM.meme motif-alignments-all-vs-all/ZNF629/ZNF629-201-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_9.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_0.n_2890.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_0.n_2890.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_10.n_160.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_10.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_11.n_28.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_11.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_1.n_1233.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_1.n_1233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_2.n_254.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_2.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_3.n_253.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_3.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_4.n_238.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_4.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_5.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_6.n_196.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_6.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_7.n_182.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_7.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_8.n_174.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_8.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_9.n_171.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-HepG2-ENCSR755ZAY.bestfold.profile.pattern_9.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_0.n_3154.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_0.n_3154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_1.n_1083.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_1.n_1083.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_2.n_936.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_2.n_936.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_3.n_249.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_3.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_4.n_183.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_4.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_5.n_141.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_5.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_6.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_7.n_124.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_7.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_8.n_90.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_8.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR427XYP.bestfold.profile.pattern_9.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_0.n_2115.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_0.n_2115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_10.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_11.n_59.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_11.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_12.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_13.n_57.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_13.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_14.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_1.n_334.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_1.n_334.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_2.n_244.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_2.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_3.n_234.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_3.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_4.n_195.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_4.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_5.n_184.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_5.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_6.n_130.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_6.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_7.n_129.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_7.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_8.n_92.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_8.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_9.n_82.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR532EMP.bestfold.profile.pattern_9.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_0.n_3156.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_0.n_3156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_1.n_208.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_1.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_2.n_149.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_2.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_3.n_141.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_3.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_4.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_5.n_91.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_5.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_6.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF740/ZNF740-201-vs-ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_0.n_972.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_0.n_972.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_10.n_84.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_10.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_11.n_62.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_11.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_12.n_57.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_12.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_13.n_50.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_13.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_14.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_15.n_36.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_15.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_16.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_1.n_554.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_1.n_554.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_2.n_346.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_2.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_3.n_322.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_3.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_4.n_236.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_4.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_5.n_168.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_5.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_6.n_148.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_6.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_7.n_143.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_7.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_8.n_124.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_8.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_9.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_0.n_310.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_0.n_310.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_1.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_2.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_3.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_4.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_5.n_33.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_5.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_6.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZNF624/ZNF624-201-vs-ZNF624-HEK293-ENCSR878DES.bestfold.profile.pattern_7.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_0.n_319.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_0.n_319.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_10.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_11.n_31.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_11.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_12.n_28.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_12.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_13.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_14.n_24.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_14.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_16.n_22.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_16.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_17.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_18.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_1.n_184.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_1.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_2.n_143.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_2.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_3.n_105.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_3.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_4.n_80.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_4.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_6.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_7.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_8.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/ZNF626/ZNF626-204-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_9.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_0.n_276.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_0.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_1.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_2.n_81.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_2.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_3.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_4.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK293-ENCSR858FAN.bestfold.profile.pattern_7.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_0.n_1270.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_0.n_1270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_10.n_244.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_10.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_11.n_237.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_11.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_12.n_171.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_12.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_13.n_163.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_13.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_14.n_140.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_14.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_15.n_121.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_15.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_16.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_17.n_111.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_17.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_18.n_102.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_18.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_19.n_96.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_19.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_1.n_550.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_1.n_550.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_20.n_95.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_20.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_21.n_85.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_21.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_22.n_68.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_22.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_23.n_58.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_23.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_24.n_54.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_24.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_25.n_48.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_25.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_26.n_31.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_26.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_2.n_545.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_2.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_3.n_436.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_3.n_436.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_4.n_414.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_4.n_414.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_5.n_399.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_5.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_6.n_378.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_6.n_378.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_7.n_319.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_7.n_319.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_8.n_282.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_8.n_282.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_9.n_280.PWM.meme motif-alignments-all-vs-all/ZNF749/ZNF749-201-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_9.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_0.n_6133.PWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_0.n_6133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_1.n_5926.PWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_1.n_5926.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_2.n_246.PWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_2.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_3.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_4.n_94.PWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_4.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_5.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all/ZNF623/ZNF623-201-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_6.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_0.n_133.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_0.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_1.n_126.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_1.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_2.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_3.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_4.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_5.n_50.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_5.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_6.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_7.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_8.n_40.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_8.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF518B-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF518B/ZNF518B-201-vs-ZNF518B-K562-ENCSR597CHL.bestfold.profile.pattern_9.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_0.n_6522.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_0.n_6522.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_1.n_4915.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_1.n_4915.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_2.n_2085.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_2.n_2085.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_3.n_1244.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_3.n_1244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_4.n_272.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_4.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_5.n_172.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_5.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_6.n_171.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_6.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_7.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_8.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF518A/ZNF518A-202-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_0.n_953.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_0.n_953.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_10.n_71.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_10.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_11.n_67.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_11.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_12.n_65.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_12.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_13.n_63.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_13.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_14.n_58.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_14.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_15.n_53.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_15.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_16.n_51.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_16.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_17.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_18.n_24.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_18.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_19.n_20.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_19.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_1.n_392.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_1.n_392.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_2.n_158.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_2.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_3.n_121.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_3.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_4.n_117.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_4.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_5.n_105.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_5.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_6.n_96.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_6.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_7.n_87.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_7.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_8.n_86.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_8.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_9.n_71.PWM.meme motif-alignments-all-vs-all/ZNF488/ZNF488-201-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_9.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_1.n_169.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_1.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_2.n_101.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_2.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_3.n_85.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_3.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-201-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_1.n_169.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_1.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_2.n_101.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_2.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_3.n_85.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_3.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF521/ZNF521-202-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_0.n_1595.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_0.n_1595.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_10.n_164.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_10.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_11.n_162.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_11.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_12.n_143.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_12.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_13.n_127.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_13.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_14.n_97.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_14.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_15.n_87.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_15.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_16.n_85.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_16.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_17.n_75.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_17.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_18.n_71.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_18.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_19.n_60.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_19.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_1.n_1084.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_1.n_1084.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_20.n_34.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_20.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_21.n_28.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_21.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_2.n_647.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_2.n_647.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_3.n_380.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_3.n_380.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_4.n_233.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_4.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_5.n_224.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_5.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_6.n_205.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_6.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_7.n_188.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_7.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_8.n_169.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_8.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_9.n_167.PWM.meme motif-alignments-all-vs-all/ZNF527/ZNF527-201-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_9.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_0.n_1103.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_0.n_1103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_1.n_989.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_1.n_989.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_2.n_875.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_2.n_875.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_3.n_861.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_3.n_861.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_4.n_304.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_4.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_5.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_6.n_150.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_6.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF526/ZNF526-201-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_0.n_1165.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_0.n_1165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_10.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_11.n_61.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_11.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_12.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_13.n_57.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_13.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_14.n_46.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_14.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_15.n_45.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_15.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_16.n_43.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_16.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_17.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_18.n_28.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_18.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_19.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_1.n_606.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_1.n_606.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_20.n_26.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_20.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_2.n_590.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_2.n_590.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_3.n_214.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_3.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_4.n_205.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_4.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_5.n_203.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_5.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_6.n_194.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_6.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_7.n_179.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_7.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_8.n_118.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_8.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZNF529/ZNF529-209-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_9.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HEK489-ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_0.n_2464.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_0.n_2464.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_10.n_289.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_10.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_11.n_277.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_11.n_277.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_12.n_262.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_12.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_13.n_162.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_13.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_14.n_132.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_14.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_15.n_110.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_15.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_16.n_99.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_16.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_17.n_80.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_17.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_18.n_75.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_18.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_19.n_63.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_19.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_1.n_1625.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_1.n_1625.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_20.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_2.n_1428.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_2.n_1428.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_3.n_1382.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_3.n_1382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_4.n_806.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_4.n_806.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_5.n_607.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_5.n_607.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_6.n_513.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_6.n_513.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_7.n_432.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_7.n_432.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_8.n_423.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_8.n_423.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_9.n_303.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_9.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HEK490-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_0.n_213.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_0.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_10.n_68.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_10.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_1.n_183.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_1.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_2.n_167.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_2.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_3.n_149.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_3.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_4.n_146.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_4.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_5.n_132.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_5.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_6.n_125.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_6.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_7.n_85.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_7.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_8.n_79.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_8.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_9.n_71.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_9.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HEK491-ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_0.n_1203.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_0.n_1203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_10.n_50.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_10.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_11.n_46.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_11.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_1.n_1193.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_1.n_1193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_2.n_910.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_2.n_910.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_3.n_479.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_3.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_4.n_303.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_4.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_5.n_233.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_5.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_6.n_218.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_6.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_7.n_170.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_7.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_8.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_9.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_0.n_1250.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_0.n_1250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_1.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_0.n_611.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_0.n_611.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_10.n_217.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_10.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_11.n_215.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_11.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_12.n_210.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_12.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_13.n_173.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_13.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_14.n_150.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_14.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_15.n_142.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_15.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_16.n_124.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_16.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_17.n_121.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_17.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_18.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_19.n_75.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_19.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_1.n_388.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_1.n_388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_20.n_73.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_20.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_21.n_60.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_21.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_22.n_52.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_22.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_23.n_48.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_23.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_2.n_387.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_2.n_387.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_3.n_381.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_3.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_4.n_319.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_4.n_319.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_5.n_305.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_5.n_305.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_6.n_275.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_6.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_7.n_267.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_7.n_267.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_8.n_256.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_8.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_9.n_246.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-HepG2-ENCSR910MUD.bestfold.profile.pattern_9.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_0.n_621.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_0.n_621.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_10.n_92.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_10.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_11.n_87.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_11.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_12.n_84.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_12.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_13.n_83.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_13.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_14.n_73.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_14.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_15.n_64.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_15.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_16.n_61.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_16.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_17.n_59.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_17.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_18.n_55.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_18.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_19.n_45.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_19.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_1.n_407.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_1.n_407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_20.n_25.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_20.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_21.n_24.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_21.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_22.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_2.n_294.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_2.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_3.n_206.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_3.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_4.n_172.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_4.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_5.n_135.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_5.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_6.n_122.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_6.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_7.n_107.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_7.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_8.n_106.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_8.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_9.n_94.PWM.meme motif-alignments-all-vs-all/ZNF138/ZNF138-201-vs-ZNF138-WTC11-ENCSR373KKV.bestfold.profile.pattern_9.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_0.n_46.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_0.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_1.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK293-ENCSR138RCE.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_0.n_3012.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_0.n_3012.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_10.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_11.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_12.n_30.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_12.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_13.n_30.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_13.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_1.n_1578.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_1.n_1578.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_2.n_1271.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_2.n_1271.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_3.n_708.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_3.n_708.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_4.n_419.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_4.n_419.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_5.n_182.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_5.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_6.n_173.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_6.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_7.n_135.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_7.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_8.n_129.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_8.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_9.n_94.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK293-ENCSR283MWQ.bestfold.profile.pattern_9.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-HEK357-ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_0.n_475.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_0.n_475.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_11.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_1.n_157.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_1.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_2.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_3.n_107.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_3.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_4.n_72.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_4.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_5.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_6.n_62.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_6.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_7.n_47.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_7.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_8.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_9.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-HEK358-Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_0.n_1820.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_0.n_1820.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_10.n_47.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_10.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_11.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_12.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_13.n_27.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_13.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_14.n_24.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_14.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_1.n_1732.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_1.n_1732.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_2.n_374.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_2.n_374.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_3.n_338.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_3.n_338.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_4.n_314.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_4.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_5.n_103.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_5.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_6.n_101.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_6.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_7.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_8.n_90.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_8.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_9.n_87.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_9.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_197.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_100.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_97.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_94.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_93.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_69.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_15.n_64.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_15.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_16.n_60.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_16.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_17.n_58.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_17.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_18.n_54.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_18.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_19.n_52.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_19.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_161.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_20.n_49.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_20.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_21.n_47.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_21.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_22.n_46.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_22.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_23.n_44.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_23.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_24.n_44.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_24.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_25.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_26.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_27.n_29.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_27.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_28.n_27.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_28.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_29.n_20.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_29.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_148.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_30.n_20.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_30.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_137.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_128.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_120.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_119.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_115.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_112.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK360-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_10.n_125.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_10.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_11.n_123.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_11.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_12.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_13.n_116.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_13.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_14.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_15.n_98.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_15.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_16.n_64.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_16.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_17.n_59.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_17.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_18.n_42.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_18.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_19.n_33.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_19.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_361.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_20.n_27.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_20.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_21.n_26.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_21.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_22.n_23.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_22.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_23.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_327.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_246.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_4.n_222.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_4.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_5.n_188.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_5.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_6.n_188.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_6.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_0.n_270.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_0.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_1.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_2.n_101.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_2.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_3.n_86.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_3.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_4.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-HEK293-ENCSR096LSN.bestfold.profile.pattern_5.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_0.n_2506.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_0.n_2506.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_10.n_97.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_10.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_11.n_97.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_11.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_12.n_83.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_12.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_13.n_82.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_13.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_14.n_71.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_14.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_15.n_60.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_15.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_16.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_17.n_36.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_17.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_18.n_35.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_18.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_1.n_1573.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_1.n_1573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_2.n_285.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_2.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_3.n_264.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_3.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_4.n_262.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_4.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_5.n_219.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_5.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_6.n_176.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_6.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_7.n_142.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_7.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_8.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZNF311/ZNF311-203-vs-ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_9.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_0.n_12336.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_0.n_12336.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_10.n_91.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_10.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_11.n_80.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_11.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_12.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_14.n_24.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_14.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_15.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_1.n_4754.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_1.n_4754.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_2.n_2079.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_2.n_2079.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_3.n_602.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_3.n_602.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_4.n_516.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_4.n_516.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_5.n_492.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_5.n_492.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_6.n_288.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_6.n_288.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_7.n_214.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_7.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_8.n_151.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_8.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_9.n_101.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR167KBO.bestfold.profile.pattern_9.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_0.n_14799.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_0.n_14799.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_10.n_143.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_10.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_11.n_139.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_11.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_12.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_13.n_112.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_13.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_14.n_109.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_14.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_15.n_107.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_15.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_16.n_64.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_16.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_17.n_43.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_17.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_18.n_37.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_18.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_19.n_33.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_19.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_1.n_1035.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_1.n_1035.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_20.n_31.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_20.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_21.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_22.n_27.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_22.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_23.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_2.n_748.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_2.n_748.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_3.n_438.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_3.n_438.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_4.n_419.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_4.n_419.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_5.n_260.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_5.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_6.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_7.n_223.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_7.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_8.n_195.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_8.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_9.n_160.PWM.meme motif-alignments-all-vs-all/ZNF316/ZNF316-201-vs-ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_9.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_167.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_6.n_129.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_6.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_7.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK424-Hughes_NB_models_ZNF317.bestfold.profile.pattern_9.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_0.n_2164.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_0.n_2164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_10.n_529.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_10.n_529.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_11.n_516.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_11.n_516.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_12.n_512.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_12.n_512.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_13.n_499.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_13.n_499.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_14.n_496.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_14.n_496.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_15.n_460.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_15.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_16.n_412.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_16.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_17.n_400.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_17.n_400.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_18.n_396.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_18.n_396.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_19.n_377.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_19.n_377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_1.n_1170.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_1.n_1170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_20.n_374.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_20.n_374.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_21.n_360.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_21.n_360.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_22.n_347.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_22.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_23.n_343.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_23.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_24.n_322.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_24.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_25.n_278.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_25.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_26.n_262.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_26.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_27.n_249.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_27.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_28.n_229.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_28.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_29.n_223.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_29.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_2.n_828.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_2.n_828.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_30.n_207.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_30.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_31.n_202.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_31.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_32.n_195.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_32.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_33.n_158.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_33.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_34.n_158.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_34.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_35.n_123.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_35.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_36.n_120.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_36.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_37.n_72.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_37.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_38.n_56.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_38.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_39.n_55.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_39.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK425-Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_18.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HEK426-ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_0.n_3051.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_0.n_3051.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_10.n_166.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_10.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_11.n_150.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_11.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_12.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_13.n_78.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_13.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_14.n_58.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_14.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_15.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_16.n_41.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_16.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_17.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_1.n_2763.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_1.n_2763.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_2.n_2172.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_2.n_2172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_3.n_1811.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_3.n_1811.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_4.n_939.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_4.n_939.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_5.n_415.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_5.n_415.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_6.n_358.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_6.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_7.n_310.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_7.n_310.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_8.n_296.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_8.n_296.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_9.n_266.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-HepG2-ENCSR016OHL.bestfold.profile.pattern_9.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_0.n_4509.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_0.n_4509.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_10.n_134.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_10.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_11.n_84.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_11.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_12.n_74.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_12.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_13.n_61.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_13.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_14.n_59.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_14.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_15.n_52.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_15.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_16.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_17.n_34.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_17.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_18.n_31.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_18.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_19.n_31.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_19.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_1.n_1908.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_1.n_1908.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_2.n_640.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_2.n_640.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_3.n_416.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_3.n_416.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_4.n_416.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_4.n_416.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_5.n_284.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_5.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_6.n_220.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_6.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_7.n_215.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_7.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_8.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_9.n_164.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_9.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_0.n_3526.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_0.n_3526.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_10.n_92.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_10.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_11.n_49.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_11.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_12.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_13.n_43.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_13.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_14.n_36.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_14.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_15.n_34.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_15.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_16.n_29.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_16.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_17.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_1.n_1439.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_1.n_1439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_2.n_1100.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_2.n_1100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_3.n_229.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_3.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_4.n_200.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_4.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_5.n_193.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_5.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_6.n_184.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_6.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_7.n_178.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_7.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_8.n_177.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_8.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_9.n_117.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ZNF317-WTC11-ENCSR795KRU.bestfold.profile.pattern_9.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_0.n_657.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_0.n_657.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_10.n_95.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_10.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_11.n_76.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_11.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_12.n_65.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_12.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_13.n_64.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_13.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_14.n_48.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_14.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_16.n_29.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_16.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_1.n_254.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_1.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_2.n_187.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_2.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_3.n_165.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_3.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_4.n_150.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_4.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_5.n_150.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_5.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_6.n_141.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_6.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_7.n_109.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_7.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_8.n_108.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_8.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF251-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_9.n_99.PWM.meme motif-alignments-all-vs-all/ZNF251/ZNF251-201-vs-ZNF251-HepG2-ENCSR605KVV.bestfold.profile.pattern_9.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_0.n_6347.PWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_0.n_6347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_1.n_251.PWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_1.n_251.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_2.n_167.PWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_2.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_3.n_156.PWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_3.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_4.n_96.PWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_4.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_5.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all/ZNF319/ZNF319-201-vs-ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_6.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_0.n_881.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_0.n_881.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_10.n_134.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_10.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_11.n_132.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_11.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_12.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_13.n_118.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_13.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_14.n_102.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_14.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_15.n_88.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_15.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_16.n_88.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_16.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_17.n_79.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_17.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_18.n_68.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_18.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_19.n_56.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_19.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_1.n_388.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_1.n_388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_20.n_55.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_20.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_2.n_276.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_2.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_3.n_226.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_3.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_4.n_222.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_4.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_5.n_218.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_5.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_6.n_207.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_6.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_7.n_179.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_7.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_8.n_163.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_8.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_9.n_153.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_9.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_1.n_160.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_1.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-201-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_5.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_0.n_881.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_0.n_881.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_10.n_134.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_10.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_11.n_132.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_11.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_12.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_13.n_118.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_13.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_14.n_102.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_14.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_15.n_88.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_15.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_16.n_88.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_16.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_17.n_79.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_17.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_18.n_68.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_18.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_19.n_56.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_19.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_1.n_388.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_1.n_388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_20.n_55.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_20.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_2.n_276.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_2.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_3.n_226.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_3.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_4.n_222.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_4.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_5.n_218.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_5.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_6.n_207.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_6.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_7.n_179.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_7.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_8.n_163.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_8.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_9.n_153.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-HepG2-ENCSR569GKR.bestfold.profile.pattern_9.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_1.n_160.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_1.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all/ZNF253/ZNF253-205-vs-ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_5.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK397-Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-HEK398-ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_0.n_1606.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_0.n_1606.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_10.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_11.n_79.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_11.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_12.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_13.n_55.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_13.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_14.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_15.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_16.n_38.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_16.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_17.n_37.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_17.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_18.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_1.n_1039.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_1.n_1039.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_2.n_436.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_2.n_436.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_3.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_4.n_127.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_4.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_5.n_119.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_5.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_6.n_92.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_6.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_7.n_91.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_7.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_8.n_90.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_8.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_9.n_87.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_9.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_0.n_510.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_0.n_510.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_10.n_124.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_10.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_11.n_110.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_11.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_12.n_86.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_12.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_13.n_57.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_13.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_14.n_49.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_14.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_15.n_43.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_15.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_16.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_17.n_31.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_17.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_18.n_21.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_18.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_1.n_441.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_1.n_441.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_2.n_436.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_2.n_436.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_3.n_297.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_3.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_4.n_296.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_4.n_296.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_5.n_294.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_5.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_6.n_235.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_6.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_7.n_218.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_7.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_8.n_204.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_8.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_9.n_203.PWM.meme motif-alignments-all-vs-all/ZNF256/ZNF256-201-vs-ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_9.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_0.n_461.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_0.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_10.n_105.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_10.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_11.n_85.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_11.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_12.n_33.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_12.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_13.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_1.n_318.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_1.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_2.n_316.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_2.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_3.n_196.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_3.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_4.n_160.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_4.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_5.n_153.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_5.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_6.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_7.n_133.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_7.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_8.n_127.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_8.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZBED5-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_9.n_127.PWM.meme motif-alignments-all-vs-all/ZBED5/ZBED5-202-vs-ZBED5-HepG2-ENCSR656SIB.bestfold.profile.pattern_9.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_10.n_373.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_10.n_373.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_12.n_101.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_12.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_13.n_76.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_13.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_17.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_874.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_874.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_862.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_862.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_742.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_742.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_697.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_697.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_502.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_502.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_7.n_490.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_7.n_490.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_8.n_406.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_8.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_9.n_402.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_9.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_0.n_3031.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_0.n_3031.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_10.n_208.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_10.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_11.n_205.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_11.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_12.n_149.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_12.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_13.n_27.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_13.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_1.n_2788.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_1.n_2788.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_2.n_1757.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_2.n_1757.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_3.n_1018.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_3.n_1018.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_4.n_991.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_4.n_991.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_5.n_568.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_5.n_568.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_6.n_556.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_6.n_556.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_7.n_464.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_7.n_464.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_8.n_311.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_8.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_9.n_218.PWM.meme motif-alignments-all-vs-all/ZNF556/ZNF556-201-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_9.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_0.n_760.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_0.n_760.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_10.n_272.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_10.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_11.n_260.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_11.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_12.n_254.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_12.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_13.n_161.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_13.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_14.n_123.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_14.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_15.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_1.n_752.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_1.n_752.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_2.n_457.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_2.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_3.n_355.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_3.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_4.n_339.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_4.n_339.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_5.n_322.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_5.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_6.n_316.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_6.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_7.n_312.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_7.n_312.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_8.n_299.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_8.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_9.n_290.PWM.meme motif-alignments-all-vs-all/ZNF557/ZNF557-201-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_9.n_290.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_0.n_6289.PWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_0.n_6289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_1.n_178.PWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_1.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_2.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_3.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all/ZNF555/ZNF555-201-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_4.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_0.n_1045.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_0.n_1045.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_10.n_153.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_10.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_11.n_146.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_11.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_12.n_142.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_12.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_13.n_132.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_13.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_14.n_126.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_14.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_15.n_114.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_15.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_16.n_109.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_16.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_17.n_86.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_17.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_18.n_83.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_18.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_19.n_78.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_19.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_1.n_925.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_1.n_925.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_20.n_68.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_20.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_21.n_68.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_21.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_22.n_66.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_22.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_23.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_2.n_665.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_2.n_665.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_3.n_280.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_3.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_4.n_280.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_4.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_5.n_233.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_5.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_6.n_229.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_6.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_7.n_210.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_7.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_8.n_182.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_8.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/ZNF552/ZNF552-201-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_9.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.PWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_0.n_333.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_0.n_333.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_1.n_262.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_1.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_2.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-HEK293-ENCSR604CNJ.bestfold.profile.pattern_3.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_0.n_560.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_0.n_560.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_10.n_61.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_10.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_11.n_58.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_11.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_12.n_55.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_12.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_13.n_49.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_13.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_14.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_15.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_1.n_425.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_1.n_425.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_2.n_287.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_2.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_3.n_236.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_3.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_4.n_199.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_4.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_5.n_96.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_5.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_6.n_95.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_6.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_8.n_81.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_8.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_9.n_63.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_9.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_0.n_3450.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_0.n_3450.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_10.n_114.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_10.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_12.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_13.n_86.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_13.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_14.n_82.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_14.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_15.n_38.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_15.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_1.n_2036.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_1.n_2036.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_2.n_1210.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_2.n_1210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_3.n_598.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_3.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_4.n_507.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_4.n_507.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_5.n_425.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_5.n_425.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_6.n_407.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_6.n_407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_7.n_370.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_7.n_370.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_8.n_240.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_8.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_9.n_162.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-201-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_9.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_0.n_3450.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_0.n_3450.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_10.n_114.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_10.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_12.n_89.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_12.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_13.n_86.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_13.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_14.n_82.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_14.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_15.n_38.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_15.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_1.n_2036.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_1.n_2036.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_2.n_1210.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_2.n_1210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_3.n_598.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_3.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_4.n_507.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_4.n_507.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_5.n_425.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_5.n_425.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_6.n_407.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_6.n_407.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_7.n_370.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_7.n_370.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_8.n_240.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_8.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF414-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_9.n_162.PWM.meme motif-alignments-all-vs-all/ZNF414/ZNF414-202-vs-ZNF414-HepG2-ENCSR224NQI.bestfold.profile.pattern_9.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_0.n_2891.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_0.n_2891.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_10.n_106.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_10.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_11.n_72.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_11.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_12.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_13.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_14.n_31.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_14.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_1.n_2085.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_1.n_2085.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_2.n_1808.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_2.n_1808.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_3.n_1493.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_3.n_1493.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_4.n_490.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_4.n_490.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_5.n_465.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_5.n_465.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_6.n_437.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_6.n_437.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_7.n_312.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_7.n_312.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_8.n_273.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_8.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_9.n_118.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_9.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_0.n_1020.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_0.n_1020.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_10.n_324.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_10.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_11.n_290.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_11.n_290.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_12.n_213.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_12.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_13.n_124.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_13.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_14.n_95.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_14.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_15.n_82.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_15.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_16.n_67.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_16.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_17.n_43.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_17.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_1.n_1019.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_1.n_1019.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_2.n_459.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_2.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_3.n_439.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_3.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_4.n_400.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_4.n_400.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_5.n_376.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_5.n_376.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_6.n_374.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_6.n_374.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_7.n_357.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_7.n_357.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_8.n_344.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_8.n_344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_9.n_332.PWM.meme motif-alignments-all-vs-all/ZNF558/ZNF558-201-vs-ZNF558-HepG2-ENCSR154YWK.bestfold.profile.pattern_9.n_332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_0.n_862.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_0.n_862.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_10.n_99.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_10.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_11.n_75.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_11.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_12.n_65.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_12.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_13.n_61.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_13.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_14.n_58.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_14.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_16.n_29.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_16.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_17.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_18.n_28.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_18.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_19.n_23.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_19.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_1.n_618.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_1.n_618.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_2.n_533.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_2.n_533.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_3.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_4.n_232.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_4.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_5.n_209.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_5.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_6.n_199.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_6.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_7.n_147.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_7.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_8.n_132.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_8.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_9.n_123.PWM.meme motif-alignments-all-vs-all/ZNF791/ZNF791-201-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_9.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_0.n_474.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_0.n_474.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_10.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_1.n_343.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_1.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_2.n_152.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_2.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_3.n_127.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_3.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_4.n_121.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_4.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_5.n_115.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_5.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_6.n_83.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_6.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_7.n_73.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_7.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_8.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_9.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_79.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_63.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ZNF169-HEK367-ChipExo_models_ZNF169.bestfold.profile.pattern_9.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_0.n_2827.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_0.n_2827.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_1.n_735.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_1.n_735.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_2.n_442.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_2.n_442.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_3.n_283.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_3.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_4.n_248.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_4.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_5.n_225.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_5.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_6.n_196.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_6.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_7.n_184.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_7.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_8.n_177.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_8.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_9.n_41.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_9.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_0.n_805.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_0.n_805.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_10.n_108.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_10.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_11.n_93.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_11.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_12.n_82.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_12.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_13.n_63.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_13.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_14.n_62.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_14.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_16.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_1.n_454.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_1.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_2.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_3.n_272.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_3.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_4.n_165.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_4.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_5.n_157.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_5.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_6.n_125.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_6.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_7.n_123.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_7.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_8.n_111.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_8.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_9.n_110.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_9.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_0.n_296.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_0.n_296.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_10.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_11.n_31.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_11.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_1.n_273.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_1.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_2.n_118.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_2.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_3.n_98.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_3.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_4.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_5.n_61.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_5.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_6.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_7.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_8.n_44.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_8.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_9.n_40.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_9.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_0.n_5331.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_0.n_5331.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_10.n_155.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_10.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_11.n_116.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_11.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_12.n_79.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_12.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_13.n_53.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_13.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_15.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_1.n_2464.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_1.n_2464.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_2.n_1782.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_2.n_1782.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_3.n_1760.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_3.n_1760.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_4.n_1277.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_4.n_1277.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_5.n_567.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_5.n_567.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_6.n_550.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_6.n_550.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_7.n_517.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_7.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_8.n_364.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_8.n_364.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_9.n_233.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_9.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_0.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_10.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_11.n_27.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_11.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_13.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_1.n_122.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_1.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_2.n_121.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_2.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_3.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_4.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_5.n_68.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_5.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_6.n_67.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_6.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_7.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_8.n_43.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_8.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_9.n_41.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_9.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_0.n_2827.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_0.n_2827.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_1.n_735.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_1.n_735.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_2.n_442.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_2.n_442.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_3.n_283.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_3.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_4.n_248.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_4.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_5.n_225.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_5.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_6.n_196.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_6.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_7.n_184.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_7.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_8.n_177.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_8.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_9.n_41.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK293-ENCSR707BNG.bestfold.profile.pattern_9.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_0.n_805.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_0.n_805.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_10.n_108.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_10.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_11.n_93.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_11.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_12.n_82.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_12.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_13.n_63.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_13.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_14.n_62.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_14.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_16.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_1.n_454.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_1.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_2.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_3.n_272.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_3.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_4.n_165.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_4.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_5.n_157.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_5.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_6.n_125.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_6.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_7.n_123.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_7.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_8.n_111.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_8.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_9.n_110.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-HepG2-ENCSR398TMP.bestfold.profile.pattern_9.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_0.n_296.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_0.n_296.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_10.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_11.n_31.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_11.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_1.n_273.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_1.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_2.n_118.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_2.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_3.n_98.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_3.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_4.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_5.n_61.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_5.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_6.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_7.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_8.n_44.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_8.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_9.n_40.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR307YJU.bestfold.profile.pattern_9.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_0.n_5331.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_0.n_5331.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_10.n_155.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_10.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_11.n_116.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_11.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_12.n_79.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_12.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_13.n_53.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_13.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_15.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_1.n_2464.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_1.n_2464.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_2.n_1782.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_2.n_1782.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_3.n_1760.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_3.n_1760.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_4.n_1277.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_4.n_1277.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_5.n_567.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_5.n_567.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_6.n_550.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_6.n_550.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_7.n_517.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_7.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_8.n_364.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_8.n_364.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_9.n_233.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR737LTZ.bestfold.profile.pattern_9.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_0.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_10.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_11.n_27.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_11.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_13.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_1.n_122.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_1.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_2.n_121.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_2.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_3.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_4.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_5.n_68.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_5.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_6.n_67.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_6.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_7.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_8.n_43.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_8.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_9.n_41.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-MYNN-K562-ENCSR992KLV.bestfold.profile.pattern_9.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_0.n_8797.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_0.n_8797.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_10.n_244.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_10.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_11.n_204.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_11.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_12.n_201.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_12.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_13.n_162.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_13.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_14.n_126.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_14.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_15.n_80.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_15.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_16.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_16.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_17.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_18.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_18.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_19.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_1.n_4550.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_1.n_4550.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_2.n_504.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_2.n_504.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_3.n_417.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_3.n_417.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_4.n_377.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_4.n_377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_5.n_367.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_5.n_367.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_6.n_299.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_6.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_7.n_292.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_7.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_8.n_283.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_8.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_9.n_254.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-GM12878-ENCSR189YYK.bestfold.profile.pattern_9.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_0.n_1457.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_0.n_1457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_10.n_429.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_10.n_429.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_11.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_11.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_12.n_325.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_12.n_325.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_13.n_292.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_13.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_14.n_282.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_14.n_282.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_15.n_224.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_15.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_16.n_221.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_16.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_17.n_216.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_17.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_18.n_206.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_18.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_19.n_201.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_19.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_1.n_1417.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_1.n_1417.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_20.n_176.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_20.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_21.n_168.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_21.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_22.n_144.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_22.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_23.n_134.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_23.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_24.n_123.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_24.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_25.n_111.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_25.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_26.n_104.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_26.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_27.n_75.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_27.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_28.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_28.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_29.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_2.n_1390.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_2.n_1390.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_30.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_30.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_3.n_1084.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_3.n_1084.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_4.n_674.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_4.n_674.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_5.n_664.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_5.n_664.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_6.n_649.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_6.n_649.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_7.n_594.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_7.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_8.n_579.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_8.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_9.n_466.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR200AWS.bestfold.profile.pattern_9.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_0.n_2902.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_0.n_2902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_10.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_1.n_1520.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_1.n_1520.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_2.n_1160.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_2.n_1160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_3.n_647.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_3.n_647.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_4.n_449.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_4.n_449.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_5.n_171.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_5.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_6.n_113.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_6.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_7.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_7.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_8.n_53.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_8.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-HepG2-ENCSR525YFS.bestfold.profile.pattern_9.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_0.n_4497.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_0.n_4497.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_10.n_531.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_10.n_531.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_11.n_470.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_11.n_470.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_12.n_230.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_12.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_13.n_142.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_13.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_14.n_114.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_14.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_15.n_89.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_15.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_16.n_84.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_16.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_17.n_83.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_17.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_18.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_18.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_19.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_19.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_1.n_3820.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_1.n_3820.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_20.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_20.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_21.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_21.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_22.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_22.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_23.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_24.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_24.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_2.n_1368.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_2.n_1368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_3.n_1254.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_3.n_1254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_4.n_1093.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_4.n_1093.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_5.n_874.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_5.n_874.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_6.n_860.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_6.n_860.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_7.n_814.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_7.n_814.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_8.n_680.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_8.n_680.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_9.n_671.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR158RYZ.bestfold.profile.pattern_9.n_671.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_0.n_9955.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_0.n_9955.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_10.n_118.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_10.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_11.n_99.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_11.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_12.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_12.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_13.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_13.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_14.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_15.n_62.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_15.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_16.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_16.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_17.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_18.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_18.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_19.n_44.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_19.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_1.n_7014.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_1.n_7014.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_20.n_44.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_20.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_21.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_21.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_22.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_2.n_1067.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_2.n_1067.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_3.n_554.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_3.n_554.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_4.n_439.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_4.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_5.n_398.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_5.n_398.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_6.n_366.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_6.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_7.n_360.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_7.n_360.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_8.n_144.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_8.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_9.n_121.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR237VLT.bestfold.profile.pattern_9.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_0.n_2595.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_0.n_2595.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_10.n_108.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_10.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_11.n_99.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_11.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_12.n_98.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_12.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_13.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_14.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_14.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_15.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_15.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_16.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_1.n_980.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_1.n_980.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_2.n_484.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_2.n_484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_3.n_482.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_3.n_482.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_4.n_264.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_4.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_5.n_226.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_5.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_6.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_7.n_138.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_7.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_8.n_117.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_8.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_9.n_111.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-K562-ENCSR579YNY.bestfold.profile.pattern_9.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_0.n_6485.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_0.n_6485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_10.n_232.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_10.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_11.n_163.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_11.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_12.n_115.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_12.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_13.n_43.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_13.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_14.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_1.n_6131.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_1.n_6131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_2.n_844.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_2.n_844.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_3.n_842.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_3.n_842.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_4.n_604.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_4.n_604.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_5.n_415.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_5.n_415.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_6.n_325.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_6.n_325.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_7.n_298.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_7.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_8.n_269.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_8.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_9.n_235.PWM.meme motif-alignments-all-vs-all/ZBTB40/ZBTB40-201-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_9.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_0.n_927.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_0.n_927.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_10.n_215.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_10.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_11.n_213.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_11.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_12.n_203.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_12.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_13.n_201.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_13.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_14.n_130.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_14.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_15.n_101.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_15.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_16.n_71.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_16.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_17.n_63.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_17.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_18.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_18.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_19.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_19.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_1.n_306.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_1.n_306.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_20.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_20.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_21.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_22.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_22.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_23.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_23.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_2.n_294.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_2.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_3.n_291.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_3.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_4.n_287.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_4.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_5.n_284.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_5.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_6.n_266.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_6.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_7.n_254.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_7.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_8.n_247.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_8.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_9.n_232.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-ZBTB42-HepG2-ENCSR232AAR.bestfold.profile.pattern_9.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_0.n_2595.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_0.n_2595.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_10.n_336.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_10.n_336.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_11.n_323.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_11.n_323.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_12.n_315.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_12.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_13.n_191.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_13.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_14.n_181.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_14.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_15.n_158.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_15.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_16.n_133.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_16.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_17.n_90.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_17.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_18.n_76.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_18.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_19.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_1.n_1900.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_1.n_1900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_20.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_20.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_21.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_2.n_1673.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_2.n_1673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_3.n_1124.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_3.n_1124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_4.n_890.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_4.n_890.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_5.n_677.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_5.n_677.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_6.n_649.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_6.n_649.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_7.n_588.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_7.n_588.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_8.n_451.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_8.n_451.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_9.n_337.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-HepG2-ENCSR173USN.bestfold.profile.pattern_9.n_337.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_0.n_946.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_0.n_946.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_10.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_1.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_1.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_2.n_208.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_2.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_3.n_94.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_3.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_4.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_5.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_6.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_7.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_8.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_9.n_44.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-K562-ENCSR800KMQ.bestfold.profile.pattern_9.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_0.n_906.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_0.n_906.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_10.n_226.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_10.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_11.n_224.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_11.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_12.n_210.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_12.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_13.n_190.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_13.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_14.n_108.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_14.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_15.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_1.n_893.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_1.n_893.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_2.n_579.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_2.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_3.n_476.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_3.n_476.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_4.n_413.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_4.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_5.n_347.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_5.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_6.n_255.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_6.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_7.n_245.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_7.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_8.n_236.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_8.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_9.n_228.PWM.meme motif-alignments-all-vs-all/ZBTB43/ZBTB43-201-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_9.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-201-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-203-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_10.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_11.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_12.n_295.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_13.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_14.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_16.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_17.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_18.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_1.n_2099.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_2.n_1201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_3.n_1187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_4.n_1072.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_5.n_981.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_6.n_666.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_7.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_8.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_9.n_409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_0.n_497.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_10.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_11.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_12.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_14.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_1.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_2.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_3.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_4.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_5.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_6.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_7.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_8.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.PWM.meme motif-alignments-all-vs-all/ZBTB44/ZBTB44-204-vs-ZBTB44-HepG2-ENCSR269MEF.bestfold.profile.pattern_9.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_6.n_253.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_6.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ZFP57-HEK335-ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_0.n_817.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_0.n_817.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_10.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_11.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_11.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_12.n_45.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_12.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_13.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_13.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_1.n_706.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_1.n_706.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_2.n_504.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_2.n_504.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_3.n_321.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_3.n_321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_4.n_221.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_4.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_5.n_115.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_5.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_6.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_7.n_86.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_7.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_8.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_9.n_69.PWM.meme motif-alignments-all-vs-all/ZBTB46/ZBTB46-201-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_9.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_2.n_347.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_2.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_2.n_347.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_2.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_1.n_375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_2.n_347.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_2.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_3.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_4.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_5.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_6.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_7.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_8.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-ZBTB48-HEK329-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_0.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_0.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_10.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_1.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_2.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_3.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_4.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_5.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_6.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_9.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_1.n_269.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_1.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_2.n_217.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_2.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_3.n_146.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_3.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_4.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_5.n_112.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_5.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_6.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_7.n_73.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_7.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_8.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_9.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_9.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_0.n_269.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_0.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_10.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_10.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_11.n_71.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_11.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_12.n_67.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_12.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_13.n_64.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_13.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_14.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_14.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_15.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_15.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_16.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_16.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_17.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_18.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_18.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_19.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_19.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_1.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_20.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_20.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_22.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_23.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_24.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_2.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_2.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_3.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_3.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_4.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_5.n_95.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_5.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_6.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_7.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_7.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_8.n_86.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_8.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_9.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-201-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_9.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_0.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_0.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_10.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_1.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_2.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_3.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_4.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_5.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_6.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HEK293-ENCSR924GRG.bestfold.profile.pattern_9.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_1.n_269.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_1.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_2.n_217.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_2.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_3.n_146.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_3.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_4.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_5.n_112.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_5.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_6.n_77.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_6.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_7.n_73.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_7.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_8.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_9.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_9.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_0.n_269.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_0.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_10.n_78.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_10.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_11.n_71.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_11.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_12.n_67.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_12.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_13.n_64.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_13.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_14.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_14.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_15.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_15.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_16.n_57.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_16.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_17.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_18.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_18.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_19.n_46.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_19.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_1.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_20.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_20.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_22.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_23.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_24.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_2.n_140.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_2.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_3.n_128.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_3.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_4.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_5.n_95.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_5.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_6.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_7.n_87.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_7.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_8.n_86.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_8.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_9.n_81.PWM.meme motif-alignments-all-vs-all/ZBTB49/ZBTB49-206-vs-ZBTB49-K562-ENCSR249VFB.bestfold.profile.pattern_9.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_0.n_4956.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_0.n_4956.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_10.n_241.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_10.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_11.n_222.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_11.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_12.n_171.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_12.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_13.n_154.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_13.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_1.n_3078.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_1.n_3078.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_2.n_989.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_2.n_989.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_3.n_892.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_3.n_892.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_4.n_755.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_4.n_755.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_5.n_688.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_5.n_688.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_6.n_645.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_6.n_645.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_7.n_451.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_7.n_451.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_8.n_427.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_8.n_427.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_9.n_347.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_9.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_0.n_525.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_0.n_525.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_10.n_142.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_10.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_11.n_141.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_11.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_12.n_141.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_12.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_13.n_126.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_13.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_14.n_121.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_14.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_15.n_113.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_15.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_16.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_17.n_62.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_17.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_18.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_19.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_1.n_319.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_1.n_319.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_2.n_318.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_2.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_3.n_222.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_3.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_4.n_211.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_4.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_5.n_202.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_5.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_6.n_194.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_6.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_7.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_8.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_9.n_148.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_9.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_0.n_4956.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_0.n_4956.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_10.n_241.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_10.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_11.n_222.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_11.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_12.n_171.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_12.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_13.n_154.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_13.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_1.n_3078.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_1.n_3078.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_2.n_989.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_2.n_989.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_3.n_892.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_3.n_892.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_4.n_755.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_4.n_755.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_5.n_688.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_5.n_688.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_6.n_645.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_6.n_645.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_7.n_451.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_7.n_451.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_8.n_427.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_8.n_427.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_9.n_347.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HEK293-ENCSR768VNZ.bestfold.profile.pattern_9.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_0.n_525.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_0.n_525.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_10.n_142.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_10.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_11.n_141.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_11.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_12.n_141.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_12.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_13.n_126.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_13.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_14.n_121.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_14.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_15.n_113.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_15.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_16.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_17.n_62.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_17.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_18.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_19.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_1.n_319.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_1.n_319.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_2.n_318.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_2.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_3.n_222.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_3.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_4.n_211.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_4.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_5.n_202.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_5.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_6.n_194.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_6.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_7.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_8.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-2/ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_9.n_148.PWM.meme motif-alignments-all-vs-all/ZSCAN30/ZSCAN30-201-vs-ZSCAN30-HepG2-ENCSR795CKZ.bestfold.profile.pattern_9.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &